Wall clock time and date at job start Tue Mar 31 2020 12:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99647 * 2 1 4 4 C 1.50700 * 109.46733 * 269.99989 * 3 2 1 5 5 H 1.07999 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99763 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99952 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46867 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46563 * 120.00088 * 8 6 4 11 11 H 1.48496 * 109.47471 * 240.00029 * 8 6 4 12 12 C 1.34772 * 119.99984 * 179.97438 * 2 1 3 13 13 O 1.21595 * 119.99973 * 179.97438 * 12 2 1 14 14 N 1.34782 * 120.00314 * 359.97438 * 12 2 1 15 15 C 1.39934 * 120.00184 * 184.57149 * 14 12 2 16 16 C 1.38942 * 119.95186 * 144.88909 * 15 14 12 17 17 C 1.37894 * 120.05287 * 180.02562 * 16 15 14 18 18 C 1.39364 * 119.95312 * 0.02562 * 17 16 15 19 19 C 1.48421 * 120.05193 * 179.97438 * 18 17 16 20 20 C 1.36454 * 123.94876 * 179.97438 * 19 18 17 21 21 S 1.72108 * 104.12985 * 180.28330 * 20 19 18 22 22 N 1.56465 * 96.03584 * 359.63087 * 21 20 19 23 23 N 1.27503 * 109.52997 * 0.38089 * 22 21 20 24 24 C 1.39358 * 119.89313 * 0.25418 * 18 17 16 25 25 C 1.37907 * 119.95410 * 359.46748 * 24 18 17 26 26 H 1.09004 * 109.47084 * 269.99619 * 1 2 3 27 27 H 1.09002 * 109.47509 * 30.00069 * 1 2 3 28 28 H 1.09003 * 109.46958 * 150.00564 * 1 2 3 29 29 H 1.08995 * 109.47195 * 29.99886 * 3 2 1 30 30 H 1.08997 * 109.46884 * 150.00152 * 3 2 1 31 31 H 0.97000 * 119.99467 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99769 * 4.58127 * 14 12 2 33 33 H 1.08007 * 119.96872 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.02742 * 180.02562 * 17 16 15 35 35 H 1.07994 * 127.94178 * 0.02562 * 20 19 18 36 36 H 1.08000 * 120.01799 * 179.72662 * 24 18 17 37 37 H 1.07995 * 119.97505 * 180.27891 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7037 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5549 3.6171 -0.6732 8 14 3.4386 3.4163 -3.4341 9 1 2.8605 2.4163 -4.3674 10 1 2.8015 4.7372 -3.6677 11 1 4.9012 3.5241 -3.6672 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3344 0.0016 15 6 2.1614 -3.5443 0.0987 16 6 1.6076 -4.6092 0.7985 17 6 2.2923 -5.8022 0.8959 18 6 3.5409 -5.9392 0.2924 19 6 4.2800 -7.2221 0.3964 20 6 5.5048 -7.4434 -0.1629 21 16 5.8717 -9.0710 0.2595 22 7 4.5545 -9.3336 1.0621 23 7 3.8275 -8.2863 1.0426 24 6 4.0970 -4.8678 -0.4040 25 6 3.4062 -3.6785 -0.5038 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0316 4.4430 -0.8506 32 1 0.4973 -2.3358 -0.0652 33 1 0.6404 -4.5022 1.2671 34 1 1.8612 -6.6299 1.4397 35 1 6.1044 -6.7566 -0.7417 36 1 5.0665 -4.9704 -0.8688 37 1 3.8348 -2.8495 -1.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085576464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:42 Heat of formation + Delta-G solvation = 83.381350 kcal Electronic energy + Delta-G solvation = -22811.854051 eV Core-core repulsion = 19296.503540 eV Total energy + Delta-G solvation = -3515.350511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15883 -40.24014 -38.44064 -35.21277 -34.62494 -32.83964 -32.29315 -30.98555 -29.03375 -27.70268 -27.13891 -25.85707 -23.72844 -22.85265 -22.36776 -21.00957 -19.59230 -18.83082 -17.90356 -17.04165 -16.58838 -16.39554 -15.92566 -15.41631 -15.14942 -14.97890 -14.48260 -14.07864 -13.82176 -13.41119 -13.34432 -12.95421 -12.88305 -12.57750 -12.28145 -12.19772 -11.98411 -11.86535 -11.26914 -11.24200 -10.93490 -10.77446 -10.63881 -10.39493 -10.19929 -10.12116 -9.72885 -9.65812 -9.33416 -8.88915 -8.48084 -7.97120 -7.62187 -6.08589 -4.13549 -0.08186 0.84913 0.95036 1.41492 1.45921 2.32443 3.09770 3.26789 3.34604 3.38696 3.64522 3.72635 4.00496 4.33250 4.46112 4.50240 4.71740 4.92336 5.02439 5.16562 5.25631 5.39097 5.41400 5.57173 5.67628 5.79529 6.02983 6.08792 6.26060 6.38358 6.48282 6.64031 6.75839 7.14279 7.28802 7.42729 7.50416 7.58953 7.88796 8.17643 8.48109 8.87099 9.13865 9.51952 10.99354 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.183772 B =11172.962078 C =12055.991932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.697 3.303 13 O -0.567 6.567 14 N -0.697 5.697 15 C 0.199 3.801 16 C -0.159 4.159 17 C -0.062 4.062 18 C -0.059 4.059 19 C 0.086 3.914 20 C -0.295 4.295 21 S 0.421 5.579 22 N -0.288 5.288 23 N -0.233 5.233 24 C -0.072 4.072 25 C -0.123 4.123 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.200 0.800 36 H 0.126 0.874 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -21.475 1.190 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.346 5.346 3 C 0.139 3.861 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.399 3.601 13 O -0.443 6.443 14 N -0.346 5.346 15 C 0.101 3.899 16 C -0.180 4.180 17 C -0.082 4.082 18 C -0.064 4.064 19 C -0.057 4.057 20 C -0.451 4.451 21 S 0.557 5.443 22 N -0.267 5.267 23 N -0.101 5.101 24 C -0.092 4.092 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.217 0.783 36 H 0.144 0.856 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.317 -22.976 1.953 23.061 hybrid contribution -0.592 2.021 -1.441 2.552 sum -0.909 -20.954 0.513 20.980 Atomic orbital electron populations 1.21613 0.81560 1.02442 1.00520 1.47523 1.05815 1.06318 1.74915 1.19283 0.92422 0.76769 0.97591 1.21473 1.36526 1.06291 0.92307 0.92412 1.24935 0.95332 0.96378 0.97462 1.69939 1.38333 1.14360 1.30677 0.86438 0.78105 0.78307 0.84526 1.19831 1.20964 1.20846 1.15931 0.85589 0.80048 0.78551 1.90889 1.11279 1.85444 1.56647 1.43065 1.10188 1.03765 1.77565 1.17753 0.93055 0.84952 0.94133 1.20819 1.02045 0.93395 1.01747 1.20925 0.93041 0.96996 0.97205 1.17589 0.95175 0.89406 1.04207 1.20852 0.92774 0.94906 0.97138 1.28275 1.01705 1.04675 1.10419 1.81394 1.23985 1.03127 1.35774 1.78785 1.05301 1.21652 1.21005 1.71350 1.25479 0.95665 1.17642 1.20977 0.99320 0.91512 0.97431 1.21397 0.94853 0.97954 1.00117 0.93521 0.90167 0.93135 0.94683 0.93592 0.92710 0.75960 0.85357 0.84868 0.78311 0.85577 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.85 0.61 1.83 16 2 N -0.61 -12.51 2.86 -188.74 -0.54 -13.05 16 3 C 0.26 6.58 5.16 -5.19 -0.03 6.55 16 4 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.70 14.23 8.12 -86.92 -0.71 13.53 16 13 O -0.57 -13.81 13.35 5.28 0.07 -13.74 16 14 N -0.70 -10.68 5.21 -14.19 -0.07 -10.76 16 15 C 0.20 2.93 6.30 -83.64 -0.53 2.40 16 16 C -0.16 -1.92 9.95 -39.45 -0.39 -2.32 16 17 C -0.06 -0.75 9.65 -39.29 -0.38 -1.13 16 18 C -0.06 -0.73 5.88 -104.87 -0.62 -1.35 16 19 C 0.09 1.00 6.76 -84.04 -0.57 0.43 16 20 C -0.29 -2.55 10.75 30.09 0.32 -2.23 16 21 S 0.42 3.23 23.39 -107.50 -2.51 0.71 16 22 N -0.29 -3.34 12.52 60.35 0.76 -2.58 16 23 N -0.23 -2.99 11.16 32.44 0.36 -2.63 16 24 C -0.07 -0.92 9.51 -39.29 -0.37 -1.29 16 25 C -0.12 -1.90 8.68 -39.44 -0.34 -2.24 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.40 4.79 6.52 -40.82 -0.27 4.53 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.47 7.74 -52.48 -0.41 1.06 16 35 H 0.20 1.17 7.16 -52.49 -0.38 0.80 16 36 H 0.13 1.27 6.83 -52.49 -0.36 0.91 16 37 H 0.15 2.75 6.21 -52.49 -0.33 2.42 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -34.10 335.11 -8.26 -42.36 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.67 Total: 2.65 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.42 Total: 0.92 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 1.24 Total: -54.38 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.07 Total: -13.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.51 Total: 0.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.10 -8.26 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085576464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.740 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds