Wall clock time and date at job start Tue Mar 31 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99791 * 2 1 4 4 C 1.50703 * 109.46700 * 269.99678 * 3 2 1 5 5 N 1.33237 * 125.52711 * 90.00599 * 4 3 2 6 6 C 1.30833 * 109.83316 * 179.97438 * 5 4 3 7 7 N 1.34427 * 108.07386 * 359.97438 * 6 5 4 8 8 H 0.96999 * 126.82215 * 179.74469 * 7 6 5 9 9 N 1.30718 * 125.52725 * 269.99742 * 4 3 2 10 10 C 1.34778 * 120.00109 * 179.97438 * 2 1 3 11 11 O 1.21608 * 119.99947 * 175.70511 * 10 2 1 12 12 C 1.47431 * 119.99862 * 355.70394 * 10 2 1 13 13 C 1.39674 * 120.21370 * 48.65688 * 12 10 2 14 14 C 1.37810 * 119.93644 * 179.97438 * 13 12 10 15 15 C 1.38664 * 120.37980 * 0.02562 * 14 13 12 16 16 C 1.37911 * 120.43975 * 359.97438 * 15 14 13 17 17 C 1.39113 * 120.04790 * 359.71187 * 16 15 14 18 18 S 1.76203 * 120.18779 * 180.27612 * 17 16 15 19 19 C 1.76194 * 100.00061 * 351.89471 * 18 17 16 20 20 H 1.08000 * 120.00353 * 4.17031 * 19 18 17 21 21 C 1.38810 * 120.00238 * 184.17084 * 19 18 17 22 22 N 1.31557 * 119.99248 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46993 * 89.99729 * 23 21 19 25 25 H 1.48499 * 109.46691 * 209.99904 * 23 21 19 26 26 H 1.48501 * 109.46756 * 329.99543 * 23 21 19 27 27 H 1.09002 * 109.46778 * 94.87241 * 1 2 3 28 28 H 1.09004 * 109.46907 * 214.86699 * 1 2 3 29 29 H 1.08997 * 109.47466 * 334.86488 * 1 2 3 30 30 H 1.09004 * 109.47018 * 150.00193 * 3 2 1 31 31 H 1.08994 * 109.47352 * 29.99897 * 3 2 1 32 32 H 1.07999 * 125.96154 * 179.97438 * 6 5 4 33 33 H 1.07991 * 120.03335 * 359.97438 * 13 12 10 34 34 H 1.07993 * 119.80992 * 180.02562 * 14 13 12 35 35 H 1.07999 * 119.77966 * 179.97438 * 15 14 13 36 36 H 1.07995 * 119.97572 * 180.02562 * 16 15 14 37 37 H 0.97004 * 119.99320 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 7 1.6386 2.4693 -2.1509 6 6 2.1553 2.6563 -3.3382 7 7 3.3282 2.0016 -3.3905 8 1 3.9352 1.9558 -4.1457 9 7 3.4966 1.3911 -2.1370 10 6 2.1389 -1.1672 0.0005 11 8 3.3524 -1.1687 -0.0783 12 6 1.4048 -2.4421 0.0967 13 6 0.3066 -2.6851 -0.7313 14 6 -0.3751 -3.8791 -0.6369 15 6 0.0224 -4.8431 0.2770 16 6 1.1045 -4.6196 1.1022 17 6 1.8097 -3.4235 1.0177 18 16 3.1973 -3.1370 2.0652 19 6 3.0704 -4.5348 3.1303 20 1 2.3130 -5.2836 2.9507 21 6 3.9437 -4.6738 4.2002 22 7 4.8665 -3.7619 4.4185 23 14 3.8096 -6.1561 5.3290 24 1 4.6651 -7.2530 4.8093 25 1 4.2598 -5.7814 6.6936 26 1 2.3974 -6.6121 5.3814 27 1 -0.3633 -0.0873 -1.0240 28 1 -0.3633 -0.8432 0.5875 29 1 -0.3634 0.9303 0.4365 30 1 3.1499 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.7161 3.2356 -4.1369 33 1 -0.0081 -1.9381 -1.4449 34 1 -1.2237 -4.0649 -1.2785 35 1 -0.5191 -5.7752 0.3431 36 1 1.4078 -5.3759 1.8111 37 1 5.4766 -3.8589 5.1665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080543698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:13 Heat of formation + Delta-G solvation = 93.805060 kcal Electronic energy + Delta-G solvation = -23531.397550 eV Core-core repulsion = 20016.499045 eV Total energy + Delta-G solvation = -3514.898505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15075 -39.68021 -37.54532 -35.36448 -32.83869 -32.73439 -31.63289 -30.57207 -30.32490 -27.80664 -26.17049 -25.80294 -23.11466 -22.58336 -21.99922 -20.72208 -19.34037 -18.41712 -17.85204 -16.81659 -16.20323 -16.07355 -15.56424 -15.24642 -15.02429 -15.00246 -14.30691 -14.16821 -13.51486 -13.07929 -12.99266 -12.90441 -12.52760 -12.25279 -12.19914 -12.11024 -11.67958 -11.63242 -11.19929 -11.12176 -10.99430 -10.31831 -10.26669 -10.12358 -9.87157 -9.78827 -9.56546 -9.36351 -8.73216 -8.57682 -8.37797 -8.28623 -6.55460 -6.47331 -4.18405 1.52128 1.66284 2.01243 2.58033 2.66067 3.09399 3.13059 3.19875 3.27722 3.38640 3.55352 4.03632 4.06558 4.37948 4.58772 4.83641 4.94553 5.07029 5.13503 5.32274 5.39658 5.48783 5.60233 5.67270 5.77059 5.92112 5.93798 6.13745 6.14420 6.30494 6.36800 6.57555 6.71059 6.88993 6.91080 7.00893 7.13113 7.44354 7.58571 7.67922 8.01139 8.15882 8.67277 8.99265 10.58119 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.003822 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.615361 B = 7323.428478 C = 8371.717893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.612 5.612 3 C 0.211 3.789 4 C 0.209 3.791 5 N -0.537 5.537 6 C 0.251 3.749 7 N -0.488 5.488 8 H 0.440 0.560 9 N -0.279 5.279 10 C 0.567 3.433 11 O -0.501 6.501 12 C -0.161 4.161 13 C -0.068 4.068 14 C -0.180 4.180 15 C -0.080 4.080 16 C -0.152 4.152 17 C -0.047 4.047 18 S 0.111 5.889 19 C -0.571 4.571 20 H 0.094 0.906 21 C 0.081 3.919 22 N -0.859 5.859 23 Si 0.923 3.077 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.220 0.780 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 10.361 -12.955 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.348 5.348 3 C 0.085 3.915 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.048 4.048 7 N -0.207 5.207 8 H 0.285 0.715 9 N -0.108 5.108 10 C 0.356 3.644 11 O -0.374 6.374 12 C -0.175 4.175 13 C -0.088 4.088 14 C -0.205 4.205 15 C -0.101 4.101 16 C -0.177 4.177 17 C -0.166 4.166 18 S 0.372 5.628 19 C -0.718 4.718 20 H 0.111 0.889 21 C -0.130 4.130 22 N -0.492 5.492 23 Si 0.748 3.252 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.236 0.764 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.496 11.014 -12.155 18.035 hybrid contribution -0.819 -1.744 -0.344 1.957 sum -8.315 9.270 -12.500 17.644 Atomic orbital electron populations 1.21904 0.79164 1.03346 1.01410 1.47688 1.07042 1.04689 1.75351 1.19581 0.99897 0.85786 0.86280 1.24928 0.88657 0.94858 0.99053 1.70403 1.31951 1.21034 1.03208 1.26044 0.85643 0.95964 0.97176 1.48286 1.19146 1.39434 1.13802 0.71488 1.78320 1.23339 1.18468 0.90711 1.18408 0.87188 0.83309 0.75478 1.90836 1.13251 1.86680 1.46677 1.19094 1.00025 0.94685 1.03660 1.20984 0.93451 0.97062 0.97274 1.20656 1.02315 0.95098 1.02410 1.21078 0.96029 0.98137 0.94876 1.21408 0.97074 0.97588 1.01653 1.22883 1.00369 0.94727 0.98587 1.84146 1.22289 1.30699 1.25673 1.23612 1.22189 1.10675 1.15355 0.88877 1.25107 0.93932 0.97313 0.96665 1.69981 1.16762 1.33287 1.29174 0.86086 0.79038 0.81017 0.79059 1.19864 1.20462 1.19194 0.93163 0.90251 0.91062 0.87285 0.87718 0.76406 0.86785 0.87001 0.86958 0.84358 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 9.10 59.85 0.54 1.60 16 2 N -0.61 -9.87 2.86 -184.23 -0.53 -10.39 16 3 C 0.21 3.09 6.04 -5.19 -0.03 3.06 16 4 C 0.21 3.10 7.72 -156.85 -1.21 1.89 16 5 N -0.54 -6.76 11.19 -11.98 -0.13 -6.90 16 6 C 0.25 2.21 13.13 -90.66 -1.19 1.02 16 7 N -0.49 -4.94 7.45 29.53 0.22 -4.72 16 8 H 0.44 2.77 8.96 -182.34 -1.63 1.13 16 9 N -0.28 -4.37 12.80 32.42 0.41 -3.95 16 10 C 0.57 11.58 6.71 -12.52 -0.08 11.49 16 11 O -0.50 -12.03 15.30 5.27 0.08 -11.95 16 12 C -0.16 -3.27 4.92 -104.75 -0.51 -3.78 16 13 C -0.07 -1.13 7.77 -39.20 -0.30 -1.43 16 14 C -0.18 -2.82 10.02 -39.58 -0.40 -3.22 16 15 C -0.08 -1.37 10.03 -39.54 -0.40 -1.76 16 16 C -0.15 -3.17 9.24 -39.38 -0.36 -3.54 16 17 C -0.05 -1.08 6.13 -38.39 -0.24 -1.32 16 18 S 0.11 2.98 19.68 -107.50 -2.12 0.87 16 19 C -0.57 -15.72 9.08 30.94 0.28 -15.44 16 20 H 0.09 2.42 4.86 -52.49 -0.26 2.16 16 21 C 0.08 2.21 5.49 -17.46 -0.10 2.11 16 22 N -0.86 -24.75 13.22 55.49 0.73 -24.01 16 23 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H 0.05 0.58 7.06 -51.93 -0.37 0.21 16 28 H 0.08 1.05 6.26 -51.93 -0.33 0.72 16 29 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 30 H 0.11 1.78 7.48 -51.93 -0.39 1.39 16 31 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 32 H 0.22 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.11 1.62 6.28 -52.49 -0.33 1.29 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.14 3.00 4.99 -52.49 -0.26 2.74 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -36.25 332.82 -10.11 -46.37 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.78 Total: 3.39 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.00 Total: -9.33 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.71 Total: -49.98 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.12 Total: 0.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.25 -10.11 -46.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080543698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.173 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds