Wall clock time and date at job start Tue Mar 31 2020 12:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00271 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00352 * 3 2 1 5 5 H 1.08004 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99935 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46968 * 90.00141 * 8 6 4 10 10 H 1.48489 * 109.47406 * 209.99951 * 8 6 4 11 11 H 1.48499 * 109.47380 * 330.00474 * 8 6 4 12 12 C 1.34777 * 119.99875 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99947 * 179.97438 * 12 2 1 14 14 N 1.34773 * 120.00097 * 0.26801 * 12 2 1 15 15 C 1.38752 * 120.00209 * 179.72746 * 14 12 2 16 16 N 1.31350 * 127.38643 * 179.71338 * 15 14 12 17 17 C 1.32003 * 116.80934 * 179.78391 * 16 15 14 18 18 C 1.48370 * 121.24904 * 180.22893 * 17 16 15 19 19 C 1.39359 * 120.12152 * 0.02562 * 18 17 16 20 20 C 1.38008 * 119.87446 * 179.72197 * 19 18 17 21 21 C 1.38334 * 120.12107 * 0.57720 * 20 19 18 22 22 C 1.38321 * 120.24613 * 359.69797 * 21 20 19 23 23 C 1.38015 * 120.12449 * 359.97438 * 22 21 20 24 24 N 1.30921 * 117.49742 * 0.53365 * 17 16 15 25 25 S 1.69925 * 105.75801 * 359.72182 * 24 17 16 26 26 H 1.09001 * 109.47017 * 269.99772 * 1 2 3 27 27 H 1.08997 * 109.47346 * 29.99460 * 1 2 3 28 28 H 1.09001 * 109.47115 * 149.99565 * 1 2 3 29 29 H 1.08994 * 109.46719 * 30.00276 * 3 2 1 30 30 H 1.08996 * 109.47068 * 150.00171 * 3 2 1 31 31 H 0.97002 * 119.99217 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00112 * 359.73180 * 14 12 2 33 33 H 1.08001 * 120.05648 * 0.02744 * 19 18 17 34 34 H 1.08002 * 119.94294 * 180.31898 * 20 19 18 35 35 H 1.07993 * 119.87472 * 179.71957 * 21 20 19 36 36 H 1.08000 * 119.93777 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.06600 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8781 -1.6727 7 7 3.3448 3.2580 -2.9126 8 14 3.7318 3.9299 -0.2529 9 1 5.1052 3.5091 0.1241 10 1 3.7468 5.3564 -0.6648 11 1 2.8252 3.7602 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3546 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0065 15 6 2.1587 -3.5360 -0.0128 16 7 1.6536 -4.7485 -0.0138 17 6 2.5122 -5.7511 -0.0247 18 6 2.0493 -7.1607 -0.0319 19 6 0.6859 -7.4492 -0.0277 20 6 0.2610 -8.7622 -0.0403 21 6 1.1857 -9.7910 -0.0449 22 6 2.5402 -9.5105 -0.0433 23 6 2.9764 -8.2011 -0.0376 24 7 3.7874 -5.4549 -0.0227 25 16 3.8669 -3.7575 -0.0134 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5138 31 1 3.8210 4.0843 -3.0898 32 1 0.4950 -2.3344 -0.0065 33 1 -0.0367 -6.6466 -0.0197 34 1 -0.7953 -8.9869 -0.0423 35 1 0.8488 -10.8171 -0.0502 36 1 3.2578 -10.3176 -0.0473 37 1 4.0342 -7.9832 -0.0367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:47 Heat of formation + Delta-G solvation = 53.199626 kcal Electronic energy + Delta-G solvation = -22759.659748 eV Core-core repulsion = 19243.000459 eV Total energy + Delta-G solvation = -3516.659289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01391 -41.30204 -39.54811 -37.17451 -36.52460 -34.69751 -33.14816 -32.05597 -31.53895 -30.43641 -27.79611 -26.70992 -24.90956 -23.64866 -23.20308 -22.33633 -21.16564 -19.63481 -19.17454 -18.97005 -18.55627 -17.84047 -17.33447 -16.83324 -16.36984 -16.31880 -15.89705 -15.52982 -15.23381 -14.82913 -14.49258 -14.30991 -14.29284 -13.78612 -13.73510 -13.38806 -13.20793 -13.01394 -12.83522 -12.67972 -12.43787 -12.24861 -12.04529 -11.96187 -11.75095 -11.53277 -10.97583 -10.88238 -10.81559 -10.41960 -9.87179 -9.66401 -9.31824 -8.32604 -6.38976 -0.80538 -0.23124 0.11795 0.49032 0.57114 0.96710 1.37442 1.41570 1.48733 1.51060 1.91769 2.32903 2.49953 2.93768 2.97366 3.03425 3.91351 4.06938 4.13985 4.17691 4.28261 4.35022 4.53752 4.56678 4.62740 4.68666 4.75804 4.86133 4.89650 4.98385 5.15022 5.27136 5.40902 5.47279 5.53245 5.57375 5.60792 6.02920 6.20556 6.30758 6.57878 6.63369 7.03972 7.26019 8.84128 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.002688 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.071940 B =10415.719865 C =10873.156742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.595 5.595 3 C 0.237 3.763 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.230 1.230 12 C 0.693 3.307 13 O -0.585 6.585 14 N -0.604 5.604 15 C 0.313 3.687 16 N -0.550 5.550 17 C 0.323 3.677 18 C -0.053 4.053 19 C -0.081 4.081 20 C -0.126 4.126 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.090 4.090 24 N -0.530 5.530 25 S 0.301 5.699 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.268 0.732 32 H 0.437 0.563 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 -22.061 9.948 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C 0.115 3.885 4 C -0.578 4.578 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.153 1.153 12 C 0.393 3.607 13 O -0.461 6.461 14 N -0.261 5.261 15 C -0.066 4.066 16 N -0.283 5.283 17 C 0.037 3.963 18 C -0.058 4.058 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.145 4.145 23 C -0.111 4.111 24 N -0.364 5.364 25 S 0.439 5.561 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.281 0.719 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.857 -21.736 9.859 25.127 hybrid contribution -0.757 0.948 -0.249 1.239 sum -8.615 -20.788 9.610 24.468 Atomic orbital electron populations 1.22147 0.76721 1.04644 1.03978 1.47095 1.08536 1.03670 1.73543 1.19500 0.93092 0.80241 0.95676 1.21529 1.37084 1.06804 0.92367 0.95211 1.25837 0.95250 0.98980 0.98554 1.70054 1.42559 1.24433 1.21460 0.85742 0.79773 0.77605 0.79988 1.20246 1.20528 1.15269 1.15915 0.85157 0.80637 0.78981 1.90899 1.12740 1.84813 1.57625 1.41715 1.11481 0.99671 1.73198 1.24684 0.97594 0.88896 0.95389 1.67348 1.36984 0.95660 1.28261 1.21722 0.84140 0.94989 0.95452 1.17965 0.94996 0.85670 1.07184 1.21420 0.93626 0.98449 0.96724 1.21478 1.01646 0.91300 0.99949 1.21760 0.92637 1.00929 0.96035 1.21418 0.97252 0.95600 1.00186 1.21347 0.99487 0.92679 0.97573 1.77470 1.20183 1.07741 1.30976 1.86156 1.04169 0.99592 1.66219 0.88973 0.89750 0.89931 0.91498 0.95129 0.92287 0.71943 0.84831 0.82655 0.82351 0.82978 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.21 127.77 1.30 2.86 16 2 N -0.60 -21.42 2.86 -869.34 -2.48 -23.90 16 3 C 0.24 10.37 4.23 85.63 0.36 10.73 16 4 C -0.54 -29.77 9.94 25.60 0.25 -29.51 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.68 5.47 84.66 0.46 1.15 16 7 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 8 Si 0.95 41.93 27.47 68.60 1.88 43.81 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 12 C 0.69 26.18 8.24 179.06 1.48 27.66 16 13 O -0.58 -26.81 13.66 -3.98 -0.05 -26.86 16 14 N -0.60 -18.02 5.26 -325.55 -1.71 -19.73 16 15 C 0.31 10.26 8.49 178.79 1.52 11.77 16 16 N -0.55 -16.98 9.86 -199.56 -1.97 -18.95 16 17 C 0.32 10.11 7.44 138.23 1.03 11.14 16 18 C -0.05 -1.35 5.88 -20.04 -0.12 -1.47 16 19 C -0.08 -1.66 9.60 22.49 0.22 -1.45 16 20 C -0.13 -1.76 10.03 22.24 0.22 -1.54 16 21 C -0.09 -1.14 10.04 22.31 0.22 -0.92 16 22 C -0.13 -1.90 10.03 22.24 0.22 -1.68 16 23 C -0.09 -1.97 9.60 22.48 0.22 -1.76 16 24 N -0.53 -17.89 11.42 -60.18 -0.69 -18.57 16 25 S 0.30 10.76 21.14 -56.49 -1.19 9.57 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 28 H 0.08 1.48 6.35 -2.39 -0.02 1.47 16 29 H 0.07 2.59 7.13 -2.39 -0.02 2.57 16 30 H 0.03 1.43 6.85 -2.39 -0.02 1.41 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.44 9.52 6.55 -92.71 -0.61 8.91 16 33 H 0.13 2.68 7.62 -2.91 -0.02 2.66 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.12 2.86 7.62 -2.91 -0.02 2.84 16 Total: -1.00 -75.35 334.44 1.94 -73.41 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.46 Total: 12.04 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 7.39 Total: 26.98 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -6.55 Total: -138.96 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Atomic # 16 Polarization: 10.76 SS G_CDS: -1.19 Total: 9.57 kcal Total: -75.35 1.94 -73.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.612 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds