Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99647 * 2 1 4 4 C 1.50700 * 109.46733 * 269.99989 * 3 2 1 5 5 H 1.07999 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99763 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99952 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46867 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46563 * 120.00088 * 8 6 4 11 11 H 1.48496 * 109.47471 * 240.00029 * 8 6 4 12 12 C 1.34772 * 119.99984 * 179.97438 * 2 1 3 13 13 O 1.21595 * 119.99973 * 179.97438 * 12 2 1 14 14 N 1.34782 * 120.00314 * 359.97438 * 12 2 1 15 15 C 1.39934 * 120.00184 * 184.57149 * 14 12 2 16 16 C 1.38942 * 119.95186 * 144.88909 * 15 14 12 17 17 C 1.37894 * 120.05287 * 180.02562 * 16 15 14 18 18 C 1.39364 * 119.95312 * 0.02562 * 17 16 15 19 19 C 1.48421 * 120.05193 * 179.97438 * 18 17 16 20 20 C 1.36454 * 123.94876 * 179.97438 * 19 18 17 21 21 S 1.72108 * 104.12985 * 180.28330 * 20 19 18 22 22 N 1.56465 * 96.03584 * 359.63087 * 21 20 19 23 23 N 1.27503 * 109.52997 * 0.38089 * 22 21 20 24 24 C 1.39358 * 119.89313 * 0.25418 * 18 17 16 25 25 C 1.37907 * 119.95410 * 359.46748 * 24 18 17 26 26 H 1.09004 * 109.47084 * 269.99619 * 1 2 3 27 27 H 1.09002 * 109.47509 * 30.00069 * 1 2 3 28 28 H 1.09003 * 109.46958 * 150.00564 * 1 2 3 29 29 H 1.08995 * 109.47195 * 29.99886 * 3 2 1 30 30 H 1.08997 * 109.46884 * 150.00152 * 3 2 1 31 31 H 0.97000 * 119.99467 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99769 * 4.58127 * 14 12 2 33 33 H 1.08007 * 119.96872 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.02742 * 180.02562 * 17 16 15 35 35 H 1.07994 * 127.94178 * 0.02562 * 20 19 18 36 36 H 1.08000 * 120.01799 * 179.72662 * 24 18 17 37 37 H 1.07995 * 119.97505 * 180.27891 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7037 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5549 3.6171 -0.6732 8 14 3.4386 3.4163 -3.4341 9 1 2.8605 2.4163 -4.3674 10 1 2.8015 4.7372 -3.6677 11 1 4.9012 3.5241 -3.6672 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3344 0.0016 15 6 2.1614 -3.5443 0.0987 16 6 1.6076 -4.6092 0.7985 17 6 2.2923 -5.8022 0.8959 18 6 3.5409 -5.9392 0.2924 19 6 4.2800 -7.2221 0.3964 20 6 5.5048 -7.4434 -0.1629 21 16 5.8717 -9.0710 0.2595 22 7 4.5545 -9.3336 1.0621 23 7 3.8275 -8.2863 1.0426 24 6 4.0970 -4.8678 -0.4040 25 6 3.4062 -3.6785 -0.5038 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0316 4.4430 -0.8506 32 1 0.4973 -2.3358 -0.0652 33 1 0.6404 -4.5022 1.2671 34 1 1.8612 -6.6299 1.4397 35 1 6.1044 -6.7566 -0.7417 36 1 5.0665 -4.9704 -0.8688 37 1 3.8348 -2.8495 -1.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085576464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = 60.684754 kcal Electronic energy + Delta-G solvation = -22812.838249 eV Core-core repulsion = 19296.503540 eV Total energy + Delta-G solvation = -3516.334710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.01338 -41.56331 -39.63513 -36.76662 -36.02855 -34.69736 -33.41523 -31.99818 -30.32349 -29.27580 -27.98118 -27.33589 -25.33837 -23.84601 -23.75661 -21.89704 -21.01377 -19.73426 -19.21509 -18.65398 -18.33891 -17.34215 -16.78103 -16.72266 -16.62000 -16.18099 -15.98279 -15.44695 -14.93511 -14.77834 -14.56475 -14.28256 -13.98562 -13.75816 -13.73409 -13.47573 -13.17816 -13.00868 -12.80767 -12.77399 -12.52267 -12.27572 -12.18317 -11.81526 -11.67673 -11.15653 -11.02038 -10.83839 -10.66631 -10.62906 -9.92320 -9.52183 -8.86046 -8.20655 -6.35499 -0.81082 -0.03260 0.17247 0.44808 0.70232 1.37338 1.38603 1.40441 1.51661 1.72894 2.18615 2.40274 2.89852 2.90978 3.04159 3.09801 3.68058 3.99403 4.00153 4.04992 4.28437 4.33893 4.46948 4.56034 4.62427 4.68195 4.83599 4.97269 5.07854 5.21328 5.24403 5.37851 5.48168 5.52226 5.57475 5.79218 6.01624 6.06603 6.07948 6.72649 6.73491 7.03570 7.31558 7.61275 8.85940 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.183772 B =11172.962078 C =12055.991932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.620 5.620 3 C 0.275 3.725 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.693 3.307 13 O -0.616 6.616 14 N -0.676 5.676 15 C 0.170 3.830 16 C -0.142 4.142 17 C -0.067 4.067 18 C -0.053 4.053 19 C 0.059 3.941 20 C -0.290 4.290 21 S 0.511 5.489 22 N -0.332 5.332 23 N -0.262 5.262 24 C -0.071 4.071 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.421 0.579 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.227 0.773 36 H 0.149 0.851 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -23.424 0.299 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.153 3.847 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.395 3.605 13 O -0.496 6.496 14 N -0.327 5.327 15 C 0.074 3.926 16 C -0.162 4.162 17 C -0.087 4.087 18 C -0.058 4.058 19 C -0.084 4.084 20 C -0.446 4.446 21 S 0.646 5.354 22 N -0.312 5.312 23 N -0.129 5.129 24 C -0.091 4.091 25 C -0.165 4.165 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.261 0.739 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.243 0.757 36 H 0.167 0.833 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.807 -24.984 1.073 25.020 hybrid contribution -0.330 2.425 -1.145 2.702 sum -1.136 -22.559 -0.072 22.588 Atomic orbital electron populations 1.21914 0.77892 1.03989 1.02722 1.47376 1.08023 1.04865 1.75155 1.18724 0.90984 0.78911 0.96076 1.21723 1.36661 1.06427 0.93039 0.92934 1.25831 0.94963 0.96461 1.01836 1.70053 1.38980 1.14858 1.32910 0.85374 0.77848 0.78345 0.79255 1.19207 1.19512 1.20792 1.16099 0.85137 0.81108 0.78197 1.90854 1.13679 1.86384 1.58700 1.42653 1.10815 1.02414 1.76781 1.17953 0.93431 0.85250 0.95962 1.21020 1.02830 0.92130 1.00237 1.21164 0.93080 0.97288 0.97123 1.17748 0.95275 0.89701 1.03039 1.20837 0.94055 0.94668 0.98861 1.28747 1.00795 1.06053 1.08959 1.81072 1.20671 1.01044 1.32601 1.78474 1.07463 1.22033 1.23195 1.71364 1.26715 0.96084 1.18705 1.21098 1.00040 0.90560 0.97429 1.21248 0.95913 0.98101 1.01238 0.90918 0.90756 0.89494 0.95254 0.98108 0.92399 0.73870 0.82403 0.83651 0.75656 0.83322 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.24 127.77 1.31 3.47 16 2 N -0.62 -25.84 2.86 -869.29 -2.48 -28.32 16 3 C 0.27 14.59 5.16 85.63 0.44 15.03 16 4 C -0.54 -30.63 9.39 25.60 0.24 -30.39 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.46 5.46 84.66 0.46 0.92 16 7 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 8 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.69 29.04 8.12 179.05 1.45 30.50 16 13 O -0.62 -31.75 13.35 -4.02 -0.05 -31.80 16 14 N -0.68 -20.41 5.21 -317.06 -1.65 -22.06 16 15 C 0.17 4.97 6.30 38.18 0.24 5.21 16 16 C -0.14 -3.18 9.95 22.36 0.22 -2.96 16 17 C -0.07 -1.51 9.65 22.46 0.22 -1.30 16 18 C -0.05 -1.25 5.88 -20.02 -0.12 -1.37 16 19 C 0.06 1.28 6.76 41.35 0.28 1.56 16 20 C -0.29 -4.22 10.75 67.40 0.72 -3.50 16 21 S 0.51 6.38 23.39 -56.49 -1.32 5.06 16 22 N -0.33 -7.16 12.52 37.02 0.46 -6.70 16 23 N -0.26 -6.37 11.16 -51.27 -0.57 -6.95 16 24 C -0.07 -1.78 9.51 22.46 0.21 -1.57 16 25 C -0.14 -4.59 8.68 22.36 0.19 -4.39 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 28 H 0.09 1.78 6.30 -2.39 -0.02 1.76 16 29 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 30 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.42 9.18 6.52 -92.71 -0.60 8.58 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.15 2.95 7.74 -2.91 -0.02 2.93 16 35 H 0.23 1.86 7.16 -2.91 -0.02 1.84 16 36 H 0.15 2.82 6.83 -2.91 -0.02 2.80 16 37 H 0.12 4.56 6.21 -2.91 -0.02 4.55 16 Total: -1.00 -78.37 335.11 3.10 -75.27 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.53 Total: 13.11 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.88 Total: 11.21 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -3.96 Total: -119.23 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.05 Total: -31.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.32 Total: 5.06 kcal Total: -78.37 3.10 -75.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085576464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.950 kcal (2) G-P(sol) polarization free energy of solvation -78.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds