Wall clock time and date at job start Tue Mar 31 2020 12:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36072 * 127.09862 * 2 1 4 4 N 1.30615 * 107.44072 * 180.26030 * 3 2 1 5 5 N 1.28541 * 110.05989 * 359.73610 * 4 3 2 6 6 C 1.31445 * 109.71662 * 359.97438 * 5 4 3 7 7 C 1.47945 * 126.51018 * 180.02562 * 6 5 4 8 8 C 1.39571 * 120.10764 * 162.02813 * 7 6 5 9 9 C 1.37993 * 120.00470 * 179.97438 * 8 7 6 10 10 C 1.38245 * 120.20990 * 0.02872 * 9 8 7 11 11 C 1.38938 * 120.21387 * 359.96970 * 10 9 8 12 12 N 1.39950 * 119.99897 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99724 * 153.33099 * 12 11 10 14 14 O 1.21293 * 120.00137 * 354.79431 * 13 12 11 15 15 C 1.50705 * 120.00060 * 174.79114 * 13 12 11 16 16 S 1.81004 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99491 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99792 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99926 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47272 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47409 * 119.99570 * 21 19 17 24 24 H 1.48502 * 109.47033 * 239.99734 * 21 19 17 25 25 C 1.38647 * 119.99766 * 0.28103 * 11 10 9 26 26 H 1.09000 * 109.47095 * 263.92001 * 1 2 3 27 27 H 1.08994 * 109.47123 * 23.92371 * 1 2 3 28 28 H 1.09003 * 109.46659 * 143.92060 * 1 2 3 29 29 H 1.08008 * 126.28167 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.99862 * 359.97438 * 8 7 6 31 31 H 1.08000 * 119.89512 * 179.97438 * 9 8 7 32 32 H 1.08010 * 119.88982 * 179.97438 * 10 9 8 33 33 H 0.96992 * 120.00541 * 333.32855 * 12 11 10 34 34 H 1.09000 * 109.46753 * 60.00202 * 15 13 12 35 35 H 1.08994 * 109.46810 * 300.00288 * 15 13 12 36 36 H 0.97001 * 120.00192 * 180.02562 * 20 19 17 37 37 H 1.07997 * 120.10616 * 179.71950 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2858 1.0853 0.0000 4 7 3.5159 0.6459 -0.0057 5 7 3.5249 -0.6394 -0.0037 6 6 2.2907 -1.0916 0.0040 7 6 1.8732 -2.5109 0.0092 8 6 0.5759 -2.8577 0.3895 9 6 0.1886 -4.1822 0.3930 10 6 1.0823 -5.1692 0.0212 11 6 2.3759 -4.8340 -0.3591 12 7 3.2767 -5.8368 -0.7352 13 6 4.2864 -5.5528 -1.5816 14 8 4.3599 -4.4545 -2.0911 15 6 5.3241 -6.5997 -1.8949 16 16 6.5368 -5.9193 -3.0536 17 6 7.5977 -7.3138 -3.2400 18 1 7.3860 -8.2285 -2.7063 19 6 8.7060 -7.2363 -4.0719 20 7 8.9643 -6.1213 -4.7220 21 14 9.8311 -8.7144 -4.2689 22 1 9.3255 -9.8357 -3.4370 23 1 9.8590 -9.1288 -5.6947 24 1 11.2036 -8.3536 -3.8313 25 6 2.7759 -3.5065 -0.3608 26 1 -0.3633 -0.1088 1.0219 27 1 -0.3633 0.9393 -0.4167 28 1 -0.3633 -0.8306 -0.6052 29 1 1.9769 2.1203 0.0004 30 1 -0.1250 -2.0894 0.6811 31 1 -0.8156 -4.4486 0.6880 32 1 0.7737 -6.2043 0.0262 33 1 3.1745 -6.7362 -0.3867 34 1 4.8407 -7.4676 -2.3435 35 1 5.8274 -6.8989 -0.9756 36 1 9.7387 -6.0672 -5.3037 37 1 3.7823 -3.2444 -0.6517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025264038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:00 Heat of formation + Delta-G solvation = 54.919366 kcal Electronic energy + Delta-G solvation = -22680.698821 eV Core-core repulsion = 19164.114106 eV Total energy + Delta-G solvation = -3516.584716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.97686 -41.58239 -39.50159 -36.36102 -35.69702 -34.60083 -33.30339 -31.98767 -30.37559 -29.60286 -28.55428 -27.67739 -24.91937 -24.05806 -23.05895 -21.97429 -21.53927 -19.90410 -18.97894 -18.02573 -17.65452 -17.37953 -17.26160 -16.89660 -16.67335 -16.26710 -16.13955 -15.54645 -15.29047 -14.83987 -14.63942 -14.48183 -14.33409 -14.12849 -13.81050 -13.55298 -13.18270 -12.92652 -12.75478 -12.63732 -12.58753 -12.38654 -11.81718 -11.72688 -11.38932 -11.17288 -11.15602 -10.89138 -10.83610 -10.29349 -9.55222 -9.13075 -8.69542 -8.35935 -6.14991 -0.23353 0.27786 1.03704 1.21851 1.41160 1.42818 1.46325 1.53326 1.56741 1.87620 2.11129 2.25330 2.82333 2.98546 3.12493 3.27221 3.60102 3.81566 3.82747 3.97839 4.10300 4.17801 4.23479 4.24861 4.36407 4.43995 4.45733 4.61875 4.65969 4.76282 4.91109 5.04246 5.27448 5.30123 5.40925 5.42581 5.47043 5.89782 5.96952 6.18786 6.34919 7.05074 7.07036 7.65661 8.73667 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.002788 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.701211 B =10042.149592 C =11279.118775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.472 5.472 3 C 0.172 3.828 4 N -0.355 5.355 5 N -0.340 5.340 6 C 0.210 3.790 7 C -0.020 4.020 8 C -0.123 4.123 9 C -0.082 4.082 10 C -0.124 4.124 11 C 0.139 3.861 12 N -0.654 5.654 13 C 0.529 3.471 14 O -0.539 6.539 15 C -0.127 4.127 16 S -0.156 6.156 17 C -0.543 4.543 18 H 0.087 0.913 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 1.002 2.998 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.124 4.124 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.274 0.726 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.168 0.832 33 H 0.432 0.568 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.271 0.729 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.548 5.036 14.751 32.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.163 5.163 3 C -0.115 4.115 4 N -0.194 5.194 5 N -0.180 5.180 6 C -0.056 4.056 7 C -0.024 4.024 8 C -0.143 4.143 9 C -0.100 4.100 10 C -0.145 4.145 11 C 0.044 3.956 12 N -0.301 5.301 13 C 0.317 3.683 14 O -0.415 6.415 15 C -0.278 4.278 16 S 0.071 5.929 17 C -0.691 4.691 18 H 0.105 0.895 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.824 3.176 22 H -0.177 1.177 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.147 4.147 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.119 0.881 29 H 0.289 0.711 30 H 0.181 0.819 31 H 0.199 0.801 32 H 0.185 0.815 33 H 0.272 0.728 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -26.765 6.972 13.771 30.897 hybrid contribution 0.182 -1.858 0.119 1.871 sum -26.583 5.113 13.890 30.426 Atomic orbital electron populations 1.22846 0.71859 1.07733 1.06246 1.46807 1.10856 1.04826 1.53787 1.27558 0.85848 0.96528 1.01610 1.74103 1.21447 1.03132 1.20719 1.74546 1.19322 1.04014 1.20147 1.23184 0.86934 0.90889 1.04578 1.17455 0.95742 0.85485 1.03689 1.21706 0.93264 0.99039 1.00273 1.21357 1.00975 0.90570 0.97055 1.21442 0.89308 1.02821 1.00886 1.17894 0.90976 0.87531 0.99231 1.43292 1.27247 1.13714 1.45872 1.20387 0.81859 0.88326 0.77744 1.90747 1.74635 1.25147 1.50942 1.23353 0.98520 1.00972 1.04916 1.85763 1.27746 1.22702 1.56648 1.23232 1.13184 0.99719 1.32962 0.89531 1.26188 0.98776 1.00328 0.94132 1.70204 1.28330 1.28246 1.28176 0.84859 0.77158 0.77209 0.78415 1.17727 1.19876 1.20127 1.21210 1.00320 0.92541 1.00630 0.87032 0.85408 0.88088 0.71105 0.81877 0.80050 0.81477 0.72760 0.86112 0.86659 0.92024 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.24 9.41 127.77 1.20 1.44 16 2 N -0.47 -8.82 3.20 -542.79 -1.74 -10.56 16 3 C 0.17 3.53 12.77 179.90 2.30 5.82 16 4 N -0.36 -12.22 12.19 -59.57 -0.73 -12.95 16 5 N -0.34 -13.49 12.02 -51.05 -0.61 -14.11 16 6 C 0.21 6.30 7.69 136.42 1.05 7.35 16 7 C -0.02 -0.55 5.86 -20.11 -0.12 -0.67 16 8 C -0.12 -1.82 8.73 22.53 0.20 -1.62 16 9 C -0.08 -0.88 10.02 22.21 0.22 -0.66 16 10 C -0.12 -1.88 9.94 22.44 0.22 -1.65 16 11 C 0.14 3.61 6.39 38.11 0.24 3.86 16 12 N -0.65 -17.29 5.36 -303.59 -1.63 -18.92 16 13 C 0.53 20.35 7.64 87.66 0.67 21.02 16 14 O -0.54 -26.53 13.13 -3.07 -0.04 -26.57 16 15 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 16 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 17 C -0.54 -31.42 9.50 67.96 0.65 -30.77 16 18 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16 19 C 0.01 0.59 5.49 84.86 0.47 1.06 16 20 N -0.91 -57.57 13.22 21.65 0.29 -57.28 16 21 Si 1.00 44.35 29.55 68.60 2.03 46.37 16 22 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 C -0.12 -4.20 8.35 22.64 0.19 -4.01 16 26 H 0.11 -0.04 7.74 -2.39 -0.02 -0.05 16 27 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.10 0.41 6.54 -2.39 -0.02 0.39 16 29 H 0.27 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.16 1.08 4.91 -2.91 -0.01 1.07 16 31 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.43 7.26 8.79 -92.71 -0.82 6.45 16 34 H 0.12 4.14 8.14 -2.40 -0.02 4.12 16 35 H 0.12 4.12 8.14 -2.40 -0.02 4.10 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.11 4.78 5.83 -2.91 -0.02 4.77 16 Total: -1.00 -100.11 337.07 4.45 -95.66 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.32 Total: 11.84 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 7.73 Total: -3.44 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.42 Total: -113.81 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -100.11 4.45 -95.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025264038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.578 kcal (2) G-P(sol) polarization free energy of solvation -100.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds