Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.53001 * 109.46403 * 120.00169 * 2 1 3 5 5 C 1.50705 * 109.46504 * 182.94539 * 4 2 1 6 6 C 1.33389 * 125.20417 * 84.89098 * 5 4 2 7 7 C 1.38429 * 114.91758 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.92342 * 0.24366 * 7 6 5 9 9 S 1.75885 * 109.59304 * 359.63600 * 8 7 6 10 10 N 1.46496 * 109.46967 * 239.99868 * 2 1 3 11 11 S 1.65603 * 119.99986 * 95.14516 * 10 2 1 12 12 O 1.42098 * 106.40241 * 46.87945 * 11 10 2 13 13 O 1.42095 * 106.40196 * 179.79619 * 11 10 2 14 14 N 1.65592 * 107.21783 * 293.34050 * 11 10 2 15 15 C 1.46503 * 120.00460 * 87.41108 * 14 11 10 16 16 C 1.46506 * 120.00018 * 267.40971 * 14 11 10 17 17 C 1.50704 * 109.47146 * 95.79010 * 16 14 11 18 18 H 1.07998 * 119.99848 * 4.05782 * 17 16 14 19 19 C 1.37875 * 119.99700 * 184.05862 * 17 16 14 20 20 N 1.31515 * 120.00237 * 5.13572 * 19 17 16 21 21 Si 1.86805 * 119.99632 * 185.14353 * 19 17 16 22 22 H 1.48497 * 109.46966 * 5.00035 * 21 19 17 23 23 H 1.48495 * 109.47040 * 125.00312 * 21 19 17 24 24 H 1.48503 * 109.46936 * 245.00190 * 21 19 17 25 25 H 1.08992 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47275 * 300.00092 * 1 2 3 27 27 H 1.09001 * 109.46926 * 59.99908 * 1 2 3 28 28 H 1.08997 * 109.47439 * 62.94875 * 4 2 1 29 29 H 1.08996 * 109.47142 * 302.93813 * 4 2 1 30 30 H 1.07995 * 122.54010 * 359.93218 * 6 5 4 31 31 H 1.07995 * 122.53492 * 179.97438 * 7 6 5 32 32 H 1.08001 * 125.20266 * 179.75269 * 8 7 6 33 33 H 0.97006 * 120.00021 * 275.14050 * 10 2 1 34 34 H 1.08994 * 109.46797 * 89.99666 * 15 14 11 35 35 H 1.08994 * 109.47210 * 210.00112 * 15 14 11 36 36 H 1.08999 * 109.46645 * 329.99737 * 15 14 11 37 37 H 1.09000 * 109.47430 * 215.79392 * 16 14 11 38 38 H 1.09001 * 109.46748 * 335.79217 * 16 14 11 39 39 H 0.97007 * 119.99666 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5451 -0.6584 1.2864 6 6 4.2606 0.3532 1.7803 7 6 5.6330 0.1877 1.7066 8 6 6.0320 -0.9561 1.1482 9 16 4.6273 -1.9082 0.6857 10 7 2.0183 -0.6906 -1.1961 11 16 2.4156 0.1775 -2.5493 12 8 3.2166 1.2649 -2.1076 13 8 2.8522 -0.7663 -3.5176 14 7 1.0150 0.8369 -3.1373 15 6 0.5508 2.1343 -2.6396 16 6 0.2401 0.1230 -4.1552 17 6 -0.8559 -0.6682 -3.4889 18 1 -1.0058 -0.5907 -2.4221 19 6 -1.6672 -1.4909 -4.2411 20 7 -1.4221 -1.6637 -5.5216 21 14 -3.1147 -2.3599 -3.4415 22 1 -3.2462 -1.9086 -2.0329 23 1 -4.3589 -2.0344 -4.1838 24 1 -2.8894 -3.8274 -3.4722 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.7203 -1.7631 1.2232 29 1 1.6341 -0.2388 2.1384 30 1 3.8038 1.2349 2.2048 31 1 6.3279 0.9304 2.0695 32 1 7.0603 -1.2531 1.0040 33 1 2.1090 -1.6564 -1.1955 34 1 0.9694 2.9304 -3.2553 35 1 -0.5375 2.1730 -2.6861 36 1 0.8752 2.2646 -1.6072 37 1 -0.1995 0.8412 -4.8473 38 1 0.8959 -0.5542 -4.7023 39 1 -1.9928 -2.2429 -6.0508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073637000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = -72.855290 kcal Electronic energy + Delta-G solvation = -23598.271730 eV Core-core repulsion = 20179.297490 eV Total energy + Delta-G solvation = -3418.974240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.20488 -38.27593 -37.51718 -37.05280 -36.85798 -34.43871 -32.39595 -30.42944 -29.60743 -27.26090 -26.70012 -24.20790 -24.04262 -22.35567 -20.54835 -19.96194 -18.93102 -18.51708 -18.21385 -17.90346 -17.23824 -16.69648 -16.28342 -16.01062 -15.15548 -15.01261 -14.90052 -14.70759 -14.08670 -14.03017 -13.78571 -13.63874 -13.47336 -13.36837 -13.29713 -13.15826 -12.95977 -12.89070 -12.78546 -12.58733 -12.40825 -12.28481 -12.23685 -11.96637 -11.76631 -11.59877 -11.50701 -10.57854 -10.45570 -9.73321 -9.45734 -9.36338 -8.12808 -6.25461 -0.23276 0.15067 0.79051 1.15980 1.45057 1.46567 1.57821 1.91596 2.05743 2.46100 2.66992 3.19375 3.48119 3.77975 3.94619 4.09764 4.16363 4.28088 4.45612 4.53148 4.63570 4.72256 4.77601 4.82600 4.86016 4.96980 5.06065 5.08688 5.22307 5.29831 5.34835 5.43303 5.53213 5.57788 5.68805 5.81214 5.91440 6.15360 6.20609 6.88858 7.44573 8.95992 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.004706 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.387257 B = 5948.827729 C = 6348.147995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.153 3.847 3 H 0.091 0.909 4 C -0.047 4.047 5 C -0.171 4.171 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.229 4.229 9 S 0.051 5.949 10 N -1.111 6.111 11 S 2.800 3.200 12 O -1.005 7.005 13 O -1.024 7.024 14 N -1.000 6.000 15 C 0.095 3.905 16 C 0.257 3.743 17 C -0.538 4.538 18 H 0.088 0.912 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.251 1.251 23 H -0.285 1.285 24 H -0.287 1.287 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.416 0.584 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.018 0.982 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 4.271 18.497 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.046 3.954 3 H 0.109 0.891 4 C -0.088 4.088 5 C -0.288 4.288 6 C -0.179 4.179 7 C -0.169 4.169 8 C -0.364 4.364 9 S 0.314 5.686 10 N -0.873 5.873 11 S 2.807 3.193 12 O -0.988 6.988 13 O -1.008 7.008 14 N -0.842 5.842 15 C -0.050 4.050 16 C 0.133 3.867 17 C -0.577 4.577 18 H 0.106 0.894 19 C -0.193 4.193 20 N -0.574 5.574 21 Si 0.786 3.214 22 H -0.175 1.175 23 H -0.211 1.211 24 H -0.213 1.213 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.196 0.804 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.544 3.122 17.293 19.123 hybrid contribution -0.655 0.143 0.196 0.699 sum 6.889 3.265 17.489 19.078 Atomic orbital electron populations 1.22464 0.93862 1.03438 1.03740 1.20998 0.94540 0.96284 0.83591 0.89079 1.20552 0.86853 1.02893 0.98500 1.24654 1.00066 0.98264 1.05830 1.20440 0.93614 1.00218 1.03624 1.20505 0.96352 0.98228 1.01833 1.25872 1.02525 0.99843 1.08128 1.84495 0.98604 1.23338 1.62184 1.55792 1.83535 1.19735 1.28190 1.01087 0.73178 0.72489 0.72497 1.93524 1.67214 1.55337 1.82766 1.93524 1.81770 1.64336 1.61213 1.57484 1.43371 1.29903 1.53427 1.21528 1.01820 0.82806 0.98861 1.18787 0.90604 0.90988 0.86322 1.22043 1.14735 1.24909 0.95984 0.89428 1.25881 1.00754 0.97392 0.95295 1.70113 1.39825 1.39221 1.08200 0.85465 0.78667 0.77841 0.79411 1.17476 1.21113 1.21343 0.92256 0.88713 0.92123 0.89509 0.85496 0.82277 0.82300 0.80423 0.75017 0.92939 0.90228 0.90247 0.96407 0.96646 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 9.15 71.98 0.66 -3.34 16 2 C 0.15 3.62 2.79 44.99 0.13 3.74 16 3 H 0.09 2.13 6.98 -2.39 -0.02 2.12 16 4 C -0.05 -0.88 5.33 29.85 0.16 -0.72 16 5 C -0.17 -3.84 5.44 24.59 0.13 -3.70 16 6 C -0.15 -3.13 10.05 21.22 0.21 -2.91 16 7 C -0.14 -2.87 10.18 21.22 0.22 -2.66 16 8 C -0.23 -5.01 11.23 66.72 0.75 -4.26 16 9 S 0.05 1.25 23.33 -56.49 -1.32 -0.07 16 10 N -1.11 -34.87 5.19 -169.39 -0.88 -35.75 16 11 S 2.80 112.52 6.10 -56.49 -0.34 112.18 16 12 O -1.01 -40.81 16.57 -128.00 -2.12 -42.93 16 13 O -1.02 -50.68 16.64 -128.00 -2.13 -52.81 16 14 N -1.00 -40.61 3.00 -543.21 -1.63 -42.24 16 15 C 0.10 3.02 8.97 127.77 1.15 4.17 16 16 C 0.26 12.97 5.42 85.63 0.46 13.43 16 17 C -0.54 -27.32 9.37 25.60 0.24 -27.08 16 18 H 0.09 4.04 6.03 -2.91 -0.02 4.02 16 19 C 0.01 0.30 5.45 84.65 0.46 0.76 16 20 N -0.93 -54.55 13.29 21.45 0.29 -54.26 16 21 Si 0.96 41.38 29.54 68.60 2.03 43.40 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.66 4.90 -2.39 -0.01 1.65 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.42 12.60 8.84 -96.74 -0.85 11.74 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 36 H 0.08 2.06 7.02 -2.39 -0.02 2.05 16 37 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 38 H 0.02 0.90 6.87 -2.39 -0.02 0.88 16 39 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -71.08 348.37 -1.33 -72.41 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.21 Total: 22.63 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 4.57 Total: -22.57 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -2.22 Total: -132.25 kcal Atomic # 8 Polarization: -91.49 SS G_CDS: -4.25 Total: -95.74 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 113.77 SS G_CDS: -1.66 Total: 112.11 kcal Total: -71.08 -1.33 -72.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073637000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.442 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds