Wall clock time and date at job start Tue Mar 31 2020 12:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47209 * 2 1 4 4 C 1.46494 * 120.00248 * 263.20003 * 3 2 1 5 5 C 1.50696 * 109.47017 * 269.99698 * 4 3 2 6 6 H 1.08003 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00324 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00459 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46889 * 60.00095 * 9 7 5 11 11 H 1.48496 * 109.47345 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47165 * 300.00839 * 9 7 5 13 13 C 1.34776 * 119.99723 * 83.19591 * 3 2 1 14 14 O 1.21621 * 120.00119 * 183.44792 * 13 3 2 15 15 C 1.47351 * 119.99966 * 3.45397 * 13 3 2 16 16 C 1.36310 * 122.54968 * 173.43415 * 15 13 3 17 17 S 1.71021 * 108.98867 * 180.02562 * 16 15 13 18 18 C 1.75974 * 90.61854 * 0.02562 * 17 16 15 19 19 C 1.47903 * 125.22595 * 180.02562 * 18 17 16 20 20 C 1.39649 * 120.12465 * 359.74770 * 19 18 17 21 21 N 1.31947 * 119.85450 * 180.27681 * 20 19 18 22 22 C 1.32235 * 120.10590 * 359.97438 * 21 20 19 23 23 C 1.38452 * 120.24797 * 0.02562 * 22 21 20 24 24 N 1.31986 * 120.14879 * 359.97438 * 23 22 21 25 25 N 1.29776 * 109.54795 * 0.26029 * 18 17 16 26 26 H 1.08996 * 109.46865 * 299.99872 * 1 2 3 27 27 H 1.09001 * 109.47176 * 59.99618 * 1 2 3 28 28 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46904 * 240.00668 * 2 1 3 30 30 H 1.08993 * 109.47412 * 120.00204 * 2 1 3 31 31 H 1.09000 * 109.47337 * 30.00089 * 4 3 2 32 32 H 1.09002 * 109.47432 * 150.00045 * 4 3 2 33 33 H 0.96997 * 119.99974 * 180.02562 * 8 7 5 34 34 H 1.07997 * 125.50825 * 0.03841 * 16 15 13 35 35 H 1.08003 * 120.06735 * 0.24994 * 20 19 18 36 36 H 1.08006 * 119.87663 * 179.97438 * 22 21 20 37 37 H 1.08008 * 119.92762 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4042 2.0218 -1.2597 5 6 3.8666 1.7712 -1.5234 6 1 4.4502 1.1923 -0.8229 7 6 4.4595 2.2800 -2.6595 8 7 3.7487 2.9846 -3.5128 9 14 6.2720 1.9688 -2.9867 10 1 6.5142 0.5067 -3.0799 11 1 6.6631 2.6182 -4.2636 12 1 7.0797 2.5345 -1.8763 13 6 2.1126 2.0626 1.1590 14 8 2.4581 3.2287 1.1525 15 6 1.7973 1.3947 2.4340 16 6 1.9990 1.9902 3.6434 17 16 1.5186 0.9125 4.8814 18 6 1.0685 -0.2943 3.6824 19 6 0.5138 -1.6316 3.9847 20 6 0.3141 -2.0245 5.3098 21 7 -0.1759 -3.2208 5.5735 22 6 -0.4781 -4.0463 4.5857 23 6 -0.2819 -3.6613 3.2703 24 7 0.2077 -2.4669 2.9952 25 7 1.3028 0.1674 2.4924 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8116 1.6065 -2.0749 32 1 2.2261 3.0949 -1.1912 33 1 4.1657 3.3423 -4.3122 34 1 2.3976 2.9824 3.7954 35 1 0.5608 -1.3506 6.1170 36 1 -0.8787 -5.0249 4.8058 37 1 -0.5301 -4.3399 2.4675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084408662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:04 Heat of formation + Delta-G solvation = 54.985188 kcal Electronic energy + Delta-G solvation = -23640.254930 eV Core-core repulsion = 20123.673068 eV Total energy + Delta-G solvation = -3516.581861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10788 -41.55029 -39.52200 -37.07914 -35.39033 -34.90350 -33.61583 -31.65532 -30.95990 -29.37482 -27.43794 -26.18729 -25.48379 -24.51913 -23.91440 -21.94618 -20.45211 -19.29322 -18.61841 -18.27794 -18.10001 -17.73155 -17.34882 -16.86841 -16.60118 -16.21120 -15.94636 -15.41928 -15.03183 -14.84338 -14.62657 -14.46146 -14.22065 -13.83715 -13.64847 -13.24067 -13.14859 -13.06546 -12.65308 -12.60510 -12.55117 -12.39211 -12.18527 -12.02279 -11.78172 -11.16716 -11.10211 -10.67454 -10.59665 -10.38810 -10.14060 -9.66949 -9.38672 -8.24841 -6.40816 -1.08431 -0.13321 -0.00676 0.12025 0.35006 1.06571 1.34769 1.39370 1.47240 2.19669 2.32817 2.39862 2.55972 2.76391 3.03870 3.19718 3.28095 3.45014 3.66035 3.96132 4.07262 4.16979 4.27191 4.37418 4.51164 4.54012 4.56767 4.72276 4.94360 5.00148 5.14848 5.18949 5.33010 5.43985 5.56060 5.80953 6.01420 6.17470 6.35910 6.64086 6.69529 6.75018 7.18308 7.34559 8.82437 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.003589 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.966712 B = 7800.806657 C = 8483.358460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.106 3.894 3 N -0.583 5.583 4 C 0.262 3.738 5 C -0.548 4.548 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.276 1.276 13 C 0.567 3.433 14 O -0.588 6.588 15 C -0.007 4.007 16 C -0.217 4.217 17 S 0.315 5.685 18 C 0.048 3.952 19 C 0.128 3.872 20 C 0.076 3.924 21 N -0.448 5.448 22 C 0.069 3.931 23 C 0.060 3.940 24 N -0.434 5.434 25 N -0.406 5.406 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.023 0.977 32 H 0.003 0.997 33 H 0.269 0.731 34 H 0.199 0.801 35 H 0.191 0.809 36 H 0.215 0.785 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -15.942 21.947 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 N -0.312 5.312 4 C 0.141 3.859 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.201 1.201 13 C 0.353 3.647 14 O -0.470 6.470 15 C -0.144 4.144 16 C -0.360 4.360 17 S 0.573 5.427 18 C -0.228 4.228 19 C -0.013 4.013 20 C -0.086 4.086 21 N -0.161 5.161 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.150 5.150 25 N -0.122 5.122 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.216 0.784 35 H 0.207 0.793 36 H 0.231 0.769 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.823 -15.493 22.367 28.928 hybrid contribution 1.123 0.971 -1.855 2.376 sum -8.700 -14.522 20.512 26.596 Atomic orbital electron populations 1.21797 0.94729 1.02384 0.99751 1.21987 0.95328 0.80937 1.03406 1.48162 1.61027 1.15074 1.06908 1.18820 0.94694 0.92288 0.80129 1.21623 0.95682 1.34393 1.06931 0.93146 1.25883 1.03457 0.94255 0.95357 1.70049 1.38439 1.35723 1.12364 0.85420 0.78521 0.79028 0.77556 1.18643 1.19871 1.20095 1.17735 0.77971 0.85466 0.83539 1.90719 1.51120 1.17838 1.87283 1.20287 1.07851 0.91748 0.94512 1.27273 1.04770 1.07744 0.96193 1.82970 1.52035 1.01932 1.05731 1.25824 1.06225 0.99102 0.91605 1.19516 0.99207 0.90848 0.91705 1.23842 0.95270 0.94734 0.94717 1.68584 1.08400 1.02680 1.36474 1.24619 0.94221 1.01131 0.89240 1.24509 0.94062 0.92453 0.99206 1.68459 1.07054 1.03791 1.35732 1.67203 1.11714 1.09604 1.23672 0.93742 0.94906 0.89777 0.92228 0.87051 0.95930 0.97931 0.92202 0.78429 0.79267 0.76878 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.64 71.98 0.69 -3.75 16 2 C 0.11 4.27 5.70 86.38 0.49 4.76 16 3 N -0.58 -28.85 2.47 -830.14 -2.05 -30.90 16 4 C 0.26 15.35 5.16 85.63 0.44 15.79 16 5 C -0.55 -33.55 9.39 25.60 0.24 -33.31 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.58 5.46 84.66 0.46 1.05 16 8 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 9 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.57 27.33 7.59 86.64 0.66 27.99 16 14 O -0.59 -32.66 16.25 -4.10 -0.07 -32.73 16 15 C -0.01 -0.25 6.35 41.00 0.26 0.01 16 16 C -0.22 -5.94 10.63 67.37 0.72 -5.22 16 17 S 0.32 5.27 22.11 -56.49 -1.25 4.02 16 18 C 0.05 1.15 7.39 87.56 0.65 1.80 16 19 C 0.13 2.59 6.75 41.86 0.28 2.87 16 20 C 0.08 1.11 10.78 85.02 0.92 2.03 16 21 N -0.45 -6.28 10.49 -194.19 -2.04 -8.32 16 22 C 0.07 0.65 11.22 84.68 0.95 1.60 16 23 C 0.06 0.74 11.22 84.72 0.95 1.69 16 24 N -0.43 -9.18 10.41 -184.45 -1.92 -11.10 16 25 N -0.41 -12.91 5.12 -178.87 -0.92 -13.83 16 26 H 0.04 1.57 6.88 -2.39 -0.02 1.55 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 30 H 0.11 4.31 5.26 -2.39 -0.01 4.30 16 31 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.00 0.17 7.38 -2.39 -0.02 0.15 16 33 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.20 5.13 8.02 -2.91 -0.02 5.11 16 35 H 0.19 1.66 7.28 -2.91 -0.02 1.64 16 36 H 0.21 0.18 8.06 -2.91 -0.02 0.15 16 37 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -83.53 337.72 2.89 -80.64 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.11 Total: 4.05 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.71 Total: 17.29 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -6.64 Total: -121.68 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.07 Total: -32.73 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.25 Total: 4.02 kcal Total: -83.53 2.89 -80.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.623 kcal (2) G-P(sol) polarization free energy of solvation -83.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds