Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.53001 * 109.46403 * 120.00169 * 2 1 3 5 5 C 1.50705 * 109.46504 * 182.94539 * 4 2 1 6 6 C 1.33389 * 125.20417 * 84.89098 * 5 4 2 7 7 C 1.38429 * 114.91758 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.92342 * 0.24366 * 7 6 5 9 9 S 1.75885 * 109.59304 * 359.63600 * 8 7 6 10 10 N 1.46496 * 109.46967 * 239.99868 * 2 1 3 11 11 S 1.65603 * 119.99986 * 95.14516 * 10 2 1 12 12 O 1.42098 * 106.40241 * 46.87945 * 11 10 2 13 13 O 1.42095 * 106.40196 * 179.79619 * 11 10 2 14 14 N 1.65592 * 107.21783 * 293.34050 * 11 10 2 15 15 C 1.46503 * 120.00460 * 87.41108 * 14 11 10 16 16 C 1.46506 * 120.00018 * 267.40971 * 14 11 10 17 17 C 1.50704 * 109.47146 * 95.79010 * 16 14 11 18 18 H 1.07998 * 119.99848 * 4.05782 * 17 16 14 19 19 C 1.37875 * 119.99700 * 184.05862 * 17 16 14 20 20 N 1.31515 * 120.00237 * 5.13572 * 19 17 16 21 21 Si 1.86805 * 119.99632 * 185.14353 * 19 17 16 22 22 H 1.48497 * 109.46966 * 5.00035 * 21 19 17 23 23 H 1.48495 * 109.47040 * 125.00312 * 21 19 17 24 24 H 1.48503 * 109.46936 * 245.00190 * 21 19 17 25 25 H 1.08992 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47275 * 300.00092 * 1 2 3 27 27 H 1.09001 * 109.46926 * 59.99908 * 1 2 3 28 28 H 1.08997 * 109.47439 * 62.94875 * 4 2 1 29 29 H 1.08996 * 109.47142 * 302.93813 * 4 2 1 30 30 H 1.07995 * 122.54010 * 359.93218 * 6 5 4 31 31 H 1.07995 * 122.53492 * 179.97438 * 7 6 5 32 32 H 1.08001 * 125.20266 * 179.75269 * 8 7 6 33 33 H 0.97006 * 120.00021 * 275.14050 * 10 2 1 34 34 H 1.08994 * 109.46797 * 89.99666 * 15 14 11 35 35 H 1.08994 * 109.47210 * 210.00112 * 15 14 11 36 36 H 1.08999 * 109.46645 * 329.99737 * 15 14 11 37 37 H 1.09000 * 109.47430 * 215.79392 * 16 14 11 38 38 H 1.09001 * 109.46748 * 335.79217 * 16 14 11 39 39 H 0.97007 * 119.99666 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5451 -0.6584 1.2864 6 6 4.2606 0.3532 1.7803 7 6 5.6330 0.1877 1.7066 8 6 6.0320 -0.9561 1.1482 9 16 4.6273 -1.9082 0.6857 10 7 2.0183 -0.6906 -1.1961 11 16 2.4156 0.1775 -2.5493 12 8 3.2166 1.2649 -2.1076 13 8 2.8522 -0.7663 -3.5176 14 7 1.0150 0.8369 -3.1373 15 6 0.5508 2.1343 -2.6396 16 6 0.2401 0.1230 -4.1552 17 6 -0.8559 -0.6682 -3.4889 18 1 -1.0058 -0.5907 -2.4221 19 6 -1.6672 -1.4909 -4.2411 20 7 -1.4221 -1.6637 -5.5216 21 14 -3.1147 -2.3599 -3.4415 22 1 -3.2462 -1.9086 -2.0329 23 1 -4.3589 -2.0344 -4.1838 24 1 -2.8894 -3.8274 -3.4722 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.7203 -1.7631 1.2232 29 1 1.6341 -0.2388 2.1384 30 1 3.8038 1.2349 2.2048 31 1 6.3279 0.9304 2.0695 32 1 7.0603 -1.2531 1.0040 33 1 2.1090 -1.6564 -1.1955 34 1 0.9694 2.9304 -3.2553 35 1 -0.5375 2.1730 -2.6861 36 1 0.8752 2.2646 -1.6072 37 1 -0.1995 0.8412 -4.8473 38 1 0.8959 -0.5542 -4.7023 39 1 -1.9928 -2.2429 -6.0508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073637000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = -50.257361 kcal Electronic energy + Delta-G solvation = -23597.291810 eV Core-core repulsion = 20179.297490 eV Total energy + Delta-G solvation = -3417.994320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.26356 -36.71528 -36.25605 -35.43505 -35.14150 -32.47342 -31.34546 -29.35686 -27.77191 -26.34443 -25.06784 -23.20945 -22.25235 -21.31201 -19.29850 -18.83247 -17.44216 -16.99200 -16.70679 -16.31403 -15.85028 -15.38429 -15.03718 -14.39111 -13.85717 -13.79812 -13.48412 -13.32239 -12.98600 -12.68086 -12.55790 -12.34743 -12.28380 -12.16738 -11.65418 -11.60518 -11.59827 -11.40442 -11.15932 -11.11656 -11.09773 -10.87430 -10.70733 -10.66636 -10.49271 -10.08449 -9.70113 -9.22661 -8.56616 -8.48367 -8.41722 -8.01280 -6.10118 -4.15876 1.03604 1.36662 1.68351 2.04770 2.78657 3.23671 3.31739 3.33400 3.56161 4.23016 4.36616 4.69495 4.89106 5.03041 5.07786 5.10092 5.24188 5.39696 5.47203 5.53199 5.62267 5.63977 5.75476 5.78801 6.02408 6.09077 6.11944 6.23510 6.31253 6.37412 6.53479 6.56742 6.63324 7.23437 7.40860 7.50770 7.68946 7.88085 8.17001 8.89497 9.49718 10.98033 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.004706 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.387257 B = 5948.827729 C = 6348.147995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.158 3.842 3 H 0.089 0.911 4 C -0.053 4.053 5 C -0.161 4.161 6 C -0.143 4.143 7 C -0.130 4.130 8 C -0.222 4.222 9 S 0.095 5.905 10 N -1.118 6.118 11 S 2.787 3.213 12 O -0.999 6.999 13 O -0.978 6.978 14 N -0.997 5.997 15 C 0.104 3.896 16 C 0.243 3.757 17 C -0.540 4.540 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 3.401 15.481 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.107 0.893 4 C -0.094 4.094 5 C -0.278 4.278 6 C -0.173 4.173 7 C -0.161 4.161 8 C -0.358 4.358 9 S 0.358 5.642 10 N -0.877 5.877 11 S 2.795 3.205 12 O -0.982 6.982 13 O -0.963 6.963 14 N -0.839 5.839 15 C -0.043 4.043 16 C 0.121 3.879 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.178 0.822 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.336 2.218 14.247 16.655 hybrid contribution -0.998 0.335 1.073 1.504 sum 7.338 2.553 15.321 17.178 Atomic orbital electron populations 1.22491 0.94416 1.03674 1.03117 1.20717 0.94144 0.96138 0.84046 0.89334 1.20518 0.87759 1.02446 0.98699 1.24434 0.99433 0.98473 1.05501 1.20070 0.93332 0.99738 1.04112 1.20131 0.95797 0.97906 1.02248 1.25569 1.02112 0.99910 1.08188 1.84352 0.96865 1.21781 1.61176 1.56056 1.83585 1.19641 1.28378 1.01682 0.73413 0.72986 0.72458 1.93542 1.67017 1.54966 1.82692 1.93589 1.80778 1.63030 1.58855 1.57634 1.43898 1.28617 1.53754 1.21268 1.01281 0.84512 0.97247 1.19232 0.91200 0.91700 0.85728 1.21679 1.15338 1.25762 0.95140 0.91282 1.24973 0.97858 0.96295 0.94861 1.69962 1.38391 1.37910 1.06436 0.86538 0.82451 0.79507 0.79427 1.19699 1.21053 1.20987 0.91608 0.92191 0.89943 0.90021 0.88798 0.84400 0.84552 0.82172 0.75519 0.93763 0.90772 0.93013 0.94897 0.92735 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.15 37.16 0.34 -1.98 16 2 C 0.16 2.09 2.79 -67.93 -0.19 1.90 16 3 H 0.09 1.18 6.98 -51.93 -0.36 0.82 16 4 C -0.05 -0.58 5.33 -27.88 -0.15 -0.73 16 5 C -0.16 -1.99 5.44 -36.00 -0.20 -2.18 16 6 C -0.14 -1.69 10.05 -41.21 -0.41 -2.11 16 7 C -0.13 -1.49 10.18 -41.21 -0.42 -1.91 16 8 C -0.22 -2.59 11.23 29.04 0.33 -2.26 16 9 S 0.09 1.20 23.33 -107.50 -2.51 -1.31 16 10 N -1.12 -18.16 5.19 -4.89 -0.03 -18.18 16 11 S 2.79 56.12 6.10 -107.50 -0.66 55.46 16 12 O -1.00 -20.76 16.57 -57.18 -0.95 -21.70 16 13 O -0.98 -23.44 16.64 -57.18 -0.95 -24.39 16 14 N -1.00 -20.32 3.00 -123.05 -0.37 -20.69 16 15 C 0.10 1.73 8.97 59.85 0.54 2.26 16 16 C 0.24 6.01 5.42 -5.19 -0.03 5.98 16 17 C -0.54 -13.77 9.37 -34.44 -0.32 -14.09 16 18 H 0.07 1.65 6.03 -52.49 -0.32 1.33 16 19 C 0.06 1.69 5.45 -17.82 -0.10 1.59 16 20 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 21 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.25 4.90 -51.93 -0.25 1.00 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.41 6.33 8.84 -34.47 -0.30 6.03 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.05 0.74 7.02 -51.93 -0.36 0.37 16 37 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.05 1.51 6.87 -51.93 -0.36 1.16 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -32.54 348.37 -10.42 -42.97 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.32 Total: 5.43 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.61 Total: -13.54 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.34 Total: -63.53 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.90 Total: -46.09 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -3.16 Total: 54.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.54 -10.42 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073637000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.291 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds