Wall clock time and date at job start Tue Mar 31 2020 12:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47209 * 2 1 4 4 C 1.46494 * 120.00248 * 263.20003 * 3 2 1 5 5 C 1.50696 * 109.47017 * 269.99698 * 4 3 2 6 6 H 1.08003 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00324 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00459 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46889 * 60.00095 * 9 7 5 11 11 H 1.48496 * 109.47345 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47165 * 300.00839 * 9 7 5 13 13 C 1.34776 * 119.99723 * 83.19591 * 3 2 1 14 14 O 1.21621 * 120.00119 * 183.44792 * 13 3 2 15 15 C 1.47351 * 119.99966 * 3.45397 * 13 3 2 16 16 C 1.36310 * 122.54968 * 173.43415 * 15 13 3 17 17 S 1.71021 * 108.98867 * 180.02562 * 16 15 13 18 18 C 1.75974 * 90.61854 * 0.02562 * 17 16 15 19 19 C 1.47903 * 125.22595 * 180.02562 * 18 17 16 20 20 C 1.39649 * 120.12465 * 359.74770 * 19 18 17 21 21 N 1.31947 * 119.85450 * 180.27681 * 20 19 18 22 22 C 1.32235 * 120.10590 * 359.97438 * 21 20 19 23 23 C 1.38452 * 120.24797 * 0.02562 * 22 21 20 24 24 N 1.31986 * 120.14879 * 359.97438 * 23 22 21 25 25 N 1.29776 * 109.54795 * 0.26029 * 18 17 16 26 26 H 1.08996 * 109.46865 * 299.99872 * 1 2 3 27 27 H 1.09001 * 109.47176 * 59.99618 * 1 2 3 28 28 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46904 * 240.00668 * 2 1 3 30 30 H 1.08993 * 109.47412 * 120.00204 * 2 1 3 31 31 H 1.09000 * 109.47337 * 30.00089 * 4 3 2 32 32 H 1.09002 * 109.47432 * 150.00045 * 4 3 2 33 33 H 0.96997 * 119.99974 * 180.02562 * 8 7 5 34 34 H 1.07997 * 125.50825 * 0.03841 * 16 15 13 35 35 H 1.08003 * 120.06735 * 0.24994 * 20 19 18 36 36 H 1.08006 * 119.87663 * 179.97438 * 22 21 20 37 37 H 1.08008 * 119.92762 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4042 2.0218 -1.2597 5 6 3.8666 1.7712 -1.5234 6 1 4.4502 1.1923 -0.8229 7 6 4.4595 2.2800 -2.6595 8 7 3.7487 2.9846 -3.5128 9 14 6.2720 1.9688 -2.9867 10 1 6.5142 0.5067 -3.0799 11 1 6.6631 2.6182 -4.2636 12 1 7.0797 2.5345 -1.8763 13 6 2.1126 2.0626 1.1590 14 8 2.4581 3.2287 1.1525 15 6 1.7973 1.3947 2.4340 16 6 1.9990 1.9902 3.6434 17 16 1.5186 0.9125 4.8814 18 6 1.0685 -0.2943 3.6824 19 6 0.5138 -1.6316 3.9847 20 6 0.3141 -2.0245 5.3098 21 7 -0.1759 -3.2208 5.5735 22 6 -0.4781 -4.0463 4.5857 23 6 -0.2819 -3.6613 3.2703 24 7 0.2077 -2.4669 2.9952 25 7 1.3028 0.1674 2.4924 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8116 1.6065 -2.0749 32 1 2.2261 3.0949 -1.1912 33 1 4.1657 3.3423 -4.3122 34 1 2.3976 2.9824 3.7954 35 1 0.5608 -1.3506 6.1170 36 1 -0.8787 -5.0249 4.8058 37 1 -0.5301 -4.3399 2.4675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:04 Heat of formation + Delta-G solvation = 80.278289 kcal Electronic energy + Delta-G solvation = -23639.158139 eV Core-core repulsion = 20123.673068 eV Total energy + Delta-G solvation = -3515.485070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40503 -40.26243 -37.99661 -35.26628 -34.71065 -32.92438 -32.65513 -29.95991 -29.88526 -27.52976 -26.37369 -25.05210 -24.51391 -22.76526 -22.50323 -20.68240 -19.35214 -17.85329 -17.52659 -17.38364 -16.83273 -16.38562 -15.95372 -15.51862 -15.17289 -14.83020 -14.65949 -14.13129 -13.74583 -13.63314 -13.28761 -13.09591 -13.02290 -12.25713 -12.06955 -11.94776 -11.74519 -11.68263 -11.43507 -11.14455 -10.85709 -10.68507 -10.50895 -10.32627 -10.13333 -9.70294 -9.65870 -9.52855 -9.41571 -9.03066 -8.66582 -8.39845 -7.57266 -6.00972 -4.05790 -0.26348 0.61714 0.90557 0.91835 1.38553 2.23639 3.31398 3.34555 3.37147 3.38229 3.41596 3.78925 3.87061 3.92587 4.03532 4.15677 4.47565 4.59121 4.80012 4.90793 5.00286 5.17999 5.21897 5.33167 5.67359 5.82837 5.90464 6.04166 6.15893 6.48841 6.62586 6.81211 6.89899 7.12039 7.27948 7.44807 7.47559 7.62118 7.95638 8.26372 8.44957 8.89037 9.06298 9.58779 11.07020 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.003589 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.966712 B = 7800.806657 C = 8483.358460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.103 3.897 3 N -0.573 5.573 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.575 3.425 14 O -0.538 6.538 15 C 0.024 3.976 16 C -0.203 4.203 17 S 0.183 5.817 18 C 0.058 3.942 19 C 0.157 3.843 20 C 0.068 3.932 21 N -0.430 5.430 22 C 0.050 3.950 23 C 0.063 3.937 24 N -0.398 5.398 25 N -0.375 5.375 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.196 0.804 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -13.147 19.174 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 N -0.302 5.302 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.357 3.643 14 O -0.417 6.417 15 C -0.113 4.113 16 C -0.345 4.345 17 S 0.439 5.561 18 C -0.218 4.218 19 C 0.015 3.985 20 C -0.094 4.094 21 N -0.144 5.144 22 C -0.110 4.110 23 C -0.099 4.099 24 N -0.114 5.114 25 N -0.090 5.090 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.213 0.787 35 H 0.186 0.814 36 H 0.192 0.808 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.696 -12.676 19.554 25.240 hybrid contribution 1.221 0.250 -1.183 1.718 sum -8.475 -12.426 18.371 23.743 Atomic orbital electron populations 1.21959 0.96714 1.01051 1.00636 1.21834 0.93796 0.83040 1.03438 1.48159 1.60520 1.13730 1.07798 1.19360 0.95263 0.94518 0.78263 1.21398 0.94808 1.33840 1.06504 0.92494 1.24926 0.98308 0.94920 0.95877 1.69926 1.36261 1.35242 1.11924 0.86551 0.85002 0.78355 0.77470 1.20231 1.21152 1.20202 1.17037 0.79319 0.85838 0.82059 1.90781 1.48965 1.15739 1.86178 1.21096 1.03823 0.90145 0.96218 1.27001 1.05750 1.06581 0.95210 1.83491 1.55799 1.06395 1.10434 1.25402 1.07399 0.97831 0.91181 1.19509 0.97056 0.91184 0.90738 1.23608 0.96236 0.94307 0.95290 1.68470 1.07680 1.02471 1.35784 1.23951 0.96737 1.00296 0.90055 1.23952 0.94993 0.93283 0.97660 1.68553 1.06023 1.02240 1.34544 1.67403 1.10124 1.10174 1.21325 0.93388 0.93641 0.92382 0.91090 0.88241 0.94671 0.93718 0.92663 0.78740 0.81360 0.80799 0.80517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.64 37.16 0.36 -2.10 16 2 C 0.10 1.99 5.70 -4.04 -0.02 1.96 16 3 N -0.57 -13.29 2.47 -176.36 -0.44 -13.72 16 4 C 0.24 6.69 5.16 -5.20 -0.03 6.66 16 5 C -0.53 -15.40 9.39 -34.44 -0.32 -15.73 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.57 13.01 7.59 -12.55 -0.10 12.91 16 14 O -0.54 -13.92 16.25 5.26 0.09 -13.83 16 15 C 0.02 0.43 6.35 -84.59 -0.54 -0.11 16 16 C -0.20 -2.83 10.63 30.04 0.32 -2.51 16 17 S 0.18 1.79 22.11 -107.50 -2.38 -0.59 16 18 C 0.06 0.73 7.39 -14.46 -0.11 0.63 16 19 C 0.16 1.76 6.75 -82.85 -0.56 1.20 16 20 C 0.07 0.61 10.78 -16.98 -0.18 0.42 16 21 N -0.43 -3.79 10.49 -12.73 -0.13 -3.92 16 22 C 0.05 0.34 11.22 -17.30 -0.19 0.14 16 23 C 0.06 0.48 11.22 -17.41 -0.20 0.29 16 24 N -0.40 -4.59 10.41 -9.65 -0.10 -4.69 16 25 N -0.37 -5.96 5.12 -7.89 -0.04 -6.01 16 26 H 0.05 0.83 6.88 -51.93 -0.36 0.47 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.40 8.02 -51.93 -0.42 0.99 16 30 H 0.10 1.87 5.26 -51.93 -0.27 1.60 16 31 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.04 1.35 7.38 -51.93 -0.38 0.97 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.20 2.51 8.02 -52.49 -0.42 2.09 16 35 H 0.17 1.08 7.28 -52.48 -0.38 0.69 16 36 H 0.17 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -35.69 337.72 -7.75 -43.44 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.89 Total: -2.19 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.66 Total: 5.48 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.03 Total: -54.63 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.69 -7.75 -43.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.714 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds