Wall clock time and date at job start Tue Mar 31 2020 12:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99626 * 2 1 4 4 H 1.48502 * 109.47278 * 269.99652 * 3 2 1 5 5 H 1.48503 * 109.47289 * 30.00075 * 3 2 1 6 6 H 1.48508 * 109.46780 * 149.99974 * 3 2 1 7 7 C 1.37874 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00309 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.50692 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.47333 * 180.02562 * 14 12 11 16 16 C 1.36831 * 125.06352 * 264.97445 * 15 14 12 17 17 C 1.34236 * 109.93005 * 180.02562 * 16 15 14 18 18 C 1.46485 * 106.99785 * 0.02562 * 17 16 15 19 19 C 1.39627 * 134.03205 * 179.97438 * 18 17 16 20 20 C 1.36625 * 119.76691 * 180.02562 * 19 18 17 21 21 N 1.48020 * 119.73752 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99894 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99903 * 179.72597 * 21 20 19 24 24 C 1.38832 * 120.52654 * 0.25683 * 20 19 18 25 25 C 1.37749 * 120.66406 * 359.48083 * 24 20 19 26 26 C 1.37679 * 125.06150 * 85.00278 * 15 14 12 27 27 H 0.96999 * 120.00101 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47016 * 60.00316 * 9 7 2 29 29 H 1.09002 * 109.47287 * 300.00175 * 9 7 2 30 30 H 1.09000 * 109.47141 * 60.00153 * 10 9 7 31 31 H 1.09008 * 109.47437 * 300.00021 * 10 9 7 32 32 H 1.09003 * 109.46900 * 60.00018 * 14 12 11 33 33 H 1.09002 * 109.47314 * 300.01277 * 14 12 11 34 34 H 1.08008 * 125.03332 * 0.04701 * 16 15 14 35 35 H 1.08001 * 126.49732 * 180.02562 * 17 16 15 36 36 H 1.08006 * 120.11648 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.66683 * 179.72907 * 24 20 19 38 38 H 1.08002 * 120.11003 * 180.23574 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 -0.0011 12 6 2.2505 -6.0453 -0.0018 13 8 3.4571 -5.9819 -0.0013 14 6 1.5665 -7.3880 -0.0018 15 7 2.5755 -8.4501 -0.0019 16 6 3.0457 -9.0875 -1.1177 17 6 3.9601 -10.0062 -0.7686 18 6 4.0852 -9.9532 0.6899 19 6 4.8565 -10.6480 1.6237 20 6 4.7383 -10.3557 2.9531 21 7 5.5560 -11.0930 3.9425 22 8 6.3300 -11.9567 3.5703 23 8 5.4581 -10.8328 5.1283 24 6 3.8532 -9.3767 3.3839 25 6 3.0866 -8.6755 2.4794 26 6 3.1914 -8.9560 1.1207 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6042 0.8895 31 1 2.8721 -3.6042 -0.8906 32 1 0.9433 -7.4782 -0.8916 33 1 0.9439 -7.4787 0.8883 34 1 2.7285 -8.8816 -2.1294 35 1 4.5009 -10.6604 -1.4365 36 1 5.5442 -11.4138 1.2963 37 1 3.7678 -9.1600 4.4384 38 1 2.4037 -7.9131 2.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062310345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:43 Heat of formation + Delta-G solvation = -28.680400 kcal Electronic energy + Delta-G solvation = -24929.666281 eV Core-core repulsion = 20934.410785 eV Total energy + Delta-G solvation = -3995.255496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43269 -41.88393 -40.17865 -37.77084 -36.64669 -36.43082 -33.69723 -33.45606 -31.73817 -30.55547 -29.87434 -28.14621 -26.17387 -25.03922 -23.40685 -22.29030 -21.80685 -21.02900 -20.56276 -19.20579 -18.80354 -17.99910 -17.69094 -17.60575 -16.84552 -16.51796 -16.37651 -15.95925 -14.94810 -14.80458 -14.75236 -14.50995 -14.06021 -13.76730 -13.49145 -13.28045 -13.05358 -12.60877 -12.47994 -12.31804 -11.75893 -11.59823 -11.44359 -11.29487 -11.23677 -11.23496 -10.92116 -10.89212 -10.63880 -10.37494 -9.89471 -9.82417 -9.45653 -9.03090 -8.57093 -8.38645 -6.23015 -4.28262 -0.22347 0.47270 1.26971 1.30372 1.86629 2.07827 2.18156 2.86877 3.13925 3.20201 3.26974 3.30809 3.88352 4.07891 4.18840 4.27166 4.29717 4.52241 4.60060 4.71834 4.73556 4.90373 4.93767 5.13966 5.22474 5.36604 5.49848 5.54703 5.81787 5.84748 5.85687 6.05395 6.24971 6.41387 6.46702 6.55310 6.63251 7.36552 7.43567 7.56108 7.67889 7.83154 8.08179 8.76957 9.37180 10.88299 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002335 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.131614 B =11987.053672 C =12836.156540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.352 6.352 12 C 0.432 3.568 13 O -0.498 6.498 14 C 0.112 3.888 15 N -0.462 5.462 16 C 0.069 3.931 17 C -0.182 4.182 18 C -0.113 4.113 19 C 0.007 3.993 20 C -0.070 4.070 21 N 0.037 4.963 22 O -0.173 6.173 23 O -0.167 6.167 24 C -0.051 4.051 25 C -0.114 4.114 26 C 0.147 3.853 27 H 0.265 0.735 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -22.106 -0.662 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.273 3.727 13 O -0.386 6.386 14 C -0.011 4.011 15 N -0.145 5.145 16 C -0.055 4.055 17 C -0.206 4.206 18 C -0.118 4.118 19 C -0.012 4.012 20 C -0.155 4.155 21 N 0.554 4.446 22 O -0.386 6.386 23 O -0.382 6.382 24 C -0.072 4.072 25 C -0.135 4.135 26 C 0.038 3.962 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.197 0.803 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.962 -21.314 -1.191 21.438 hybrid contribution 0.754 1.005 0.173 1.269 sum 2.717 -20.309 -1.018 20.515 Atomic orbital electron populations 1.69959 1.06113 1.27185 1.49458 1.24978 0.94939 0.99463 0.94668 0.86457 0.79791 0.82671 0.78333 1.20401 1.20933 1.19675 1.20942 0.93178 0.89997 1.52672 0.92248 1.19185 0.94123 0.88891 0.98964 1.23767 0.96501 0.78107 1.01186 1.86518 1.42309 1.15686 1.82273 1.23656 0.87058 0.87721 0.74304 1.90727 1.15378 1.87997 1.44519 1.21315 0.89217 0.81810 1.08769 1.43672 1.35179 1.30484 1.05153 1.22045 0.97432 0.94647 0.91327 1.21715 1.03114 1.03936 0.91830 1.18928 0.99564 0.99023 0.94302 1.20050 0.95446 0.96603 0.89149 1.20413 1.03172 1.03153 0.88759 1.43547 0.99634 0.99577 1.01821 1.94520 1.33289 1.25798 1.85032 1.94528 1.72546 1.70924 1.00238 1.20520 0.92670 0.92425 1.01542 1.19997 1.02643 1.02101 0.88715 1.18461 0.94261 0.94799 0.88664 0.92576 0.95277 0.95268 0.92082 0.92099 0.84240 0.84973 0.80268 0.82290 0.82880 0.82714 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.55 5.40 37.16 0.20 1.75 16 11 O -0.35 -5.93 10.22 -39.26 -0.40 -6.33 16 12 C 0.43 6.03 8.03 36.00 0.29 6.32 16 13 O -0.50 -8.71 16.17 -18.75 -0.30 -9.01 16 14 C 0.11 0.91 6.59 -5.20 -0.03 0.88 16 15 N -0.46 -4.27 2.27 -115.71 -0.26 -4.54 16 16 C 0.07 0.53 11.27 -16.73 -0.19 0.34 16 17 C -0.18 -1.47 11.08 -37.67 -0.42 -1.88 16 18 C -0.11 -1.14 6.37 -105.14 -0.67 -1.81 16 19 C 0.01 0.07 9.55 -39.65 -0.38 -0.31 16 20 C -0.07 -0.80 6.81 -80.31 -0.55 -1.34 16 21 N 0.04 0.49 4.45 33.79 0.15 0.64 16 22 O -0.17 -2.35 18.40 -29.46 -0.54 -2.89 16 23 O -0.17 -2.31 18.42 -29.46 -0.54 -2.85 16 24 C -0.05 -0.52 9.52 -39.54 -0.38 -0.89 16 25 C -0.11 -1.11 10.00 -39.43 -0.39 -1.50 16 26 C 0.15 1.54 6.80 -83.99 -0.57 0.97 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.23 8.13 -51.92 -0.42 0.81 16 32 H 0.14 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.29 7.57 -52.48 -0.40 0.90 16 37 H 0.16 1.34 7.58 -52.49 -0.40 0.94 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -33.51 349.62 -8.70 -42.21 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.14 Total: -3.60 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.65 Total: -9.99 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.62 Total: -28.54 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.79 Total: -21.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.51 -8.70 -42.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062310345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.530 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds