Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46691 * 2 1 4 4 C 1.46498 * 120.00239 * 274.72301 * 3 2 1 5 5 C 1.50703 * 109.46964 * 84.99935 * 4 3 2 6 6 C 1.33394 * 125.19646 * 90.00026 * 5 4 3 7 7 C 1.38425 * 114.91472 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.92436 * 0.02562 * 7 6 5 9 9 S 1.75874 * 125.20590 * 269.69779 * 5 4 3 10 10 S 1.65597 * 119.99791 * 95.00526 * 3 2 1 11 11 O 1.42101 * 106.40154 * 203.53789 * 10 3 2 12 12 O 1.42106 * 106.40098 * 336.45446 * 10 3 2 13 13 N 1.65596 * 107.22389 * 89.99756 * 10 3 2 14 14 C 1.46498 * 120.00027 * 270.00475 * 13 10 3 15 15 C 1.46502 * 120.00149 * 89.99526 * 13 10 3 16 16 C 1.50702 * 109.46993 * 95.00515 * 15 13 10 17 17 H 1.08002 * 119.99502 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99773 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00239 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47140 * 89.99727 * 20 18 16 22 22 H 1.48501 * 109.47144 * 209.99756 * 20 18 16 23 23 H 1.48504 * 109.47067 * 329.99797 * 20 18 16 24 24 H 1.08995 * 109.47574 * 60.00208 * 1 2 3 25 25 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47659 * 299.99430 * 1 2 3 27 27 H 1.08999 * 109.46983 * 240.00261 * 2 1 3 28 28 H 1.08998 * 109.47326 * 120.00250 * 2 1 3 29 29 H 1.08990 * 109.47572 * 205.00129 * 4 3 2 30 30 H 1.09003 * 109.47280 * 325.00485 * 4 3 2 31 31 H 1.07992 * 122.54178 * 359.96182 * 6 5 4 32 32 H 1.08001 * 122.53718 * 180.02562 * 7 6 5 33 33 H 1.08003 * 125.20440 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47839 * 89.99157 * 14 13 10 35 35 H 1.09002 * 109.47537 * 209.99546 * 14 13 10 36 36 H 1.09005 * 109.47090 * 329.99442 * 14 13 10 37 37 H 1.09000 * 109.46966 * 215.00458 * 15 13 10 38 38 H 1.09003 * 109.47007 * 335.00155 * 15 13 10 39 39 H 0.96994 * 119.99621 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1639 2.1068 -1.2644 5 6 0.8432 2.7262 -1.6431 6 6 0.4358 3.9456 -1.2873 7 6 -0.8179 4.3009 -1.7544 8 6 -1.4287 3.3700 -2.4891 9 16 -0.3932 1.9550 -2.6278 10 16 2.4121 2.1202 1.4287 11 8 2.3055 3.5186 1.1999 12 8 1.6868 1.4414 2.4448 13 7 4.0143 1.8138 1.7137 14 6 4.4090 0.6239 2.4717 15 6 5.0371 2.7326 1.2079 16 6 5.4043 3.7188 2.2866 17 1 4.9235 3.6666 3.2523 18 6 6.3532 4.6882 2.0404 19 7 6.9383 4.7521 0.8643 20 14 6.8078 5.9111 3.3774 21 1 7.9308 5.3685 4.1834 22 1 7.2203 7.1946 2.7548 23 1 5.6337 6.1422 4.2568 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.9130 2.8901 -1.1497 30 1 2.4781 1.4151 -2.0461 31 1 1.0382 4.6054 -0.6807 32 1 -1.2675 5.2592 -1.5403 33 1 -2.4072 3.4716 -2.9348 34 1 4.5591 -0.2103 1.7863 35 1 5.3366 0.8254 3.0074 36 1 3.6248 0.3711 3.1854 37 1 5.9219 2.1666 0.9166 38 1 4.6477 3.2689 0.3425 39 1 7.6056 5.4344 0.6911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075656490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -35.218621 kcal Electronic energy + Delta-G solvation = -23648.012917 eV Core-core repulsion = 20230.670725 eV Total energy + Delta-G solvation = -3417.342192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.10350 -36.71134 -36.27409 -35.49191 -35.11365 -32.44532 -31.47132 -29.20124 -27.78816 -25.77228 -25.06253 -23.01713 -22.47764 -22.21586 -19.15975 -18.56274 -17.52445 -17.09750 -16.52374 -16.29990 -15.93812 -15.30928 -14.91225 -14.32377 -14.04392 -13.72706 -13.40409 -13.29187 -13.03414 -12.93344 -12.63732 -12.34757 -12.18844 -12.16810 -11.92778 -11.75476 -11.62911 -11.39541 -11.15863 -11.08026 -10.95757 -10.82399 -10.68755 -10.63966 -10.49823 -10.03750 -9.77244 -9.08575 -8.62982 -8.45657 -8.24222 -8.05794 -6.08095 -4.11972 0.92887 1.27526 1.68877 2.03688 2.86334 3.30721 3.37234 3.43053 3.51706 4.09702 4.43784 4.80568 4.87814 4.96064 5.11672 5.26588 5.27124 5.35647 5.46070 5.53076 5.67010 5.73380 5.77006 5.78775 5.87886 5.99365 6.19420 6.28124 6.32353 6.36753 6.46627 6.52162 6.64950 6.75012 7.19667 7.38346 7.58741 7.89631 8.18681 8.90450 9.53486 11.00434 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.004782 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.277998 B = 5853.475553 C = 6726.482953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.123 3.877 3 N -1.006 6.006 4 C 0.196 3.804 5 C -0.191 4.191 6 C -0.119 4.119 7 C -0.131 4.131 8 C -0.220 4.220 9 S 0.087 5.913 10 S 2.778 3.222 11 O -0.958 6.958 12 O -0.993 6.993 13 N -0.997 5.997 14 C 0.095 3.905 15 C 0.257 3.743 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -8.949 -7.722 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.002 4.002 3 N -0.842 5.842 4 C 0.069 3.931 5 C -0.310 4.310 6 C -0.150 4.150 7 C -0.162 4.162 8 C -0.356 4.356 9 S 0.350 5.650 10 S 2.787 3.213 11 O -0.941 6.941 12 O -0.978 6.978 13 N -0.840 5.840 14 C -0.052 4.052 15 C 0.135 3.865 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.975 -9.754 -8.008 18.100 hybrid contribution 0.607 1.887 1.107 2.270 sum -12.368 -7.868 -6.901 16.201 Atomic orbital electron populations 1.22531 0.96226 1.02153 1.03623 1.21160 0.94638 0.81762 1.02660 1.58443 1.79938 1.23233 1.22613 1.19640 0.91341 0.95999 0.86154 1.24969 1.01634 0.98701 1.05652 1.20575 0.96667 0.96674 1.01107 1.20267 0.95438 1.00716 0.99756 1.25611 1.04389 0.97589 1.07969 1.83972 1.10708 1.18873 1.51451 1.02178 0.73047 0.73440 0.72678 1.93599 1.86013 1.29410 1.85085 1.93516 1.71681 1.76547 1.56009 1.57707 1.25162 1.34128 1.66984 1.21349 1.02308 0.86185 0.95349 1.19054 0.85972 0.86783 0.94643 1.21479 1.22028 1.13867 0.99388 0.92234 1.24914 0.95884 0.97367 0.95746 1.69911 1.27241 1.34848 1.21485 0.86527 0.78738 0.80587 0.81806 1.20605 1.21033 1.19701 0.91123 0.91951 0.92064 0.90903 0.90388 0.87484 0.89610 0.82494 0.84325 0.82217 0.94312 0.90377 0.91675 0.94770 0.94581 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 10.02 37.16 0.37 -1.90 16 2 C 0.12 1.55 6.09 -4.04 -0.02 1.53 16 3 N -1.01 -15.51 2.85 -115.66 -0.33 -15.84 16 4 C 0.20 2.82 5.86 -5.19 -0.03 2.78 16 5 C -0.19 -2.71 5.50 -36.00 -0.20 -2.91 16 6 C -0.12 -1.80 9.81 -41.21 -0.40 -2.21 16 7 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 8 C -0.22 -2.47 11.23 29.04 0.33 -2.14 16 9 S 0.09 1.00 20.46 -107.50 -2.20 -1.20 16 10 S 2.78 55.23 5.96 -107.50 -0.64 54.59 16 11 O -0.96 -21.99 15.03 -57.17 -0.86 -22.85 16 12 O -0.99 -20.83 15.71 -57.17 -0.90 -21.73 16 13 N -1.00 -20.54 3.23 -123.05 -0.40 -20.94 16 14 C 0.09 1.62 10.68 59.85 0.64 2.26 16 15 C 0.26 6.31 5.08 -5.19 -0.03 6.28 16 16 C -0.53 -14.66 9.38 -34.44 -0.32 -14.98 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.07 0.84 4.31 -41.54 -0.18 0.66 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 28 H 0.08 0.97 7.61 -51.93 -0.40 0.57 16 29 H 0.11 1.69 7.30 -51.93 -0.38 1.31 16 30 H 0.09 0.99 8.00 -51.93 -0.42 0.57 16 31 H 0.16 2.66 7.24 -52.49 -0.38 2.27 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 36 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 37 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.04 0.92 7.31 -51.93 -0.38 0.54 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -32.38 346.31 -9.98 -42.37 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.41 Total: 0.38 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.19 Total: -11.69 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.01 Total: -61.74 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.76 Total: -44.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 56.23 SS G_CDS: -2.84 Total: 53.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.38 -9.98 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075656490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.149 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds