Wall clock time and date at job start Tue Mar 31 2020 12:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46858 * 2 1 4 4 C 1.50696 * 109.47563 * 119.99813 * 2 1 3 5 5 H 1.07999 * 120.00242 * 119.99407 * 4 2 1 6 6 C 1.37879 * 120.00217 * 300.00209 * 4 2 1 7 7 N 1.31516 * 120.00372 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99765 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47281 * 89.99998 * 8 6 4 10 10 H 1.48501 * 109.46794 * 209.99861 * 8 6 4 11 11 H 1.48499 * 109.46708 * 329.99847 * 8 6 4 12 12 N 1.46501 * 109.47136 * 240.00234 * 2 1 3 13 13 C 1.46500 * 119.99517 * 299.99809 * 12 2 1 14 14 C 1.34777 * 120.00151 * 119.99697 * 12 2 1 15 15 O 1.21538 * 120.00015 * 1.93073 * 14 12 2 16 16 C 1.47923 * 119.99757 * 181.92909 * 14 12 2 17 17 C 1.38373 * 119.27423 * 172.70447 * 16 14 12 18 18 C 1.40589 * 118.54183 * 179.97438 * 17 16 14 19 19 C 1.40266 * 122.09289 * 179.97438 * 18 17 16 20 20 C 1.36285 * 119.48225 * 180.02562 * 19 18 17 21 21 C 1.39300 * 120.97063 * 0.02562 * 20 19 18 22 22 C 1.36300 * 121.08518 * 359.97438 * 21 20 19 23 23 C 1.40195 * 119.57572 * 0.27450 * 22 21 20 24 24 C 1.40867 * 121.86495 * 180.21878 * 23 22 21 25 25 Cl 1.73601 * 119.89816 * 359.50712 * 24 23 22 26 26 N 1.30993 * 120.19992 * 179.75652 * 24 23 22 27 27 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46494 * 299.99775 * 1 2 3 29 29 H 1.08990 * 109.47172 * 59.99880 * 1 2 3 30 30 H 0.96993 * 120.00347 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47119 * 263.72376 * 13 12 2 32 32 H 1.09005 * 109.47587 * 23.72837 * 13 12 2 33 33 H 1.09004 * 109.46759 * 143.73027 * 13 12 2 34 34 H 1.07999 * 120.72678 * 0.02562 * 17 16 14 35 35 H 1.08003 * 120.25995 * 0.04783 * 19 18 17 36 36 H 1.07999 * 119.51422 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.45619 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.20921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1375 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9773 1.9954 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.1157 1.1173 -1.8737 16 6 3.2509 -0.7198 -3.3123 17 6 3.9158 0.0072 -4.2839 18 6 4.3446 -0.6587 -5.4455 19 6 5.0242 0.0053 -6.4773 20 6 5.4153 -0.6926 -7.5806 21 6 5.1495 -2.0549 -7.6986 22 6 4.4913 -2.7312 -6.7152 23 6 4.0688 -2.0457 -5.5675 24 6 3.3890 -2.6976 -4.5200 25 17 3.0427 -4.3947 -4.6372 26 7 3.0131 -2.0261 -3.4600 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.9035 -0.5279 4.4375 31 1 2.4696 -2.7349 -1.0704 32 1 0.7456 -2.3296 -0.8912 33 1 1.5147 -2.2585 -2.4949 34 1 4.1020 1.0629 -4.1525 35 1 5.2363 1.0613 -6.3979 36 1 5.9383 -0.1817 -8.3756 37 1 5.4702 -2.5838 -8.5839 38 1 4.2923 -3.7873 -6.8216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063092651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:02 Heat of formation + Delta-G solvation = 42.624211 kcal Electronic energy + Delta-G solvation = -23788.212399 eV Core-core repulsion = 20236.758068 eV Total energy + Delta-G solvation = -3551.454331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21033 -39.22931 -37.51880 -36.77514 -35.62064 -33.05093 -32.79089 -31.65040 -30.42586 -29.65995 -26.17896 -25.21073 -24.78483 -24.29994 -22.51053 -21.71191 -19.33227 -18.13383 -17.73780 -16.91175 -16.68974 -15.79534 -15.57021 -15.48545 -15.37387 -14.62524 -14.38598 -14.15895 -13.99430 -13.54178 -13.01060 -12.90496 -12.76512 -12.38488 -12.24999 -12.16499 -11.84069 -11.70681 -11.65339 -11.44573 -11.33739 -11.08913 -10.67575 -10.27211 -10.12578 -9.87808 -9.59309 -9.44761 -9.29608 -8.96041 -8.60977 -8.34530 -7.66340 -6.11346 -4.11972 -0.08827 0.40599 1.49741 1.51594 2.39845 3.25372 3.35412 3.38420 3.40816 3.58111 3.91486 4.16432 4.24843 4.37400 4.38664 4.56235 4.59555 4.83432 4.94706 5.04765 5.21338 5.38168 5.43072 5.56568 5.60914 5.99145 6.03147 6.06283 6.12495 6.24686 6.33088 6.39165 6.42165 6.50990 6.73011 6.87223 7.10690 7.30151 7.45990 7.64082 8.16990 8.47556 8.77197 8.92158 9.48890 11.01460 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003615 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.326542 B = 7743.191188 C = 8587.268584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.560 5.560 13 C 0.087 3.913 14 C 0.556 3.444 15 O -0.547 6.547 16 C 0.086 3.914 17 C -0.085 4.085 18 C -0.024 4.024 19 C -0.099 4.099 20 C -0.099 4.099 21 C -0.110 4.110 22 C -0.089 4.089 23 C -0.085 4.085 24 C 0.204 3.796 25 Cl -0.018 7.018 26 N -0.439 5.439 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -3.892 -24.796 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.125 3.875 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.287 5.287 13 C -0.056 4.056 14 C 0.341 3.659 15 O -0.426 6.426 16 C -0.040 4.040 17 C -0.106 4.106 18 C -0.029 4.029 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.088 4.088 24 C 0.024 3.976 25 Cl 0.010 6.990 26 N -0.152 5.152 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.177 0.823 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.527 -3.745 -23.666 24.218 hybrid contribution -0.227 0.737 -0.239 0.807 sum 3.300 -3.009 -23.905 24.318 Atomic orbital electron populations 1.22465 0.98842 1.01310 0.99299 1.19401 0.90156 0.95198 0.82758 0.91885 1.21144 1.32682 1.14237 0.88321 0.90223 1.24861 0.95687 0.96585 0.95580 1.69873 1.45239 1.40165 0.97940 0.86921 0.80463 0.83866 0.77482 1.20367 1.22122 1.18784 1.47821 1.46833 1.12571 1.21511 1.22154 1.00495 0.81059 1.01937 1.17677 0.80142 0.85791 0.82307 1.90747 1.58246 1.16957 1.76647 1.21135 0.98503 0.87997 0.96374 1.22299 0.94777 1.02094 0.91411 1.18084 0.97704 0.91984 0.95091 1.21053 0.97477 1.00469 0.92741 1.21051 0.98563 0.94425 0.97803 1.20998 0.98204 0.94562 0.99059 1.21086 0.97097 1.00457 0.92244 1.18594 1.00796 0.93721 0.95711 1.22005 0.96104 0.88113 0.91404 1.98408 1.93445 1.09808 1.97297 1.67485 1.17132 1.08595 1.22014 0.92311 0.93022 0.94762 0.92443 0.92870 0.91855 0.89355 0.82259 0.84310 0.85113 0.85148 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.66 37.16 0.32 -3.25 16 2 C 0.23 5.65 2.22 -69.08 -0.15 5.50 16 3 H 0.06 1.71 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.99 8.95 -34.44 -0.31 -15.30 16 5 H 0.08 2.47 7.89 -52.49 -0.41 2.05 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.88 22.09 24.37 -169.99 -4.14 17.95 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.23 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.56 -12.41 2.75 -176.35 -0.49 -12.90 16 13 C 0.09 1.65 8.48 59.85 0.51 2.16 16 14 C 0.56 11.84 7.65 -12.29 -0.09 11.75 16 15 O -0.55 -12.97 15.62 5.33 0.08 -12.89 16 16 C 0.09 1.47 6.61 -83.08 -0.55 0.92 16 17 C -0.08 -1.20 9.41 -38.65 -0.36 -1.56 16 18 C -0.02 -0.28 5.74 -106.83 -0.61 -0.89 16 19 C -0.10 -0.86 9.81 -39.52 -0.39 -1.25 16 20 C -0.10 -0.68 9.95 -39.89 -0.40 -1.08 16 21 C -0.11 -0.76 9.95 -39.88 -0.40 -1.16 16 22 C -0.09 -0.78 9.45 -39.54 -0.37 -1.15 16 23 C -0.08 -0.99 5.75 -106.75 -0.61 -1.61 16 24 C 0.20 2.71 7.35 -16.92 -0.12 2.59 16 25 Cl -0.02 -0.20 27.72 -51.86 -1.44 -1.64 16 26 N -0.44 -7.03 5.89 -6.65 -0.04 -7.07 16 27 H 0.06 1.22 6.67 -51.93 -0.35 0.88 16 28 H 0.05 1.18 3.27 -51.92 -0.17 1.01 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.19 6.45 -51.93 -0.33 0.85 16 33 H 0.09 1.51 5.25 -52.38 -0.28 1.24 16 34 H 0.16 2.10 7.62 -52.49 -0.40 1.70 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.98 7.03 -52.49 -0.37 0.61 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -33.23 325.16 -7.91 -41.13 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.91 Total: -0.64 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.64 Total: -2.23 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.25 Total: -46.58 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.44 Total: -1.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.23 -7.91 -41.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063092651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.757 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds