Wall clock time and date at job start Tue Mar 31 2020 12:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46691 * 2 1 4 4 C 1.46498 * 120.00239 * 274.72301 * 3 2 1 5 5 C 1.50703 * 109.46964 * 84.99935 * 4 3 2 6 6 C 1.33394 * 125.19646 * 90.00026 * 5 4 3 7 7 C 1.38425 * 114.91472 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.92436 * 0.02562 * 7 6 5 9 9 S 1.75874 * 125.20590 * 269.69779 * 5 4 3 10 10 S 1.65597 * 119.99791 * 95.00526 * 3 2 1 11 11 O 1.42101 * 106.40154 * 203.53789 * 10 3 2 12 12 O 1.42106 * 106.40098 * 336.45446 * 10 3 2 13 13 N 1.65596 * 107.22389 * 89.99756 * 10 3 2 14 14 C 1.46498 * 120.00027 * 270.00475 * 13 10 3 15 15 C 1.46502 * 120.00149 * 89.99526 * 13 10 3 16 16 C 1.50702 * 109.46993 * 95.00515 * 15 13 10 17 17 H 1.08002 * 119.99502 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99773 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00239 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47140 * 89.99727 * 20 18 16 22 22 H 1.48501 * 109.47144 * 209.99756 * 20 18 16 23 23 H 1.48504 * 109.47067 * 329.99797 * 20 18 16 24 24 H 1.08995 * 109.47574 * 60.00208 * 1 2 3 25 25 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47659 * 299.99430 * 1 2 3 27 27 H 1.08999 * 109.46983 * 240.00261 * 2 1 3 28 28 H 1.08998 * 109.47326 * 120.00250 * 2 1 3 29 29 H 1.08990 * 109.47572 * 205.00129 * 4 3 2 30 30 H 1.09003 * 109.47280 * 325.00485 * 4 3 2 31 31 H 1.07992 * 122.54178 * 359.96182 * 6 5 4 32 32 H 1.08001 * 122.53718 * 180.02562 * 7 6 5 33 33 H 1.08003 * 125.20440 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47839 * 89.99157 * 14 13 10 35 35 H 1.09002 * 109.47537 * 209.99546 * 14 13 10 36 36 H 1.09005 * 109.47090 * 329.99442 * 14 13 10 37 37 H 1.09000 * 109.46966 * 215.00458 * 15 13 10 38 38 H 1.09003 * 109.47007 * 335.00155 * 15 13 10 39 39 H 0.96994 * 119.99621 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1639 2.1068 -1.2644 5 6 0.8432 2.7262 -1.6431 6 6 0.4358 3.9456 -1.2873 7 6 -0.8179 4.3009 -1.7544 8 6 -1.4287 3.3700 -2.4891 9 16 -0.3932 1.9550 -2.6278 10 16 2.4121 2.1202 1.4287 11 8 2.3055 3.5186 1.1999 12 8 1.6868 1.4414 2.4448 13 7 4.0143 1.8138 1.7137 14 6 4.4090 0.6239 2.4717 15 6 5.0371 2.7326 1.2079 16 6 5.4043 3.7188 2.2866 17 1 4.9235 3.6666 3.2523 18 6 6.3532 4.6882 2.0404 19 7 6.9383 4.7521 0.8643 20 14 6.8078 5.9111 3.3774 21 1 7.9308 5.3685 4.1834 22 1 7.2203 7.1946 2.7548 23 1 5.6337 6.1422 4.2568 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.9130 2.8901 -1.1497 30 1 2.4781 1.4151 -2.0461 31 1 1.0382 4.6054 -0.6807 32 1 -1.2675 5.2592 -1.5403 33 1 -2.4072 3.4716 -2.9348 34 1 4.5591 -0.2103 1.7863 35 1 5.3366 0.8254 3.0074 36 1 3.6248 0.3711 3.1854 37 1 5.9219 2.1666 0.9166 38 1 4.6477 3.2689 0.3425 39 1 7.6056 5.4344 0.6911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075656490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:58 Heat of formation + Delta-G solvation = -56.733577 kcal Electronic energy + Delta-G solvation = -23648.945876 eV Core-core repulsion = 20230.670725 eV Total energy + Delta-G solvation = -3418.275150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.17511 -38.32935 -37.40879 -37.21387 -36.79296 -34.50805 -32.49824 -30.27399 -29.66893 -26.86420 -26.77648 -24.21207 -24.00966 -23.50099 -20.20496 -19.98939 -19.02402 -18.59691 -18.23356 -17.82266 -17.33053 -16.65418 -16.33986 -15.91812 -15.22985 -15.07209 -14.93115 -14.68955 -14.21633 -14.03715 -13.94885 -13.91974 -13.65599 -13.36903 -13.29384 -13.15985 -13.04786 -12.96427 -12.92901 -12.72957 -12.47928 -12.42739 -12.09265 -11.96852 -11.85101 -11.75818 -11.62118 -10.60417 -10.27211 -9.81022 -9.61805 -9.16627 -8.21087 -6.32566 -0.42794 0.08092 0.72059 1.05386 1.37787 1.40088 1.50506 1.78807 2.09454 2.39355 2.59802 3.09884 3.39302 3.68865 3.87010 4.11268 4.18213 4.28219 4.36477 4.46836 4.55802 4.65726 4.70386 4.74615 4.76810 4.80596 4.90117 5.04796 5.17577 5.20243 5.26795 5.38094 5.42303 5.44028 5.57997 5.62601 5.70208 5.95289 6.10502 6.75011 7.36233 8.86269 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.004782 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.277998 B = 5853.475553 C = 6726.482953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.112 3.888 3 N -0.996 5.996 4 C 0.193 3.807 5 C -0.214 4.214 6 C -0.142 4.142 7 C -0.152 4.152 8 C -0.209 4.209 9 S 0.141 5.859 10 S 2.787 3.213 11 O -0.998 6.998 12 O -1.008 7.008 13 N -1.005 6.005 14 C 0.088 3.912 15 C 0.273 3.727 16 C -0.549 4.549 17 H 0.048 0.952 18 C 0.016 3.984 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.194 0.806 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 -10.669 -8.809 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.012 4.012 3 N -0.836 5.836 4 C 0.066 3.934 5 C -0.333 4.333 6 C -0.174 4.174 7 C -0.182 4.182 8 C -0.345 4.345 9 S 0.404 5.596 10 S 2.797 3.203 11 O -0.982 6.982 12 O -0.992 6.992 13 N -0.847 5.847 14 C -0.058 4.058 15 C 0.150 3.850 16 C -0.589 4.589 17 H 0.066 0.934 18 C -0.184 4.184 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.211 0.789 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.088 -11.499 -9.075 20.324 hybrid contribution 0.861 2.339 1.377 2.847 sum -13.227 -9.160 -7.698 17.836 Atomic orbital electron populations 1.22541 0.95843 1.03691 1.02378 1.21542 0.95044 0.79994 1.04629 1.58063 1.79575 1.24508 1.21417 1.19746 0.91293 0.96117 0.86262 1.25020 1.02550 0.98978 1.06719 1.20561 0.97837 0.97129 1.01904 1.20353 0.94838 1.02120 1.00897 1.26057 1.05326 0.96765 1.06318 1.83686 1.08668 1.17830 1.49399 1.01634 0.72732 0.72659 0.73287 1.93548 1.86417 1.32372 1.85829 1.93485 1.71756 1.76541 1.57372 1.57620 1.24549 1.34683 1.67800 1.21576 1.02137 0.85946 0.96130 1.18616 0.86419 0.86709 0.93279 1.21800 1.22229 1.15108 0.99727 0.93412 1.25678 0.95867 0.98998 0.97842 1.69991 1.27673 1.35584 1.22872 0.85640 0.78566 0.78671 0.79361 1.19001 1.20242 1.20171 0.90864 0.89024 0.94774 0.87258 0.90074 0.90141 0.86166 0.85821 0.83052 0.78900 0.90685 0.91129 0.90981 0.95368 0.96299 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.07 10.02 71.98 0.72 -3.35 16 2 C 0.11 2.54 6.09 86.38 0.53 3.07 16 3 N -1.00 -30.13 2.85 -519.85 -1.48 -31.62 16 4 C 0.19 5.49 5.86 85.63 0.50 5.99 16 5 C -0.21 -6.00 5.50 24.59 0.14 -5.86 16 6 C -0.14 -4.47 9.81 21.22 0.21 -4.26 16 7 C -0.15 -3.78 10.18 21.22 0.22 -3.57 16 8 C -0.21 -4.15 11.23 66.72 0.75 -3.40 16 9 S 0.14 2.86 20.46 -56.49 -1.16 1.70 16 10 S 2.79 113.38 5.96 -56.49 -0.34 113.05 16 11 O -1.00 -48.47 15.03 -128.00 -1.92 -50.39 16 12 O -1.01 -42.61 15.71 -128.00 -2.01 -44.62 16 13 N -1.00 -42.02 3.23 -543.21 -1.75 -43.77 16 14 C 0.09 2.94 10.68 127.77 1.36 4.31 16 15 C 0.27 13.82 5.08 85.63 0.43 14.25 16 16 C -0.55 -31.32 9.38 25.60 0.24 -31.08 16 17 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 18 C 0.02 0.90 5.46 84.65 0.46 1.37 16 19 N -0.92 -53.73 13.29 21.45 0.28 -53.44 16 20 Si 0.95 44.86 29.54 68.60 2.03 46.88 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H 0.07 1.54 4.31 -9.00 -0.04 1.50 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 1.73 8.00 -2.39 -0.02 1.71 16 28 H 0.08 1.81 7.61 -2.39 -0.02 1.79 16 29 H 0.08 2.71 7.30 -2.39 -0.02 2.69 16 30 H 0.12 2.52 8.00 -2.39 -0.02 2.50 16 31 H 0.12 4.63 7.24 -2.91 -0.02 4.61 16 32 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.07 2.31 7.02 -2.38 -0.02 2.29 16 37 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 38 H 0.02 1.02 7.31 -2.39 -0.02 1.00 16 39 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.84 346.31 0.22 -71.62 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.02 Total: 13.14 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.56 Total: -22.54 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -2.95 Total: -128.83 kcal Atomic # 8 Polarization: -91.08 SS G_CDS: -3.94 Total: -95.02 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 116.24 SS G_CDS: -1.49 Total: 114.75 kcal Total: -71.84 0.22 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075656490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.883 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds