Wall clock time and date at job start Tue Mar 31 2020 12:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37324 * 125.82973 * 2 1 4 4 C 1.50699 * 125.57853 * 359.97195 * 3 2 1 5 5 N 1.46500 * 109.46917 * 90.00805 * 4 3 2 6 6 C 1.34776 * 120.00203 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99792 * 359.97438 * 6 5 4 8 8 C 1.47878 * 120.00264 * 179.97438 * 6 5 4 9 9 C 1.39919 * 120.02581 * 359.73109 * 8 6 5 10 10 C 1.38329 * 120.35935 * 179.78488 * 9 8 6 11 11 C 1.37756 * 120.40949 * 0.46434 * 10 9 8 12 12 C 1.40748 * 120.04464 * 359.78772 * 11 10 9 13 13 C 1.41428 * 120.18128 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00070 * 334.92792 * 13 12 11 15 15 C 1.39939 * 120.00270 * 154.93049 * 13 12 11 16 16 N 1.30831 * 119.99369 * 342.58852 * 15 13 12 17 17 Si 1.86793 * 120.00394 * 162.59062 * 15 13 12 18 18 H 1.48500 * 109.47159 * 59.99845 * 17 15 13 19 19 H 1.48500 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46932 * 299.99842 * 17 15 13 21 21 C 1.38996 * 120.02840 * 179.97438 * 8 6 5 22 22 N 1.29417 * 108.83393 * 180.23789 * 3 2 1 23 23 N 1.40170 * 108.13342 * 359.59251 * 22 3 2 24 24 H 0.96999 * 126.34888 * 180.17172 * 23 22 3 25 25 C 1.34817 * 125.82989 * 179.97438 * 2 1 3 26 26 S 1.71196 * 126.30261 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46523 * 90.00554 * 1 2 3 28 28 H 1.09008 * 109.46991 * 210.00359 * 1 2 3 29 29 H 1.08995 * 109.47309 * 330.00656 * 1 2 3 30 30 H 1.08999 * 109.47047 * 210.00014 * 4 3 2 31 31 H 1.08996 * 109.47235 * 330.00525 * 4 3 2 32 32 H 0.96998 * 120.00079 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.82281 * 359.97438 * 9 8 6 34 34 H 1.08004 * 119.79712 * 180.22987 * 10 9 8 35 35 H 1.08007 * 119.97738 * 179.76684 * 11 10 9 36 36 H 0.97008 * 119.99587 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.20139 * 359.96257 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.1134 0.0000 4 6 1.7884 2.5417 -0.0006 5 7 1.6323 3.0050 1.3804 6 6 1.2103 4.2611 1.6263 7 8 0.9596 5.0098 0.7021 8 6 1.0523 4.7286 3.0203 9 6 1.3353 3.8654 4.0845 10 6 1.1941 4.2969 5.3912 11 6 0.7642 5.5777 5.6600 12 6 0.4697 6.4587 4.6026 13 6 0.0286 7.7745 4.8752 14 1 -0.4641 7.9960 5.8104 15 6 0.2306 8.7895 3.9333 16 7 1.1044 8.6264 2.9733 17 14 -0.7471 10.3770 4.0466 18 1 -0.4720 11.0360 5.3486 19 1 -0.3493 11.2836 2.9397 20 1 -2.1970 10.0739 3.9418 21 6 0.6176 6.0241 3.2745 22 7 3.5065 0.7351 -0.0051 23 7 3.5344 -0.6663 0.0009 24 1 4.3269 -1.2256 0.0014 25 6 2.2542 -1.0930 0.0005 26 16 1.7289 -2.7224 0.0006 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 2.5163 3.1697 -0.5143 31 1 0.8292 2.6022 -0.5147 32 1 1.8328 2.4077 2.1179 33 1 1.6688 2.8578 3.8848 34 1 1.4186 3.6242 6.2058 35 1 0.6528 5.9061 6.6829 36 1 1.2447 9.3302 2.3205 37 1 0.3947 6.6928 2.4561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066625386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:05 Heat of formation + Delta-G solvation = 53.023517 kcal Electronic energy + Delta-G solvation = -23048.305988 eV Core-core repulsion = 19531.639063 eV Total energy + Delta-G solvation = -3516.666926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.10815 -40.96134 -38.87355 -36.80521 -36.10549 -35.56713 -33.65282 -32.03091 -31.27843 -28.98760 -28.74979 -27.11889 -25.13853 -24.21277 -22.85309 -22.33318 -21.36414 -20.51212 -19.56585 -18.23192 -18.16696 -17.97444 -17.11548 -16.98507 -16.80215 -16.46533 -16.20181 -15.59383 -15.09333 -14.84066 -14.62098 -14.42645 -14.33291 -14.26317 -13.79926 -13.44690 -13.12941 -12.94625 -12.79390 -12.68168 -12.53530 -12.31082 -12.19813 -11.91158 -11.82747 -11.51263 -11.05668 -10.88874 -10.39837 -9.48527 -9.38138 -9.14075 -9.07750 -8.65744 -6.37072 -0.22820 0.07121 0.12568 0.35493 1.02019 1.15798 1.20111 1.39138 1.49006 1.52111 2.05423 2.16388 2.20873 2.73545 2.79283 3.07817 3.41863 3.69989 3.92918 4.13372 4.27863 4.32791 4.42538 4.44330 4.56872 4.68626 4.89992 4.93665 5.09002 5.11647 5.18653 5.32635 5.35384 5.52209 5.82454 5.83705 5.92081 6.05508 6.27356 6.37124 6.61631 6.89461 6.94322 7.16002 8.30828 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.002639 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.807267 B =10606.696144 C =11046.380667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.473 5.473 3 C 0.275 3.725 4 C 0.202 3.798 5 N -0.715 5.715 6 C 0.578 3.422 7 O -0.570 6.570 8 C -0.137 4.137 9 C -0.196 4.196 10 C -0.098 4.098 11 C -0.217 4.217 12 C 0.067 3.933 13 C -0.498 4.498 14 H 0.081 0.919 15 C 0.033 3.967 16 N -0.822 5.822 17 Si 0.979 3.021 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.260 1.260 21 C -0.125 4.125 22 N -0.257 5.257 23 N -0.453 5.453 24 H 0.480 0.520 25 C 0.479 3.521 26 S -0.646 6.646 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.288 0.712 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -11.710 -5.838 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.172 5.172 3 C -0.006 4.006 4 C 0.076 3.924 5 N -0.371 5.371 6 C 0.368 3.632 7 O -0.449 6.449 8 C -0.140 4.140 9 C -0.216 4.216 10 C -0.116 4.116 11 C -0.237 4.237 12 C 0.065 3.935 13 C -0.527 4.527 14 H 0.100 0.900 15 C -0.182 4.182 16 N -0.448 5.448 17 Si 0.800 3.200 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.184 1.184 21 C -0.145 4.145 22 N -0.080 5.080 23 N -0.178 5.178 24 H 0.334 0.666 25 C 0.114 3.886 26 S -0.521 6.521 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.251 0.749 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.883 -11.649 -6.731 13.585 hybrid contribution -0.049 0.783 0.338 0.854 sum 1.834 -10.866 -6.392 12.740 Atomic orbital electron populations 1.22707 0.70111 1.07456 1.07044 1.46323 1.11263 1.02806 1.56804 1.24709 0.85732 0.92524 0.97614 1.19882 1.04809 0.82237 0.85451 1.45577 1.69842 1.13771 1.07909 1.18439 0.75106 0.80759 0.88917 1.90730 1.51801 1.55683 1.46701 1.19652 1.06739 0.95694 0.91914 1.20786 1.09999 0.99023 0.91799 1.20898 0.98709 0.95285 0.96663 1.21402 1.08547 0.96024 0.97749 1.17931 0.90181 0.93762 0.91626 1.19829 1.35527 0.93481 1.03860 0.90043 1.26773 0.94080 1.03996 0.93400 1.69859 1.26412 1.35623 1.12900 0.85282 0.79267 0.76247 0.79178 1.18054 1.19605 1.18445 1.21455 1.01935 0.93909 0.97218 1.77420 1.17451 0.90918 1.22205 1.47162 1.07498 1.03807 1.59312 0.66595 1.23456 0.84433 0.93311 0.87445 1.93785 1.84561 0.96663 1.77055 0.87004 0.87325 0.86355 0.86585 0.85666 0.74927 0.84988 0.84891 0.87727 0.90177 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.52 127.77 1.34 2.00 16 2 N -0.47 -7.00 3.14 -539.80 -1.69 -8.70 16 3 C 0.27 4.13 7.35 137.70 1.01 5.14 16 4 C 0.20 3.29 5.76 85.63 0.49 3.78 16 5 N -0.71 -16.11 5.50 -469.68 -2.58 -18.69 16 6 C 0.58 20.35 7.77 86.80 0.67 21.03 16 7 O -0.57 -24.08 16.33 -3.88 -0.06 -24.14 16 8 C -0.14 -5.64 5.87 -20.14 -0.12 -5.76 16 9 C -0.20 -6.83 9.55 22.70 0.22 -6.61 16 10 C -0.10 -3.58 10.01 22.18 0.22 -3.36 16 11 C -0.22 -9.58 9.78 22.77 0.22 -9.36 16 12 C 0.07 3.43 5.57 -21.32 -0.12 3.31 16 13 C -0.50 -25.79 9.05 23.47 0.21 -25.58 16 14 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 15 C 0.03 1.63 5.14 85.25 0.44 2.07 16 16 N -0.82 -43.19 10.96 21.83 0.24 -42.95 16 17 Si 0.98 37.61 29.59 68.60 2.03 39.64 16 18 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 C -0.12 -6.31 8.23 23.01 0.19 -6.12 16 22 N -0.26 -4.31 12.64 -49.61 -0.63 -4.93 16 23 N -0.45 -7.11 7.40 -58.99 -0.44 -7.55 16 24 H 0.48 5.32 8.96 -213.28 -1.91 3.40 16 25 C 0.48 9.25 8.14 178.99 1.46 10.71 16 26 S -0.65 -17.52 30.37 -56.49 -1.72 -19.24 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 1.28 7.64 -2.38 -0.02 1.26 16 29 H 0.12 0.84 7.65 -2.39 -0.02 0.82 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.13 1.61 7.71 -2.39 -0.02 1.59 16 32 H 0.41 7.91 6.48 -92.71 -0.60 7.31 16 33 H 0.13 3.37 6.38 -2.91 -0.02 3.35 16 34 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 37 H 0.10 5.85 5.76 -2.91 -0.02 5.84 16 Total: -1.00 -70.93 339.20 0.04 -70.89 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -1.36 Total: 24.44 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 6.25 Total: -8.76 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -5.10 Total: -82.83 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: -17.52 SS G_CDS: -1.72 Total: -19.24 kcal Total: -70.93 0.04 -70.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066625386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.913 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds