Wall clock time and date at job start Tue Mar 31 2020 12:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47174 * 2 1 4 4 C 1.50705 * 109.47322 * 240.00149 * 2 1 3 5 5 H 1.08000 * 119.99542 * 239.99747 * 4 2 1 6 6 C 1.37874 * 120.00187 * 59.99764 * 4 2 1 7 7 N 1.31509 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00044 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47189 * 59.99492 * 8 6 4 10 10 H 1.48500 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46686 * 299.99715 * 8 6 4 12 12 N 1.46498 * 109.47349 * 119.99718 * 2 1 3 13 13 C 1.46502 * 119.99707 * 60.00303 * 12 2 1 14 14 C 1.34779 * 120.00348 * 239.99991 * 12 2 1 15 15 O 1.21503 * 119.99526 * 2.00585 * 14 12 2 16 16 C 1.48268 * 120.00206 * 181.99777 * 14 12 2 17 17 C 1.40259 * 119.24226 * 172.74386 * 16 14 12 18 18 C 1.36521 * 119.82377 * 179.97438 * 17 16 14 19 19 C 1.40736 * 118.25000 * 0.02562 * 18 17 16 20 20 C 1.40441 * 121.27129 * 179.97438 * 19 18 17 21 21 C 1.36098 * 119.66433 * 180.02562 * 20 19 18 22 22 C 1.39559 * 120.90787 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.47592 * 179.97438 * 22 21 20 24 24 C 1.36119 * 121.04953 * 359.92569 * 22 21 20 25 25 C 1.40788 * 119.72916 * 0.10118 * 24 22 21 26 26 N 1.31890 * 119.24337 * 352.72944 * 16 14 12 27 27 H 1.08997 * 109.46842 * 60.00486 * 1 2 3 28 28 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46852 * 300.00186 * 1 2 3 30 30 H 0.97000 * 120.00241 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.46536 * 263.74563 * 13 12 2 32 32 H 1.08995 * 109.47221 * 23.74809 * 13 12 2 33 33 H 1.09002 * 109.46606 * 143.75266 * 13 12 2 34 34 H 1.08004 * 120.09174 * 359.70806 * 17 16 14 35 35 H 1.08001 * 120.87818 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.16278 * 0.02562 * 20 19 18 37 37 H 1.08006 * 119.54420 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.13430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0080 9 1 1.8261 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0567 1.1378 1.9097 16 6 3.3240 -0.7467 3.2711 17 6 4.2502 -0.0980 4.1010 18 6 4.7462 -0.7415 5.1981 19 6 4.3032 -2.0517 5.4587 20 6 4.7723 -2.7725 6.5691 21 6 4.3223 -4.0378 6.7898 22 6 3.3999 -4.6313 5.9268 23 17 2.8514 -6.2477 6.2433 24 6 2.9228 -3.9626 4.8415 25 6 3.3648 -2.6519 4.5791 26 7 2.9142 -1.9747 3.5233 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.7089 1.1613 -3.4844 31 1 0.8014 -2.1451 2.0916 32 1 1.4214 -2.5684 0.4777 33 1 2.5075 -2.6093 1.8873 34 1 4.5734 0.9064 3.8703 35 1 5.4597 -0.2580 5.8488 36 1 5.4864 -2.3248 7.2443 37 1 4.6846 -4.5905 7.6440 38 1 2.2090 -4.4360 4.1836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084187718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:17 Heat of formation + Delta-G solvation = 32.568523 kcal Electronic energy + Delta-G solvation = -23599.658788 eV Core-core repulsion = 20047.768410 eV Total energy + Delta-G solvation = -3551.890378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18398 -39.10426 -37.50710 -36.26685 -35.45755 -33.82237 -32.74330 -30.88797 -30.27081 -29.15228 -26.16164 -25.26884 -25.02346 -23.86348 -22.48365 -21.55873 -19.22332 -18.29404 -17.60982 -16.93785 -16.35082 -15.77648 -15.46131 -15.10148 -14.99764 -14.67764 -14.25839 -14.12495 -13.73373 -13.63164 -13.04919 -12.91175 -12.48349 -12.42423 -12.19994 -11.95194 -11.60390 -11.45926 -11.30250 -11.27237 -11.04517 -10.83129 -10.69162 -10.62567 -10.25672 -10.16222 -9.73452 -9.15602 -8.92439 -8.86213 -8.54643 -8.42276 -7.57954 -6.07081 -4.15145 -0.00462 0.38891 1.68421 1.74897 2.32602 3.29301 3.33896 3.35097 3.41410 3.66017 4.02757 4.11300 4.28224 4.40098 4.53814 4.56011 4.75248 4.83932 4.92123 5.19256 5.24469 5.43715 5.56334 5.61546 5.75718 5.82018 6.03815 6.12777 6.21831 6.33791 6.41686 6.71688 6.80506 6.89135 7.06589 7.38202 7.50411 7.62502 7.71411 8.00906 8.18123 8.48161 8.77933 8.96449 9.50914 10.98328 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003325 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.296171 B = 8418.361746 C = 9353.436465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.561 5.561 13 C 0.081 3.919 14 C 0.546 3.454 15 O -0.545 6.545 16 C 0.139 3.861 17 C -0.119 4.119 18 C -0.064 4.064 19 C -0.095 4.095 20 C -0.081 4.081 21 C -0.111 4.111 22 C -0.022 4.022 23 Cl -0.065 7.065 24 C -0.074 4.074 25 C 0.127 3.873 26 N -0.431 5.431 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -9.964 19.822 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.289 5.289 13 C -0.062 4.062 14 C 0.330 3.670 15 O -0.424 6.424 16 C -0.014 4.014 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.050 4.050 23 Cl -0.036 7.036 24 C -0.093 4.093 25 C 0.004 3.996 26 N -0.144 5.144 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.607 -9.848 19.034 22.152 hybrid contribution 0.798 -0.366 -0.276 0.920 sum 6.405 -10.215 18.758 22.299 Atomic orbital electron populations 1.22074 0.97822 0.99618 1.00862 1.19074 0.91179 0.94544 0.79698 0.91764 1.21269 1.32016 1.13096 0.90153 0.92169 1.24879 0.94899 0.94965 0.98934 1.69868 1.36237 1.22546 1.23918 0.86534 0.79235 0.79614 0.81890 1.20176 1.21148 1.20228 1.48241 1.45930 1.12460 1.22270 1.22159 1.00934 0.82186 1.00967 1.17880 0.80571 0.86328 0.82228 1.90744 1.60459 1.15333 1.75826 1.21956 0.93884 0.89922 0.95687 1.21868 0.95975 1.02156 0.93917 1.21436 0.98158 0.92737 0.96694 1.19019 0.98328 0.95637 0.96756 1.20938 0.99171 0.93752 0.96146 1.20784 0.97014 0.95648 0.99552 1.20537 0.99432 0.87622 0.97458 1.98388 1.88842 1.21043 1.95318 1.20728 0.99784 0.92360 0.96434 1.18834 0.94766 0.94298 0.91665 1.68674 1.23702 1.06913 1.15097 0.88708 0.94980 0.96941 0.92585 0.93801 0.91191 0.89299 0.82899 0.83602 0.84228 0.84517 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 2 C 0.25 6.61 2.63 -69.08 -0.18 6.43 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.37 7.95 -34.44 -0.27 -14.64 16 5 H 0.06 1.62 7.44 -52.49 -0.39 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.56 -12.57 2.75 -176.22 -0.49 -13.05 16 13 C 0.08 1.52 8.22 59.85 0.49 2.02 16 14 C 0.55 11.78 7.66 -12.13 -0.09 11.69 16 15 O -0.55 -13.28 15.63 5.36 0.08 -13.20 16 16 C 0.14 2.37 6.63 -82.96 -0.55 1.82 16 17 C -0.12 -1.63 9.53 -39.44 -0.38 -2.01 16 18 C -0.06 -0.68 9.88 -39.26 -0.39 -1.06 16 19 C -0.10 -1.05 5.75 -106.71 -0.61 -1.67 16 20 C -0.08 -0.66 9.77 -39.52 -0.39 -1.05 16 21 C -0.11 -0.90 9.72 -39.86 -0.39 -1.29 16 22 C -0.02 -0.21 6.27 -39.85 -0.25 -0.46 16 23 Cl -0.06 -0.58 28.91 -51.86 -1.50 -2.08 16 24 C -0.07 -0.84 9.73 -39.38 -0.38 -1.22 16 25 C 0.13 1.68 6.61 -84.86 -0.56 1.12 16 26 N -0.43 -6.79 5.95 -7.55 -0.04 -6.83 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.37 7.12 -51.93 -0.37 1.00 16 33 H 0.09 1.55 5.27 -52.22 -0.28 1.28 16 34 H 0.15 2.02 7.62 -52.48 -0.40 1.62 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -30.93 334.97 -9.18 -40.11 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.18 Total: 0.23 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.71 Total: -1.83 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.10 Total: -44.38 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.93 -9.18 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084187718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.682 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds