Wall clock time and date at job start Tue Mar 31 2020 12:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46858 * 2 1 4 4 C 1.50696 * 109.47563 * 119.99813 * 2 1 3 5 5 H 1.07999 * 120.00242 * 119.99407 * 4 2 1 6 6 C 1.37879 * 120.00217 * 300.00209 * 4 2 1 7 7 N 1.31516 * 120.00372 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99765 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47281 * 89.99998 * 8 6 4 10 10 H 1.48501 * 109.46794 * 209.99861 * 8 6 4 11 11 H 1.48499 * 109.46708 * 329.99847 * 8 6 4 12 12 N 1.46501 * 109.47136 * 240.00234 * 2 1 3 13 13 C 1.46500 * 119.99517 * 299.99809 * 12 2 1 14 14 C 1.34777 * 120.00151 * 119.99697 * 12 2 1 15 15 O 1.21538 * 120.00015 * 1.93073 * 14 12 2 16 16 C 1.47923 * 119.99757 * 181.92909 * 14 12 2 17 17 C 1.38373 * 119.27423 * 172.70447 * 16 14 12 18 18 C 1.40589 * 118.54183 * 179.97438 * 17 16 14 19 19 C 1.40266 * 122.09289 * 179.97438 * 18 17 16 20 20 C 1.36285 * 119.48225 * 180.02562 * 19 18 17 21 21 C 1.39300 * 120.97063 * 0.02562 * 20 19 18 22 22 C 1.36300 * 121.08518 * 359.97438 * 21 20 19 23 23 C 1.40195 * 119.57572 * 0.27450 * 22 21 20 24 24 C 1.40867 * 121.86495 * 180.21878 * 23 22 21 25 25 Cl 1.73601 * 119.89816 * 359.50712 * 24 23 22 26 26 N 1.30993 * 120.19992 * 179.75652 * 24 23 22 27 27 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46494 * 299.99775 * 1 2 3 29 29 H 1.08990 * 109.47172 * 59.99880 * 1 2 3 30 30 H 0.96993 * 120.00347 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47119 * 263.72376 * 13 12 2 32 32 H 1.09005 * 109.47587 * 23.72837 * 13 12 2 33 33 H 1.09004 * 109.46759 * 143.73027 * 13 12 2 34 34 H 1.07999 * 120.72678 * 0.02562 * 17 16 14 35 35 H 1.08003 * 120.25995 * 0.04783 * 19 18 17 36 36 H 1.07999 * 119.51422 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.45619 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.20921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1375 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9773 1.9954 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.1157 1.1173 -1.8737 16 6 3.2509 -0.7198 -3.3123 17 6 3.9158 0.0072 -4.2839 18 6 4.3446 -0.6587 -5.4455 19 6 5.0242 0.0053 -6.4773 20 6 5.4153 -0.6926 -7.5806 21 6 5.1495 -2.0549 -7.6986 22 6 4.4913 -2.7312 -6.7152 23 6 4.0688 -2.0457 -5.5675 24 6 3.3890 -2.6976 -4.5200 25 17 3.0427 -4.3947 -4.6372 26 7 3.0131 -2.0261 -3.4600 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.9035 -0.5279 4.4375 31 1 2.4696 -2.7349 -1.0704 32 1 0.7456 -2.3296 -0.8912 33 1 1.5147 -2.2585 -2.4949 34 1 4.1020 1.0629 -4.1525 35 1 5.2363 1.0613 -6.3979 36 1 5.9383 -0.1817 -8.3756 37 1 5.4702 -2.5838 -8.5839 38 1 4.2923 -3.7873 -6.8216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063092651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:01 Heat of formation + Delta-G solvation = 21.588809 kcal Electronic energy + Delta-G solvation = -23789.124563 eV Core-core repulsion = 20236.758068 eV Total energy + Delta-G solvation = -3552.366494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22294 -40.67417 -38.46537 -37.77583 -37.40108 -34.81901 -33.90406 -32.89665 -31.88713 -30.73863 -27.78586 -27.20033 -26.01473 -25.21393 -23.35430 -23.20568 -20.88830 -19.20369 -19.00421 -18.63541 -17.98962 -17.35914 -16.99020 -16.74795 -16.34683 -16.18155 -15.49007 -15.24816 -15.02237 -14.95004 -14.73160 -14.25204 -14.14925 -13.94279 -13.59092 -13.58155 -13.31069 -13.09156 -12.78338 -12.63520 -12.57066 -12.41825 -12.10445 -12.08245 -11.64533 -11.42811 -11.29702 -11.12507 -10.82369 -10.33860 -10.19228 -9.55262 -9.12471 -8.36982 -6.42961 -0.99990 -0.47281 0.53314 0.71553 1.25544 1.30665 1.34558 1.44238 2.06600 2.20956 2.26417 2.87272 2.97018 3.02640 3.38134 3.52668 3.62130 3.86148 3.97995 4.22822 4.28244 4.37455 4.42113 4.51353 4.55120 4.58257 4.64645 4.77015 4.90736 4.96389 4.97386 5.14350 5.27382 5.28402 5.35195 5.41330 5.44665 5.65785 5.80112 6.12847 6.35357 6.55869 6.62174 7.07665 7.25102 8.79554 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003615 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.326542 B = 7743.191188 C = 8587.268584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.229 3.771 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.037 0.963 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.946 3.054 9 H -0.251 1.251 10 H -0.292 1.292 11 H -0.258 1.258 12 N -0.573 5.573 13 C 0.097 3.903 14 C 0.551 3.449 15 O -0.583 6.583 16 C 0.048 3.952 17 C -0.070 4.070 18 C -0.040 4.040 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.090 4.090 24 C 0.199 3.801 25 Cl -0.003 7.003 26 N -0.468 5.468 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -3.673 -29.001 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.055 0.945 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.772 3.228 9 H -0.176 1.176 10 H -0.219 1.219 11 H -0.183 1.183 12 N -0.301 5.301 13 C -0.045 4.045 14 C 0.339 3.661 15 O -0.465 6.465 16 C -0.076 4.076 17 C -0.091 4.091 18 C -0.045 4.045 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.094 4.094 24 C 0.019 3.981 25 Cl 0.025 6.975 26 N -0.181 5.181 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.187 0.813 37 H 0.187 0.813 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.655 -3.551 -27.895 28.357 hybrid contribution -0.028 0.540 0.775 0.945 sum 3.627 -3.011 -27.120 27.527 Atomic orbital electron populations 1.22320 0.96195 1.02349 1.00252 1.19115 0.92144 0.93570 0.82580 0.94354 1.21306 1.32070 1.13106 0.90383 0.94450 1.25705 0.97132 0.99790 0.95018 1.70010 1.47020 1.42207 0.98644 0.85908 0.79762 0.79765 0.77400 1.17639 1.21935 1.18287 1.47866 1.47612 1.13540 1.21071 1.22183 0.99588 0.79335 1.03426 1.18310 0.78961 0.85576 0.83267 1.90689 1.59395 1.18564 1.77873 1.20432 1.02365 0.88974 0.95827 1.22390 0.93189 1.02041 0.91520 1.18276 0.98772 0.92289 0.95174 1.21363 0.96891 1.01667 0.92349 1.21566 0.96748 0.94461 0.97610 1.21540 0.95263 0.94694 0.99190 1.21330 0.97711 1.01363 0.91714 1.18818 1.00477 0.93856 0.96214 1.22261 0.95999 0.88679 0.91195 1.98405 1.93387 1.08476 1.97200 1.67136 1.18996 1.08298 1.23678 0.91299 0.93370 0.92304 0.92110 0.94576 0.91894 0.86993 0.82107 0.82376 0.81257 0.81290 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.73 8.66 71.98 0.62 -6.11 16 2 C 0.23 11.81 2.22 44.24 0.10 11.91 16 3 H 0.04 2.17 5.96 -2.39 -0.01 2.15 16 4 C -0.53 -31.75 8.95 25.60 0.23 -31.52 16 5 H 0.04 2.48 7.89 -2.91 -0.02 2.46 16 6 C 0.02 1.33 5.45 84.65 0.46 1.79 16 7 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 46.14 24.37 68.60 1.67 47.81 16 9 H -0.25 -11.19 6.87 99.48 0.68 -10.51 16 10 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 11 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 12 N -0.57 -26.66 2.75 -830.12 -2.28 -28.94 16 13 C 0.10 3.88 8.48 127.77 1.08 4.96 16 14 C 0.55 24.74 7.65 86.81 0.66 25.40 16 15 O -0.58 -29.16 15.62 -3.84 -0.06 -29.22 16 16 C 0.05 1.72 6.61 41.48 0.27 1.99 16 17 C -0.07 -2.01 9.41 22.88 0.22 -1.79 16 18 C -0.04 -0.88 5.74 -21.29 -0.12 -1.00 16 19 C -0.10 -1.45 9.81 22.31 0.22 -1.23 16 20 C -0.09 -0.70 9.95 22.07 0.22 -0.48 16 21 C -0.09 -0.74 9.95 22.07 0.22 -0.52 16 22 C -0.10 -1.41 9.45 22.29 0.21 -1.20 16 23 C -0.09 -1.96 5.75 -21.24 -0.12 -2.08 16 24 C 0.20 5.23 7.35 85.46 0.63 5.86 16 25 Cl 0.00 -0.07 27.72 -2.72 -0.08 -0.15 16 26 N -0.47 -15.38 5.89 -174.95 -1.03 -16.41 16 27 H 0.07 2.84 6.67 -2.39 -0.02 2.83 16 28 H 0.05 2.13 3.27 -2.38 -0.01 2.12 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.45 6.45 -2.38 -0.02 2.43 16 33 H 0.11 3.96 5.25 -3.29 -0.02 3.95 16 34 H 0.16 4.34 7.62 -2.91 -0.02 4.32 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 37 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.15 1.64 7.03 -2.91 -0.02 1.62 16 Total: -1.00 -77.61 325.16 4.44 -73.16 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.02 Total: 7.09 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 4.90 Total: 5.97 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.02 Total: -104.68 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -77.61 4.44 -73.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063092651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.753 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds