Wall clock time and date at job start Tue Mar 31 2020 12:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47259 * 2 1 4 4 C 1.37090 * 120.00186 * 263.55313 * 3 2 1 5 5 H 1.07999 * 120.00162 * 188.38940 * 4 3 2 6 6 C 1.38952 * 120.00029 * 8.39226 * 4 3 2 7 7 N 1.31404 * 119.99950 * 25.16711 * 6 4 3 8 8 Si 1.86800 * 119.99941 * 205.17153 * 6 4 3 9 9 H 1.48506 * 109.47108 * 84.98522 * 8 6 4 10 10 H 1.48499 * 109.47116 * 204.98100 * 8 6 4 11 11 H 1.48502 * 109.47302 * 324.98404 * 8 6 4 12 12 C 1.34780 * 119.99700 * 83.55426 * 3 2 1 13 13 O 1.21290 * 119.99579 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00217 * 0.02562 * 12 3 2 15 15 C 1.50693 * 109.46923 * 180.02562 * 14 12 3 16 16 C 1.33861 * 122.08351 * 125.00190 * 15 14 12 17 17 S 1.76254 * 108.19720 * 180.02562 * 16 15 14 18 18 C 1.76168 * 89.83008 * 0.02562 * 17 16 15 19 19 C 1.47815 * 125.47359 * 179.97438 * 18 17 16 20 20 C 1.39692 * 120.12605 * 0.04806 * 19 18 17 21 21 N 1.31942 * 119.84489 * 179.67868 * 20 19 18 22 22 C 1.32246 * 120.11412 * 0.57460 * 21 20 19 23 23 C 1.38438 * 120.25706 * 359.44276 * 22 21 20 24 24 N 1.32006 * 120.15128 * 0.25742 * 23 22 21 25 25 N 1.30240 * 109.06087 * 0.23863 * 18 17 16 26 26 H 1.09009 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47523 * 300.00216 * 1 2 3 28 28 H 1.09010 * 109.47164 * 60.00444 * 1 2 3 29 29 H 1.09006 * 109.47427 * 239.99855 * 2 1 3 30 30 H 1.09004 * 109.46857 * 120.00199 * 2 1 3 31 31 H 0.97008 * 119.99891 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46903 * 59.99861 * 14 12 3 33 33 H 1.09002 * 109.46662 * 299.99978 * 14 12 3 34 34 H 1.08005 * 125.89837 * 0.03962 * 16 15 14 35 35 H 1.08000 * 120.08047 * 359.97122 * 20 19 18 36 36 H 1.07997 * 119.86990 * 179.72010 * 22 21 20 37 37 H 1.08000 * 119.92530 * 180.27490 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9830 -1.1797 5 1 2.8580 2.9477 -1.1694 6 6 2.1068 1.3519 -2.3888 7 7 1.1283 0.4789 -2.4732 8 14 3.1407 1.7445 -3.8943 9 1 4.3648 0.9038 -3.8871 10 1 2.3542 1.4630 -5.1220 11 1 3.5251 3.1787 -3.8705 12 6 2.1194 2.0601 1.1599 13 8 2.5233 3.2038 1.1598 14 6 1.7306 1.3984 2.4568 15 6 1.9351 2.3647 3.5949 16 6 0.9518 2.6773 4.4477 17 16 1.5865 3.8286 5.6216 18 6 3.1552 3.7711 4.8220 19 6 4.3556 4.5297 5.2324 20 6 4.3033 5.3791 6.3402 21 7 5.3799 6.0487 6.7055 22 6 6.5030 5.9254 6.0183 23 6 6.5597 5.0853 4.9194 24 7 5.4905 4.4059 4.5484 25 7 3.0860 2.9571 3.8076 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9431 0.0381 -3.3172 32 1 2.3497 0.5151 2.6139 33 1 0.6819 1.1041 2.4144 34 1 -0.0563 2.2905 4.4211 35 1 3.3852 5.4838 6.8993 36 1 7.3806 6.4789 6.3181 37 1 7.4810 4.9853 4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066352635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:56 Heat of formation + Delta-G solvation = 84.472007 kcal Electronic energy + Delta-G solvation = -23344.448237 eV Core-core repulsion = 19829.145020 eV Total energy + Delta-G solvation = -3515.303217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17658 -39.72267 -38.13453 -34.99019 -34.52881 -32.94990 -31.87182 -30.72451 -29.37254 -27.97427 -26.19218 -24.80523 -24.61210 -22.73646 -22.07593 -19.78339 -19.08238 -17.76693 -17.28312 -17.08973 -16.80242 -16.42923 -16.03790 -15.19652 -14.84839 -14.57095 -14.13331 -14.03004 -13.75605 -13.52898 -13.09094 -12.94731 -12.72171 -12.40037 -11.99308 -11.73856 -11.73547 -11.47704 -11.19135 -11.14261 -10.98283 -10.70340 -10.29271 -10.10388 -10.05658 -9.81515 -9.47668 -9.29588 -9.20359 -8.84221 -8.48702 -8.16421 -7.68907 -6.30639 -3.70666 -0.02843 0.84445 1.21420 1.28197 1.67068 3.00430 3.20401 3.29685 3.35204 3.57724 3.66595 3.96585 3.99748 4.14453 4.18734 4.33258 4.77520 4.92112 4.99743 5.08367 5.16451 5.19312 5.25436 5.47469 5.78834 5.86146 6.01754 6.02656 6.17406 6.34599 6.57101 6.64731 6.76486 7.02477 7.29121 7.51004 7.53535 7.76901 7.97972 8.16233 8.58319 9.26280 9.51270 10.08173 10.70591 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.003519 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.848231 B = 7954.466329 C = 9314.781711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.119 3.881 3 N -0.445 5.445 4 C -0.301 4.301 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.451 3.549 13 O -0.573 6.573 14 C -0.066 4.066 15 C 0.104 3.896 16 C -0.232 4.232 17 S 0.080 5.920 18 C 0.093 3.907 19 C 0.159 3.841 20 C 0.067 3.933 21 N -0.432 5.432 22 C 0.047 3.953 23 C 0.062 3.938 24 N -0.395 5.395 25 N -0.379 5.379 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 2.777 16.911 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 N -0.165 5.165 4 C -0.429 4.429 5 H 0.120 0.880 6 C -0.173 4.173 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.238 3.762 13 O -0.456 6.456 14 C -0.109 4.109 15 C -0.030 4.030 16 C -0.371 4.371 17 S 0.333 5.667 18 C -0.184 4.184 19 C 0.017 3.983 20 C -0.095 4.095 21 N -0.146 5.146 22 C -0.114 4.114 23 C -0.100 4.100 24 N -0.111 5.111 25 N -0.092 5.092 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.200 0.800 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.854 3.659 17.285 17.897 hybrid contribution 0.111 -0.606 -1.597 1.711 sum 2.966 3.052 15.688 16.255 Atomic orbital electron populations 1.22139 0.96810 0.99784 1.01949 1.21448 0.94371 0.83844 1.00773 1.43764 1.56174 1.11192 1.05377 1.19702 1.35637 1.05436 0.82115 0.87958 1.25137 0.96095 0.97332 0.98768 1.70104 1.25153 1.29140 1.26560 0.86088 0.80036 0.79154 0.80337 1.20426 1.21220 1.19596 1.19536 0.85303 0.87034 0.84327 1.90557 1.50569 1.18108 1.86411 1.20386 1.03197 0.96414 0.90874 1.19844 0.87144 0.98734 0.97244 1.26933 1.04909 1.04839 1.00449 1.84479 1.07171 1.42914 1.32088 1.25054 0.94881 1.02002 0.96500 1.19592 0.90896 0.94785 0.93009 1.23603 0.98275 0.93035 0.94609 1.68451 0.99057 1.18970 1.28107 1.23915 0.97004 0.97207 0.93230 1.23962 0.97784 0.92815 0.95464 1.68633 0.97998 1.18487 1.25992 1.66230 1.25262 1.05409 1.12251 0.94354 0.95885 0.88935 0.87989 0.95077 0.92418 0.88615 0.88387 0.79959 0.81343 0.80854 0.80637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.64 37.16 0.36 -2.65 16 2 C 0.12 2.63 5.07 -4.05 -0.02 2.61 16 3 N -0.45 -11.43 2.64 -114.81 -0.30 -11.73 16 4 C -0.30 -8.47 9.43 -14.94 -0.14 -8.61 16 5 H 0.10 3.10 7.31 -52.49 -0.38 2.71 16 6 C 0.03 0.75 4.90 -17.47 -0.09 0.67 16 7 N -0.87 -22.22 8.65 55.50 0.48 -21.74 16 8 Si 0.92 20.83 29.62 -169.99 -5.04 15.80 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 12 C 0.45 11.26 7.53 -10.98 -0.08 11.18 16 13 O -0.57 -16.59 15.00 5.55 0.08 -16.51 16 14 C -0.07 -1.25 4.78 -29.04 -0.14 -1.38 16 15 C 0.10 1.91 5.62 -84.41 -0.47 1.44 16 16 C -0.23 -3.34 11.02 29.20 0.32 -3.02 16 17 S 0.08 1.01 22.40 -107.50 -2.41 -1.40 16 18 C 0.09 1.55 7.43 -14.31 -0.11 1.44 16 19 C 0.16 2.42 6.75 -82.86 -0.56 1.86 16 20 C 0.07 0.81 10.79 -16.96 -0.18 0.63 16 21 N -0.43 -4.96 10.49 -12.72 -0.13 -5.09 16 22 C 0.05 0.44 11.22 -17.30 -0.19 0.25 16 23 C 0.06 0.69 11.22 -17.40 -0.20 0.49 16 24 N -0.40 -6.32 10.42 -9.66 -0.10 -6.42 16 25 N -0.38 -7.64 9.57 -7.56 -0.07 -7.71 16 26 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.02 0.42 6.45 -51.93 -0.34 0.08 16 28 H 0.09 2.18 6.38 -51.92 -0.33 1.85 16 29 H 0.10 2.44 5.83 -51.93 -0.30 2.14 16 30 H 0.03 0.59 6.71 -51.93 -0.35 0.24 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.10 1.66 7.42 -51.93 -0.39 1.28 16 33 H 0.10 1.60 6.28 -51.93 -0.33 1.27 16 34 H 0.18 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.17 1.59 7.30 -52.49 -0.38 1.21 16 36 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -34.86 329.81 -7.64 -42.51 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.62 Total: 2.43 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.50 Total: 4.90 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.13 Total: -52.70 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.08 Total: -16.51 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.04 Total: 15.80 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.41 Total: -1.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.86 -7.64 -42.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066352635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.978 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds