Wall clock time and date at job start Tue Mar 31 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99791 * 2 1 4 4 C 1.50703 * 109.46700 * 269.99678 * 3 2 1 5 5 N 1.33237 * 125.52711 * 90.00599 * 4 3 2 6 6 C 1.30833 * 109.83316 * 179.97438 * 5 4 3 7 7 N 1.34427 * 108.07386 * 359.97438 * 6 5 4 8 8 H 0.96999 * 126.82215 * 179.74469 * 7 6 5 9 9 N 1.30718 * 125.52725 * 269.99742 * 4 3 2 10 10 C 1.34778 * 120.00109 * 179.97438 * 2 1 3 11 11 O 1.21608 * 119.99947 * 175.70511 * 10 2 1 12 12 C 1.47431 * 119.99862 * 355.70394 * 10 2 1 13 13 C 1.39674 * 120.21370 * 48.65688 * 12 10 2 14 14 C 1.37810 * 119.93644 * 179.97438 * 13 12 10 15 15 C 1.38664 * 120.37980 * 0.02562 * 14 13 12 16 16 C 1.37911 * 120.43975 * 359.97438 * 15 14 13 17 17 C 1.39113 * 120.04790 * 359.71187 * 16 15 14 18 18 S 1.76203 * 120.18779 * 180.27612 * 17 16 15 19 19 C 1.76194 * 100.00061 * 351.89471 * 18 17 16 20 20 H 1.08000 * 120.00353 * 4.17031 * 19 18 17 21 21 C 1.38810 * 120.00238 * 184.17084 * 19 18 17 22 22 N 1.31557 * 119.99248 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46993 * 89.99729 * 23 21 19 25 25 H 1.48499 * 109.46691 * 209.99904 * 23 21 19 26 26 H 1.48501 * 109.46756 * 329.99543 * 23 21 19 27 27 H 1.09002 * 109.46778 * 94.87241 * 1 2 3 28 28 H 1.09004 * 109.46907 * 214.86699 * 1 2 3 29 29 H 1.08997 * 109.47466 * 334.86488 * 1 2 3 30 30 H 1.09004 * 109.47018 * 150.00193 * 3 2 1 31 31 H 1.08994 * 109.47352 * 29.99897 * 3 2 1 32 32 H 1.07999 * 125.96154 * 179.97438 * 6 5 4 33 33 H 1.07991 * 120.03335 * 359.97438 * 13 12 10 34 34 H 1.07993 * 119.80992 * 180.02562 * 14 13 12 35 35 H 1.07999 * 119.77966 * 179.97438 * 15 14 13 36 36 H 1.07995 * 119.97572 * 180.02562 * 16 15 14 37 37 H 0.97004 * 119.99320 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 7 1.6386 2.4693 -2.1509 6 6 2.1553 2.6563 -3.3382 7 7 3.3282 2.0016 -3.3905 8 1 3.9352 1.9558 -4.1457 9 7 3.4966 1.3911 -2.1370 10 6 2.1389 -1.1672 0.0005 11 8 3.3524 -1.1687 -0.0783 12 6 1.4048 -2.4421 0.0967 13 6 0.3066 -2.6851 -0.7313 14 6 -0.3751 -3.8791 -0.6369 15 6 0.0224 -4.8431 0.2770 16 6 1.1045 -4.6196 1.1022 17 6 1.8097 -3.4235 1.0177 18 16 3.1973 -3.1370 2.0652 19 6 3.0704 -4.5348 3.1303 20 1 2.3130 -5.2836 2.9507 21 6 3.9437 -4.6738 4.2002 22 7 4.8665 -3.7619 4.4185 23 14 3.8096 -6.1561 5.3290 24 1 4.6651 -7.2530 4.8093 25 1 4.2598 -5.7814 6.6936 26 1 2.3974 -6.6121 5.3814 27 1 -0.3633 -0.0873 -1.0240 28 1 -0.3633 -0.8432 0.5875 29 1 -0.3634 0.9303 0.4365 30 1 3.1499 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.7161 3.2356 -4.1369 33 1 -0.0081 -1.9381 -1.4449 34 1 -1.2237 -4.0649 -1.2785 35 1 -0.5191 -5.7752 0.3431 36 1 1.4078 -5.3759 1.8111 37 1 5.4766 -3.8589 5.1665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080543698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:13 Heat of formation + Delta-G solvation = 68.929214 kcal Electronic energy + Delta-G solvation = -23532.476248 eV Core-core repulsion = 20016.499045 eV Total energy + Delta-G solvation = -3515.977203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.05679 -41.14973 -39.04062 -36.75300 -34.78317 -33.81276 -32.67458 -31.94154 -31.80795 -28.93090 -27.89071 -27.36479 -24.39571 -23.54249 -23.49612 -21.89851 -20.73918 -19.67744 -19.22632 -18.28857 -17.66354 -17.44948 -17.05880 -16.76822 -16.25978 -15.99117 -15.76834 -15.50420 -15.06517 -14.64544 -14.45072 -14.31202 -13.77134 -13.69590 -13.39401 -13.31382 -13.04146 -12.99700 -12.87088 -12.81894 -12.56120 -12.04589 -11.48873 -11.40703 -11.25502 -11.06067 -11.01634 -10.76370 -10.42389 -10.30877 -9.83100 -9.74911 -8.51634 -8.47151 -6.27290 0.13888 0.51246 0.66424 1.26333 1.38003 1.46045 1.59359 1.67065 1.72410 1.90442 2.18721 2.36422 2.82941 2.96215 3.19248 3.21742 3.57265 3.78077 4.00857 4.19552 4.24341 4.34590 4.45074 4.51596 4.60378 4.62743 4.72807 4.83077 4.95399 5.09442 5.26550 5.31358 5.35989 5.45788 5.49665 5.56619 5.66094 6.08190 6.15219 6.26356 6.34095 6.93911 7.11165 7.19220 8.60101 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.003822 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.615361 B = 7323.428478 C = 8371.717893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.208 3.792 4 C 0.202 3.798 5 N -0.558 5.558 6 C 0.274 3.726 7 N -0.480 5.480 8 H 0.455 0.545 9 N -0.339 5.339 10 C 0.558 3.442 11 O -0.552 6.552 12 C -0.164 4.164 13 C -0.062 4.062 14 C -0.149 4.149 15 C -0.073 4.073 16 C -0.168 4.168 17 C -0.066 4.066 18 S -0.002 6.002 19 C -0.578 4.578 20 H 0.100 0.900 21 C 0.022 3.978 22 N -0.906 5.906 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.255 1.255 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.278 0.722 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 10.298 -15.644 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.082 3.918 4 C -0.082 4.082 5 N -0.288 5.288 6 C -0.024 4.024 7 N -0.200 5.200 8 H 0.303 0.697 9 N -0.170 5.170 10 C 0.347 3.653 11 O -0.430 6.430 12 C -0.177 4.177 13 C -0.082 4.082 14 C -0.171 4.171 15 C -0.093 4.093 16 C -0.194 4.194 17 C -0.183 4.183 18 S 0.254 5.746 19 C -0.725 4.725 20 H 0.118 0.882 21 C -0.184 4.184 22 N -0.541 5.541 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.178 1.178 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.293 0.707 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.139 0.861 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.877 10.977 -14.934 22.013 hybrid contribution 0.245 -1.579 0.147 1.605 sum -11.632 9.398 -14.787 21.030 Atomic orbital electron populations 1.22153 0.76567 1.04703 1.02734 1.47708 1.08595 1.03894 1.73516 1.19636 0.99045 0.85819 0.87259 1.24713 0.89122 0.95524 0.98877 1.70383 1.32375 1.21524 1.04490 1.27152 0.84208 0.93999 0.97052 1.48188 1.20095 1.38933 1.12771 0.69665 1.78227 1.24836 1.20740 0.93159 1.18625 0.86752 0.84643 0.75258 1.90809 1.15432 1.87488 1.49223 1.19394 1.00831 0.94205 1.03256 1.21391 0.91794 0.98532 0.96502 1.21307 1.02070 0.93089 1.00642 1.21517 0.94292 1.00089 0.93425 1.21449 0.98604 0.96579 1.02726 1.22733 0.99607 0.96723 0.99220 1.84320 1.27780 1.33148 1.29315 1.23857 1.22532 1.10476 1.15593 0.88229 1.26199 0.93369 1.00514 0.98277 1.70141 1.18087 1.35707 1.30141 0.84952 0.79583 0.76826 0.76704 1.19197 1.19777 1.17843 0.91207 0.90941 0.88180 0.90446 0.84518 0.70652 0.83424 0.81659 0.82984 0.86057 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.78 9.10 127.77 1.16 2.94 16 2 N -0.60 -19.41 2.86 -855.03 -2.44 -21.85 16 3 C 0.21 6.26 6.04 85.63 0.52 6.78 16 4 C 0.20 5.93 7.72 138.63 1.07 7.00 16 5 N -0.56 -12.73 11.19 -191.80 -2.15 -14.87 16 6 C 0.27 3.90 13.13 180.36 2.37 6.26 16 7 N -0.48 -8.95 7.45 -60.49 -0.45 -9.40 16 8 H 0.46 4.98 8.96 -213.10 -1.91 3.07 16 9 N -0.34 -10.76 12.80 -51.33 -0.66 -11.42 16 10 C 0.56 23.63 6.71 86.66 0.58 24.21 16 11 O -0.55 -28.63 15.30 -4.06 -0.06 -28.70 16 12 C -0.16 -6.69 4.92 -19.95 -0.10 -6.78 16 13 C -0.06 -1.86 7.77 22.52 0.17 -1.68 16 14 C -0.15 -3.81 10.02 22.27 0.22 -3.58 16 15 C -0.07 -2.21 10.03 22.29 0.22 -1.98 16 16 C -0.17 -7.03 9.24 22.40 0.21 -6.82 16 17 C -0.07 -3.14 6.13 23.04 0.14 -3.00 16 18 S 0.00 -0.09 19.68 -56.49 -1.11 -1.20 16 19 C -0.58 -33.73 9.08 67.96 0.62 -33.11 16 20 H 0.10 5.44 4.86 -2.91 -0.01 5.42 16 21 C 0.02 1.26 5.49 84.87 0.47 1.73 16 22 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 23 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.07 1.31 7.06 -2.39 -0.02 1.29 16 28 H 0.07 1.73 6.26 -2.38 -0.01 1.72 16 29 H 0.10 1.68 7.84 -2.39 -0.02 1.66 16 30 H 0.08 2.80 7.48 -2.38 -0.02 2.78 16 31 H 0.14 3.06 7.86 -2.39 -0.02 3.04 16 32 H 0.28 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.15 3.44 6.28 -2.91 -0.02 3.42 16 34 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.12 5.41 4.99 -2.91 -0.01 5.40 16 37 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -89.57 332.82 2.33 -87.23 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.76 Total: 17.78 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 7.65 Total: -8.05 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -5.41 Total: -112.86 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.06 Total: -28.70 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.11 Total: -1.20 kcal Total: -89.57 2.33 -87.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080543698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.163 kcal (2) G-P(sol) polarization free energy of solvation -89.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds