Wall clock time and date at job start Tue Mar 31 2020 12:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36072 * 127.09862 * 2 1 4 4 N 1.30615 * 107.44072 * 180.26030 * 3 2 1 5 5 N 1.28541 * 110.05989 * 359.73610 * 4 3 2 6 6 C 1.31445 * 109.71662 * 359.97438 * 5 4 3 7 7 C 1.47945 * 126.51018 * 180.02562 * 6 5 4 8 8 C 1.39571 * 120.10764 * 162.02813 * 7 6 5 9 9 C 1.37993 * 120.00470 * 179.97438 * 8 7 6 10 10 C 1.38245 * 120.20990 * 0.02872 * 9 8 7 11 11 C 1.38938 * 120.21387 * 359.96970 * 10 9 8 12 12 N 1.39950 * 119.99897 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99724 * 153.33099 * 12 11 10 14 14 O 1.21293 * 120.00137 * 354.79431 * 13 12 11 15 15 C 1.50705 * 120.00060 * 174.79114 * 13 12 11 16 16 S 1.81004 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99491 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99792 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99926 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47272 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47409 * 119.99570 * 21 19 17 24 24 H 1.48502 * 109.47033 * 239.99734 * 21 19 17 25 25 C 1.38647 * 119.99766 * 0.28103 * 11 10 9 26 26 H 1.09000 * 109.47095 * 263.92001 * 1 2 3 27 27 H 1.08994 * 109.47123 * 23.92371 * 1 2 3 28 28 H 1.09003 * 109.46659 * 143.92060 * 1 2 3 29 29 H 1.08008 * 126.28167 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.99862 * 359.97438 * 8 7 6 31 31 H 1.08000 * 119.89512 * 179.97438 * 9 8 7 32 32 H 1.08010 * 119.88982 * 179.97438 * 10 9 8 33 33 H 0.96992 * 120.00541 * 333.32855 * 12 11 10 34 34 H 1.09000 * 109.46753 * 60.00202 * 15 13 12 35 35 H 1.08994 * 109.46810 * 300.00288 * 15 13 12 36 36 H 0.97001 * 120.00192 * 180.02562 * 20 19 17 37 37 H 1.07997 * 120.10616 * 179.71950 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2858 1.0853 0.0000 4 7 3.5159 0.6459 -0.0057 5 7 3.5249 -0.6394 -0.0037 6 6 2.2907 -1.0916 0.0040 7 6 1.8732 -2.5109 0.0092 8 6 0.5759 -2.8577 0.3895 9 6 0.1886 -4.1822 0.3930 10 6 1.0823 -5.1692 0.0212 11 6 2.3759 -4.8340 -0.3591 12 7 3.2767 -5.8368 -0.7352 13 6 4.2864 -5.5528 -1.5816 14 8 4.3599 -4.4545 -2.0911 15 6 5.3241 -6.5997 -1.8949 16 16 6.5368 -5.9193 -3.0536 17 6 7.5977 -7.3138 -3.2400 18 1 7.3860 -8.2285 -2.7063 19 6 8.7060 -7.2363 -4.0719 20 7 8.9643 -6.1213 -4.7220 21 14 9.8311 -8.7144 -4.2689 22 1 9.3255 -9.8357 -3.4370 23 1 9.8590 -9.1288 -5.6947 24 1 11.2036 -8.3536 -3.8313 25 6 2.7759 -3.5065 -0.3608 26 1 -0.3633 -0.1088 1.0219 27 1 -0.3633 0.9393 -0.4167 28 1 -0.3633 -0.8306 -0.6052 29 1 1.9769 2.1203 0.0004 30 1 -0.1250 -2.0894 0.6811 31 1 -0.8156 -4.4486 0.6880 32 1 0.7737 -6.2043 0.0262 33 1 3.1745 -6.7362 -0.3867 34 1 4.8407 -7.4676 -2.3435 35 1 5.8274 -6.8989 -0.9756 36 1 9.7387 -6.0672 -5.3037 37 1 3.7823 -3.2444 -0.6517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025264038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:01 Heat of formation + Delta-G solvation = 82.778277 kcal Electronic energy + Delta-G solvation = -22679.490768 eV Core-core repulsion = 19164.114106 eV Total energy + Delta-G solvation = -3515.376663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.05916 -40.40450 -38.39929 -35.43922 -34.63111 -32.44125 -32.40583 -30.73492 -29.37559 -28.43270 -27.96094 -25.49771 -23.97129 -23.16323 -22.08825 -21.06195 -20.30179 -18.24331 -17.73200 -16.86923 -16.67806 -16.48057 -16.35613 -15.46385 -15.22092 -14.84619 -14.79917 -14.35242 -14.02380 -13.82901 -13.70961 -13.42244 -13.35049 -13.10383 -12.60875 -12.15014 -11.80563 -11.74399 -11.58066 -11.07002 -11.02625 -10.78485 -10.69704 -10.41803 -10.40535 -9.92717 -9.82735 -9.47125 -9.07762 -8.57535 -8.25892 -8.15521 -6.51773 -6.21977 -3.93358 0.62987 1.20025 1.87349 2.17219 2.75154 2.86816 2.96540 3.22180 3.26779 3.31736 3.57665 3.71685 3.97304 4.17304 4.18996 4.37015 4.57996 4.60604 4.76898 4.92939 4.94638 4.96602 5.05558 5.13358 5.31061 5.42827 5.50447 5.55679 5.78292 5.80459 5.93818 6.05675 6.08833 6.20524 6.27082 6.41866 6.62478 6.90118 7.43813 7.59554 8.34374 8.35627 8.61657 9.23281 10.85436 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.002788 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.701211 B =10042.149592 C =11279.118775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.481 5.481 3 C 0.150 3.850 4 N -0.291 5.291 5 N -0.268 5.268 6 C 0.222 3.778 7 C 0.001 3.999 8 C -0.143 4.143 9 C -0.095 4.095 10 C -0.143 4.143 11 C 0.166 3.834 12 N -0.678 5.678 13 C 0.529 3.471 14 O -0.487 6.487 15 C -0.154 4.154 16 S -0.055 6.055 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.866 5.866 21 Si 0.920 3.080 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.087 4.087 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.221 0.779 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.412 0.588 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.030 6.766 12.854 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.173 5.173 3 C -0.136 4.136 4 N -0.131 5.131 5 N -0.108 5.108 6 C -0.042 4.042 7 C -0.003 4.003 8 C -0.163 4.163 9 C -0.114 4.114 10 C -0.164 4.164 11 C 0.070 3.930 12 N -0.324 5.324 13 C 0.317 3.683 14 O -0.358 6.358 15 C -0.304 4.304 16 S 0.172 5.828 17 C -0.685 4.685 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.501 5.501 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.109 4.109 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.237 0.763 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.248 0.752 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -22.178 8.728 11.826 26.606 hybrid contribution -0.953 -2.504 0.594 2.744 sum -23.131 6.224 12.420 26.982 Atomic orbital electron populations 1.22321 0.75563 1.05548 1.04086 1.46524 1.08925 1.06541 1.55260 1.26614 0.87132 0.94623 1.05259 1.74270 1.17926 1.03410 1.17482 1.74692 1.16175 1.02676 1.17298 1.22960 0.86934 0.89367 1.04901 1.17258 0.94204 0.86499 1.02299 1.21237 0.94997 0.97120 1.02991 1.20723 0.99322 0.91800 0.99543 1.20992 0.91446 1.00359 1.03614 1.17697 0.89373 0.88790 0.97096 1.43735 1.28657 1.12512 1.47506 1.20621 0.81030 0.89553 0.77135 1.90736 1.73222 1.23361 1.48528 1.23550 1.00070 1.00456 1.06369 1.85511 1.24211 1.19889 1.53207 1.22891 1.13008 0.99700 1.32878 0.90787 1.25001 0.96957 0.96921 0.94724 1.70023 1.27459 1.25499 1.27122 0.86103 0.79913 0.81307 0.78079 1.19617 1.20571 1.20531 1.21489 1.01697 0.90154 0.97570 0.89751 0.88708 0.88577 0.76263 0.85715 0.85152 0.85230 0.75215 0.88804 0.88614 0.92165 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 9.41 59.85 0.56 0.86 16 2 N -0.48 -4.81 3.20 -122.92 -0.39 -5.21 16 3 C 0.15 1.58 12.77 -89.33 -1.14 0.44 16 4 N -0.29 -4.66 12.19 29.82 0.36 -4.30 16 5 N -0.27 -4.81 12.02 32.51 0.39 -4.42 16 6 C 0.22 3.18 7.69 -154.24 -1.19 2.00 16 7 C 0.00 0.01 5.86 -105.00 -0.62 -0.61 16 8 C -0.14 -1.31 8.73 -39.17 -0.34 -1.66 16 9 C -0.10 -0.78 10.02 -39.67 -0.40 -1.17 16 10 C -0.14 -1.37 9.94 -39.32 -0.39 -1.76 16 11 C 0.17 2.21 6.39 -83.74 -0.54 1.67 16 12 N -0.68 -9.06 5.36 -9.89 -0.05 -9.12 16 13 C 0.53 9.70 7.64 -10.98 -0.08 9.62 16 14 O -0.49 -10.94 13.13 5.55 0.07 -10.86 16 15 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 16 S -0.05 -1.48 20.57 -107.50 -2.21 -3.69 16 17 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.09 -1.37 8.35 -39.00 -0.33 -1.69 16 26 H 0.08 0.21 7.74 -51.93 -0.40 -0.19 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.40 6.54 -51.93 -0.34 0.06 16 29 H 0.22 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.13 0.75 4.91 -52.48 -0.26 0.49 16 31 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.41 3.88 8.79 -40.82 -0.36 3.52 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 35 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.16 3.15 5.83 -52.49 -0.31 2.85 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -39.37 337.07 -8.82 -48.20 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.75 Total: 1.40 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -4.03 Total: -7.99 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 1.04 Total: -48.55 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.37 -8.82 -48.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025264038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.974 kcal (2) G-P(sol) polarization free energy of solvation -39.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds