Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47259 * 2 1 4 4 C 1.37090 * 120.00186 * 263.55313 * 3 2 1 5 5 H 1.07999 * 120.00162 * 188.38940 * 4 3 2 6 6 C 1.38952 * 120.00029 * 8.39226 * 4 3 2 7 7 N 1.31404 * 119.99950 * 25.16711 * 6 4 3 8 8 Si 1.86800 * 119.99941 * 205.17153 * 6 4 3 9 9 H 1.48506 * 109.47108 * 84.98522 * 8 6 4 10 10 H 1.48499 * 109.47116 * 204.98100 * 8 6 4 11 11 H 1.48502 * 109.47302 * 324.98404 * 8 6 4 12 12 C 1.34780 * 119.99700 * 83.55426 * 3 2 1 13 13 O 1.21290 * 119.99579 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00217 * 0.02562 * 12 3 2 15 15 C 1.50693 * 109.46923 * 180.02562 * 14 12 3 16 16 C 1.33861 * 122.08351 * 125.00190 * 15 14 12 17 17 S 1.76254 * 108.19720 * 180.02562 * 16 15 14 18 18 C 1.76168 * 89.83008 * 0.02562 * 17 16 15 19 19 C 1.47815 * 125.47359 * 179.97438 * 18 17 16 20 20 C 1.39692 * 120.12605 * 0.04806 * 19 18 17 21 21 N 1.31942 * 119.84489 * 179.67868 * 20 19 18 22 22 C 1.32246 * 120.11412 * 0.57460 * 21 20 19 23 23 C 1.38438 * 120.25706 * 359.44276 * 22 21 20 24 24 N 1.32006 * 120.15128 * 0.25742 * 23 22 21 25 25 N 1.30240 * 109.06087 * 0.23863 * 18 17 16 26 26 H 1.09009 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47523 * 300.00216 * 1 2 3 28 28 H 1.09010 * 109.47164 * 60.00444 * 1 2 3 29 29 H 1.09006 * 109.47427 * 239.99855 * 2 1 3 30 30 H 1.09004 * 109.46857 * 120.00199 * 2 1 3 31 31 H 0.97008 * 119.99891 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46903 * 59.99861 * 14 12 3 33 33 H 1.09002 * 109.46662 * 299.99978 * 14 12 3 34 34 H 1.08005 * 125.89837 * 0.03962 * 16 15 14 35 35 H 1.08000 * 120.08047 * 359.97122 * 20 19 18 36 36 H 1.07997 * 119.86990 * 179.72010 * 22 21 20 37 37 H 1.08000 * 119.92530 * 180.27490 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9830 -1.1797 5 1 2.8580 2.9477 -1.1694 6 6 2.1068 1.3519 -2.3888 7 7 1.1283 0.4789 -2.4732 8 14 3.1407 1.7445 -3.8943 9 1 4.3648 0.9038 -3.8871 10 1 2.3542 1.4630 -5.1220 11 1 3.5251 3.1787 -3.8705 12 6 2.1194 2.0601 1.1599 13 8 2.5233 3.2038 1.1598 14 6 1.7306 1.3984 2.4568 15 6 1.9351 2.3647 3.5949 16 6 0.9518 2.6773 4.4477 17 16 1.5865 3.8286 5.6216 18 6 3.1552 3.7711 4.8220 19 6 4.3556 4.5297 5.2324 20 6 4.3033 5.3791 6.3402 21 7 5.3799 6.0487 6.7055 22 6 6.5030 5.9254 6.0183 23 6 6.5597 5.0853 4.9194 24 7 5.4905 4.4059 4.5484 25 7 3.0860 2.9571 3.8076 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9431 0.0381 -3.3172 32 1 2.3497 0.5151 2.6139 33 1 0.6819 1.1041 2.4144 34 1 -0.0563 2.2905 4.4211 35 1 3.3852 5.4838 6.8993 36 1 7.3806 6.4789 6.3181 37 1 7.4810 4.9853 4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066352635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = 59.259826 kcal Electronic energy + Delta-G solvation = -23345.541519 eV Core-core repulsion = 19829.145020 eV Total energy + Delta-G solvation = -3516.396499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.09094 -41.08513 -39.83798 -36.91780 -35.49251 -34.13666 -33.68262 -32.00699 -31.12887 -29.34011 -27.24507 -26.56789 -25.62893 -24.06416 -23.61802 -21.30296 -20.36978 -19.01805 -18.71114 -18.22897 -18.02702 -17.89307 -17.40252 -16.57498 -16.13128 -16.10900 -15.70424 -15.58757 -15.11452 -14.63690 -14.49090 -14.33367 -14.01540 -13.87072 -13.71652 -13.44333 -12.94042 -12.79423 -12.67656 -12.58158 -12.45927 -12.37151 -12.11012 -11.99956 -11.60348 -11.04127 -10.79486 -10.64118 -10.28190 -10.25828 -10.20165 -9.65739 -9.40068 -8.31533 -5.79696 -1.01246 -0.06834 0.16060 0.25583 0.55882 1.35558 1.41142 1.51120 1.81154 2.10131 2.30562 2.63061 2.72155 3.06817 3.18936 3.20942 3.24709 3.42981 3.76075 4.07491 4.10605 4.16808 4.28709 4.35229 4.41263 4.41891 4.57814 4.71002 4.92159 4.94429 5.04254 5.20106 5.27108 5.45839 5.53265 5.96448 6.11944 6.15754 6.59263 6.63873 6.88272 7.25175 7.56537 8.15492 8.66810 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.003519 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.848231 B = 7954.466329 C = 9314.781711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 N -0.457 5.457 4 C -0.348 4.348 5 H 0.063 0.937 6 C 0.007 3.993 7 N -0.866 5.866 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.284 1.284 12 C 0.437 3.563 13 O -0.626 6.626 14 C -0.051 4.051 15 C 0.063 3.937 16 C -0.226 4.226 17 S 0.172 5.828 18 C 0.063 3.937 19 C 0.125 3.875 20 C 0.075 3.925 21 N -0.443 5.443 22 C 0.069 3.931 23 C 0.055 3.945 24 N -0.450 5.450 25 N -0.440 5.440 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.273 0.727 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.219 0.781 35 H 0.191 0.809 36 H 0.221 0.779 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 2.509 18.720 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.004 4.004 3 N -0.177 5.177 4 C -0.475 4.475 5 H 0.081 0.919 6 C -0.196 4.196 7 N -0.505 5.505 8 Si 0.799 3.201 9 H -0.197 1.197 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.226 3.774 13 O -0.513 6.513 14 C -0.093 4.093 15 C -0.071 4.071 16 C -0.365 4.365 17 S 0.426 5.574 18 C -0.212 4.212 19 C -0.016 4.016 20 C -0.086 4.086 21 N -0.157 5.157 22 C -0.092 4.092 23 C -0.108 4.108 24 N -0.167 5.167 25 N -0.154 5.154 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.145 0.855 34 H 0.235 0.765 35 H 0.208 0.792 36 H 0.238 0.762 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.211 3.343 19.107 19.523 hybrid contribution 0.352 -0.440 -2.100 2.174 sum 2.562 2.903 17.007 17.443 Atomic orbital electron populations 1.21977 0.95229 1.01368 1.01037 1.21546 0.95638 0.81995 1.01232 1.44005 1.56192 1.12447 1.05012 1.19456 1.38368 1.05378 0.84320 0.91946 1.25729 0.96416 0.97044 1.00391 1.70176 1.24439 1.28409 1.27441 0.85255 0.78917 0.78165 0.77771 1.19653 1.19413 1.20974 1.20596 0.84057 0.86734 0.85990 1.90507 1.52624 1.20661 1.87478 1.20257 1.04769 0.96495 0.87776 1.19836 0.88197 1.00472 0.98589 1.27415 1.05548 1.03974 0.99588 1.84014 1.03392 1.40578 1.29409 1.25498 0.97310 1.01786 0.96652 1.19776 0.90726 0.96504 0.94581 1.23820 0.99349 0.91906 0.93522 1.68578 0.99535 1.19080 1.28504 1.24635 0.97609 0.95536 0.91445 1.24536 0.97567 0.92394 0.96255 1.68516 0.99595 1.20657 1.27883 1.66159 1.27144 1.07503 1.14562 0.91382 0.94086 0.92498 0.90231 0.91796 0.91704 0.87541 0.85488 0.76457 0.79202 0.76230 0.77964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.64 71.98 0.69 -4.69 16 2 C 0.12 5.18 5.07 86.38 0.44 5.62 16 3 N -0.46 -24.24 2.64 -635.54 -1.68 -25.92 16 4 C -0.35 -20.53 9.43 84.04 0.79 -19.74 16 5 H 0.06 4.09 7.31 -2.91 -0.02 4.07 16 6 C 0.01 0.38 4.90 84.93 0.42 0.80 16 7 N -0.87 -44.35 8.65 21.66 0.19 -44.16 16 8 Si 0.97 43.47 29.62 68.60 2.03 45.50 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 C 0.44 22.69 7.53 87.66 0.66 23.35 16 13 O -0.63 -38.56 15.00 -3.06 -0.05 -38.60 16 14 C -0.05 -1.91 4.78 29.10 0.14 -1.78 16 15 C 0.06 2.31 5.62 41.66 0.23 2.54 16 16 C -0.23 -6.07 11.02 66.82 0.74 -5.34 16 17 S 0.17 4.01 22.40 -56.49 -1.27 2.75 16 18 C 0.06 2.16 7.43 87.47 0.65 2.81 16 19 C 0.12 3.87 6.75 41.84 0.28 4.16 16 20 C 0.08 1.74 10.79 85.03 0.92 2.66 16 21 N -0.44 -9.34 10.49 -194.17 -2.04 -11.37 16 22 C 0.07 1.14 11.22 84.68 0.95 2.09 16 23 C 0.05 1.19 11.22 84.71 0.95 2.14 16 24 N -0.45 -14.94 10.42 -184.48 -1.92 -16.86 16 25 N -0.44 -18.42 9.57 -177.84 -1.70 -20.12 16 26 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.04 1.42 6.45 -2.39 -0.02 1.40 16 28 H 0.06 2.65 6.38 -2.38 -0.02 2.63 16 29 H 0.08 3.81 5.83 -2.38 -0.01 3.80 16 30 H 0.06 2.34 6.71 -2.38 -0.02 2.32 16 31 H 0.27 13.06 8.31 -92.70 -0.77 12.29 16 32 H 0.11 3.67 7.42 -2.39 -0.02 3.65 16 33 H 0.13 3.89 6.28 -2.39 -0.01 3.87 16 34 H 0.22 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.19 3.25 7.30 -2.91 -0.02 3.23 16 36 H 0.22 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.20 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -83.08 329.81 2.56 -80.53 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.13 Total: 13.64 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 7.86 Total: 14.63 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.15 Total: -118.43 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.05 Total: -38.60 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.27 Total: 2.75 kcal Total: -83.08 2.56 -80.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066352635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.785 kcal (2) G-P(sol) polarization free energy of solvation -83.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds