Wall clock time and date at job start Tue Mar 31 2020 12:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00271 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00352 * 3 2 1 5 5 H 1.08004 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99935 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46968 * 90.00141 * 8 6 4 10 10 H 1.48489 * 109.47406 * 209.99951 * 8 6 4 11 11 H 1.48499 * 109.47380 * 330.00474 * 8 6 4 12 12 C 1.34777 * 119.99875 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99947 * 179.97438 * 12 2 1 14 14 N 1.34773 * 120.00097 * 0.26801 * 12 2 1 15 15 C 1.38752 * 120.00209 * 179.72746 * 14 12 2 16 16 N 1.31350 * 127.38643 * 179.71338 * 15 14 12 17 17 C 1.32003 * 116.80934 * 179.78391 * 16 15 14 18 18 C 1.48370 * 121.24904 * 180.22893 * 17 16 15 19 19 C 1.39359 * 120.12152 * 0.02562 * 18 17 16 20 20 C 1.38008 * 119.87446 * 179.72197 * 19 18 17 21 21 C 1.38334 * 120.12107 * 0.57720 * 20 19 18 22 22 C 1.38321 * 120.24613 * 359.69797 * 21 20 19 23 23 C 1.38015 * 120.12449 * 359.97438 * 22 21 20 24 24 N 1.30921 * 117.49742 * 0.53365 * 17 16 15 25 25 S 1.69925 * 105.75801 * 359.72182 * 24 17 16 26 26 H 1.09001 * 109.47017 * 269.99772 * 1 2 3 27 27 H 1.08997 * 109.47346 * 29.99460 * 1 2 3 28 28 H 1.09001 * 109.47115 * 149.99565 * 1 2 3 29 29 H 1.08994 * 109.46719 * 30.00276 * 3 2 1 30 30 H 1.08996 * 109.47068 * 150.00171 * 3 2 1 31 31 H 0.97002 * 119.99217 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00112 * 359.73180 * 14 12 2 33 33 H 1.08001 * 120.05648 * 0.02744 * 19 18 17 34 34 H 1.08002 * 119.94294 * 180.31898 * 20 19 18 35 35 H 1.07993 * 119.87472 * 179.71957 * 21 20 19 36 36 H 1.08000 * 119.93777 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.06600 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8781 -1.6727 7 7 3.3448 3.2580 -2.9126 8 14 3.7318 3.9299 -0.2529 9 1 5.1052 3.5091 0.1241 10 1 3.7468 5.3564 -0.6648 11 1 2.8252 3.7602 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3546 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0065 15 6 2.1587 -3.5360 -0.0128 16 7 1.6536 -4.7485 -0.0138 17 6 2.5122 -5.7511 -0.0247 18 6 2.0493 -7.1607 -0.0319 19 6 0.6859 -7.4492 -0.0277 20 6 0.2610 -8.7622 -0.0403 21 6 1.1857 -9.7910 -0.0449 22 6 2.5402 -9.5105 -0.0433 23 6 2.9764 -8.2011 -0.0376 24 7 3.7874 -5.4549 -0.0227 25 16 3.8669 -3.7575 -0.0134 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5138 31 1 3.8210 4.0843 -3.0898 32 1 0.4950 -2.3344 -0.0065 33 1 -0.0367 -6.6466 -0.0197 34 1 -0.7953 -8.9869 -0.0423 35 1 0.8488 -10.8171 -0.0502 36 1 3.2578 -10.3176 -0.0473 37 1 4.0342 -7.9832 -0.0367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:48 Heat of formation + Delta-G solvation = 73.547093 kcal Electronic energy + Delta-G solvation = -22758.777416 eV Core-core repulsion = 19243.000459 eV Total energy + Delta-G solvation = -3515.776957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68116 -40.05737 -38.66816 -35.69731 -35.08413 -32.71846 -31.96067 -31.25305 -30.59803 -28.67534 -26.55060 -25.45315 -23.45029 -22.63606 -22.10959 -20.97268 -19.98845 -18.30419 -17.63086 -17.29289 -17.15425 -16.94201 -15.92329 -15.57002 -15.16790 -14.90802 -14.72525 -14.20277 -13.99335 -13.65959 -13.57424 -13.22300 -12.82961 -12.56451 -12.39830 -12.02539 -11.74482 -11.61305 -11.54851 -11.44399 -11.19139 -11.07575 -10.65626 -10.31348 -10.05973 -9.76012 -9.65885 -9.57032 -9.27119 -9.12872 -8.70363 -8.38661 -7.99287 -6.19837 -4.20935 0.38235 1.05193 1.08968 1.23002 1.86012 2.30332 2.65929 3.21594 3.26932 3.30034 3.31716 3.75358 3.79443 4.13276 4.29048 4.72662 4.77334 4.90094 5.11794 5.13213 5.20596 5.27878 5.38265 5.53932 5.58022 5.72752 5.83032 5.88043 6.05361 6.12695 6.28267 6.29195 6.36343 6.61345 6.74108 6.83332 6.99204 7.43358 7.58852 7.93109 8.29484 8.54213 8.82270 9.38119 10.93156 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.002688 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.071940 B =10415.719865 C =10873.156742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.590 5.590 3 C 0.229 3.771 4 C -0.538 4.538 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.696 3.304 13 O -0.545 6.545 14 N -0.624 5.624 15 C 0.312 3.688 16 N -0.560 5.560 17 C 0.325 3.675 18 C -0.019 4.019 19 C -0.074 4.074 20 C -0.129 4.129 21 C -0.107 4.107 22 C -0.128 4.128 23 C -0.078 4.078 24 N -0.522 5.522 25 S 0.347 5.653 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.267 0.733 32 H 0.419 0.581 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -20.116 7.999 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.324 5.324 3 C 0.109 3.891 4 C -0.576 4.576 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.703 3.297 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.396 3.604 13 O -0.418 6.418 14 N -0.278 5.278 15 C -0.065 4.065 16 N -0.293 5.293 17 C 0.038 3.962 18 C -0.024 4.024 19 C -0.095 4.095 20 C -0.147 4.147 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.098 4.098 24 N -0.357 5.357 25 S 0.485 5.515 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.260 0.740 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.566 -19.743 7.894 21.980 hybrid contribution -1.336 0.588 0.439 1.524 sum -6.902 -19.155 8.333 22.000 Atomic orbital electron populations 1.21785 0.80219 1.03560 1.01233 1.47140 1.06410 1.05011 1.73845 1.19792 0.92427 0.78001 0.98903 1.21272 1.37820 1.07518 0.90989 0.90620 1.24839 0.95041 0.97263 0.95664 1.69889 1.40912 1.23497 1.18701 0.86858 0.80257 0.79907 0.82700 1.19705 1.20935 1.19015 1.15814 0.85536 0.79789 0.79286 1.90918 1.10793 1.83989 1.56081 1.42113 1.10908 1.00959 1.73864 1.24611 0.98120 0.88409 0.95387 1.67270 1.37389 0.96076 1.28516 1.21076 0.84408 0.93722 0.96997 1.17786 0.93627 0.86909 1.04062 1.21313 0.94640 0.97094 0.96408 1.21114 0.99864 0.92349 1.01390 1.21298 0.93304 0.99314 0.98650 1.21085 0.95945 0.96200 1.01382 1.21277 1.00065 0.91682 0.96793 1.77391 1.19601 1.09047 1.29694 1.86057 1.02444 0.98169 1.64835 0.92689 0.89217 0.92469 0.94303 0.93929 0.92348 0.74039 0.84638 0.85571 0.85890 0.85559 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.21 59.84 0.61 1.59 16 2 N -0.59 -10.91 2.86 -188.75 -0.54 -11.45 16 3 C 0.23 5.11 4.23 -5.19 -0.02 5.08 16 4 C -0.54 -14.51 9.94 -34.44 -0.34 -14.86 16 5 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 8 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 12 C 0.70 13.15 8.24 -86.92 -0.72 12.43 16 13 O -0.54 -12.14 13.66 5.29 0.07 -12.07 16 14 N -0.62 -9.49 5.26 -16.87 -0.09 -9.58 16 15 C 0.31 5.08 8.49 -86.17 -0.73 4.35 16 16 N -0.56 -8.67 9.86 -14.43 -0.14 -8.81 16 17 C 0.33 5.02 7.44 -158.86 -1.18 3.83 16 18 C -0.02 -0.25 5.88 -104.90 -0.62 -0.86 16 19 C -0.07 -0.81 9.60 -39.25 -0.38 -1.19 16 20 C -0.13 -1.12 10.03 -39.63 -0.40 -1.52 16 21 C -0.11 -0.86 10.04 -39.52 -0.40 -1.25 16 22 C -0.13 -1.13 10.03 -39.63 -0.40 -1.53 16 23 C -0.08 -0.88 9.60 -39.25 -0.38 -1.25 16 24 N -0.52 -8.51 11.42 29.63 0.34 -8.17 16 25 S 0.35 5.92 21.14 -107.50 -2.27 3.65 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.06 0.59 6.35 -51.93 -0.33 0.26 16 29 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.42 4.96 6.55 -40.82 -0.27 4.69 16 33 H 0.14 1.45 7.62 -52.49 -0.40 1.05 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.51 7.62 -52.49 -0.40 1.11 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -32.69 334.44 -10.35 -43.05 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.82 Total: 1.53 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -5.04 Total: 6.82 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.34 Total: -63.76 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -2.27 Total: 3.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.69 -10.35 -43.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.592 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds