Wall clock time and date at job start Tue Mar 31 2020 12:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47174 * 2 1 4 4 C 1.50705 * 109.47322 * 240.00149 * 2 1 3 5 5 H 1.08000 * 119.99542 * 239.99747 * 4 2 1 6 6 C 1.37874 * 120.00187 * 59.99764 * 4 2 1 7 7 N 1.31509 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00044 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47189 * 59.99492 * 8 6 4 10 10 H 1.48500 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46686 * 299.99715 * 8 6 4 12 12 N 1.46498 * 109.47349 * 119.99718 * 2 1 3 13 13 C 1.46502 * 119.99707 * 60.00303 * 12 2 1 14 14 C 1.34779 * 120.00348 * 239.99991 * 12 2 1 15 15 O 1.21503 * 119.99526 * 2.00585 * 14 12 2 16 16 C 1.48268 * 120.00206 * 181.99777 * 14 12 2 17 17 C 1.40259 * 119.24226 * 172.74386 * 16 14 12 18 18 C 1.36521 * 119.82377 * 179.97438 * 17 16 14 19 19 C 1.40736 * 118.25000 * 0.02562 * 18 17 16 20 20 C 1.40441 * 121.27129 * 179.97438 * 19 18 17 21 21 C 1.36098 * 119.66433 * 180.02562 * 20 19 18 22 22 C 1.39559 * 120.90787 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.47592 * 179.97438 * 22 21 20 24 24 C 1.36119 * 121.04953 * 359.92569 * 22 21 20 25 25 C 1.40788 * 119.72916 * 0.10118 * 24 22 21 26 26 N 1.31890 * 119.24337 * 352.72944 * 16 14 12 27 27 H 1.08997 * 109.46842 * 60.00486 * 1 2 3 28 28 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46852 * 300.00186 * 1 2 3 30 30 H 0.97000 * 120.00241 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.46536 * 263.74563 * 13 12 2 32 32 H 1.08995 * 109.47221 * 23.74809 * 13 12 2 33 33 H 1.09002 * 109.46606 * 143.75266 * 13 12 2 34 34 H 1.08004 * 120.09174 * 359.70806 * 17 16 14 35 35 H 1.08001 * 120.87818 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.16278 * 0.02562 * 20 19 18 37 37 H 1.08006 * 119.54420 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.13430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0080 9 1 1.8261 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0567 1.1378 1.9097 16 6 3.3240 -0.7467 3.2711 17 6 4.2502 -0.0980 4.1010 18 6 4.7462 -0.7415 5.1981 19 6 4.3032 -2.0517 5.4587 20 6 4.7723 -2.7725 6.5691 21 6 4.3223 -4.0378 6.7898 22 6 3.3999 -4.6313 5.9268 23 17 2.8514 -6.2477 6.2433 24 6 2.9228 -3.9626 4.8415 25 6 3.3648 -2.6519 4.5791 26 7 2.9142 -1.9747 3.5233 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.7089 1.1613 -3.4844 31 1 0.8014 -2.1451 2.0916 32 1 1.4214 -2.5684 0.4777 33 1 2.5075 -2.6093 1.8873 34 1 4.5734 0.9064 3.8703 35 1 5.4597 -0.2580 5.8488 36 1 5.4864 -2.3248 7.2443 37 1 4.6846 -4.5905 7.6440 38 1 2.2090 -4.4360 4.1836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084187718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:16 Heat of formation + Delta-G solvation = 15.283135 kcal Electronic energy + Delta-G solvation = -23600.408339 eV Core-core repulsion = 20047.768410 eV Total energy + Delta-G solvation = -3552.639929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20596 -40.58933 -38.45408 -37.30314 -37.08880 -35.05431 -34.42377 -32.12157 -31.19515 -30.78099 -27.72789 -27.34102 -26.28518 -24.79869 -23.31068 -23.16632 -20.82788 -19.26870 -18.75558 -18.42442 -18.04559 -17.34648 -16.70696 -16.49107 -16.31787 -15.79927 -15.49675 -15.35545 -14.94268 -14.51531 -14.40736 -14.30521 -13.99448 -13.76809 -13.52606 -13.43059 -13.00059 -12.77796 -12.76395 -12.73355 -12.60267 -12.24645 -12.16237 -12.11223 -12.01697 -11.52207 -11.35109 -11.16602 -10.55667 -10.18700 -9.84211 -9.39106 -9.34334 -8.16790 -6.33696 -0.92588 -0.52084 0.81823 0.99302 1.30674 1.41231 1.43361 1.51225 2.09555 2.17771 2.42862 2.93239 2.97430 3.11060 3.47855 3.61207 3.75812 3.82558 3.93352 4.08539 4.30016 4.59691 4.65319 4.71152 4.74874 4.77718 4.80750 4.86512 4.91612 5.02818 5.08345 5.19615 5.21111 5.41028 5.42413 5.51831 5.62575 5.64346 5.96816 6.11903 6.50700 6.70362 6.73434 7.17828 7.39035 8.87950 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003325 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.296171 B = 8418.361746 C = 9353.436465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.574 5.574 13 C 0.090 3.910 14 C 0.538 3.462 15 O -0.587 6.587 16 C 0.112 3.888 17 C -0.139 4.139 18 C -0.034 4.034 19 C -0.100 4.100 20 C -0.066 4.066 21 C -0.105 4.105 22 C -0.014 4.014 23 Cl -0.058 7.058 24 C -0.095 4.095 25 C 0.107 3.893 26 N -0.448 5.448 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.019 0.981 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.196 0.804 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -12.324 22.704 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.034 0.966 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.302 5.302 13 C -0.052 4.052 14 C 0.325 3.675 15 O -0.469 6.469 16 C -0.039 4.039 17 C -0.160 4.160 18 C -0.059 4.059 19 C -0.102 4.102 20 C -0.084 4.084 21 C -0.124 4.124 22 C -0.042 4.042 23 Cl -0.029 7.029 24 C -0.115 4.115 25 C -0.016 4.016 26 N -0.161 5.161 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.167 0.833 35 H 0.213 0.787 36 H 0.202 0.798 37 H 0.187 0.813 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.473 -12.238 21.935 26.206 hybrid contribution 0.256 0.230 -0.942 1.003 sum 7.728 -12.008 20.993 25.389 Atomic orbital electron populations 1.21867 0.96916 1.00058 1.00080 1.18692 0.91850 0.92431 0.81267 0.96620 1.21493 1.32322 1.13196 0.91089 0.92360 1.25725 0.94928 0.95610 1.01929 1.70004 1.37022 1.23719 1.24674 0.85483 0.78463 0.78926 0.78003 1.18861 1.20527 1.20154 1.48225 1.46634 1.13645 1.21662 1.22224 1.02071 0.80305 1.00593 1.18613 0.79561 0.86130 0.83228 1.90687 1.61727 1.17266 1.77204 1.21255 0.96440 0.91017 0.95223 1.21849 0.96581 1.02380 0.95203 1.21907 0.96895 0.92011 0.95081 1.19341 0.97582 0.96064 0.97226 1.21382 0.98762 0.93231 0.95043 1.21214 0.95631 0.95812 0.99700 1.20749 0.98911 0.87732 0.96847 1.98400 1.88813 1.20504 1.95139 1.20729 1.00882 0.92176 0.97667 1.19098 0.95940 0.94863 0.91717 1.68335 1.24421 1.06538 1.16825 0.90848 0.93742 0.96234 0.92432 0.92672 0.92287 0.87775 0.83327 0.78734 0.79797 0.81280 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 8.97 71.98 0.65 -6.03 16 2 C 0.26 14.26 2.63 44.25 0.12 14.37 16 3 H 0.02 1.01 6.90 -2.38 -0.02 1.00 16 4 C -0.54 -30.76 7.95 25.60 0.20 -30.56 16 5 H 0.06 3.24 7.44 -2.91 -0.02 3.22 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.57 -27.18 2.75 -829.72 -2.28 -29.46 16 13 C 0.09 3.52 8.22 127.77 1.05 4.57 16 14 C 0.54 24.74 7.66 86.91 0.67 25.40 16 15 O -0.59 -30.89 15.63 -3.72 -0.06 -30.94 16 16 C 0.11 3.96 6.63 42.30 0.28 4.24 16 17 C -0.14 -3.80 9.53 22.36 0.21 -3.58 16 18 C -0.03 -0.59 9.88 22.48 0.22 -0.37 16 19 C -0.10 -1.86 5.75 -21.21 -0.12 -1.98 16 20 C -0.07 -0.70 9.77 22.31 0.22 -0.48 16 21 C -0.11 -1.18 9.72 22.09 0.21 -0.96 16 22 C -0.01 -0.22 6.27 22.10 0.14 -0.09 16 23 Cl -0.06 -0.88 28.91 -2.72 -0.08 -0.96 16 24 C -0.10 -2.02 9.73 22.40 0.22 -1.80 16 25 C 0.11 2.69 6.61 40.47 0.27 2.96 16 26 N -0.45 -14.24 5.95 -177.79 -1.06 -15.29 16 27 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 28 H 0.04 2.09 7.67 -2.39 -0.02 2.07 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.38 7.12 -2.39 -0.02 2.36 16 33 H 0.10 3.76 5.27 -2.96 -0.02 3.74 16 34 H 0.15 4.06 7.62 -2.91 -0.02 4.04 16 35 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -72.70 334.97 4.66 -68.04 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.09 Total: 8.90 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.78 Total: 7.15 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -3.10 Total: -98.14 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.06 Total: -30.94 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -72.70 4.66 -68.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084187718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.319 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds