Wall clock time and date at job start Tue Mar 31 2020 11:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21498 * 119.99765 * 359.97438 * 14 13 3 16 16 C 1.48284 * 120.00336 * 179.97438 * 14 13 3 17 17 C 1.40183 * 119.23321 * 179.97438 * 16 14 13 18 18 C 1.36687 * 119.80631 * 179.97438 * 17 16 14 19 19 Cl 1.73604 * 120.89565 * 180.02562 * 18 17 16 20 20 C 1.40896 * 118.21195 * 0.02562 * 18 17 16 21 21 C 1.40379 * 121.28424 * 179.97438 * 20 18 17 22 22 C 1.36149 * 119.65343 * 179.97438 * 21 20 18 23 23 C 1.39423 * 120.90513 * 0.03878 * 22 21 20 24 24 C 1.36007 * 121.07509 * 359.97438 * 23 22 21 25 25 C 1.40814 * 119.73604 * 359.97438 * 24 23 22 26 26 N 1.31912 * 119.23034 * 359.72516 * 16 14 13 27 27 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 29 29 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 31 31 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 34 34 H 1.08002 * 120.10205 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.17321 * 0.02562 * 21 20 18 36 36 H 1.07989 * 119.54927 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.46101 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.13181 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3407 2.6325 0.4326 16 6 0.0427 3.3268 2.6343 17 6 -1.2272 3.9117 2.7363 18 6 -1.6013 4.5250 3.8992 19 17 -3.1672 5.2578 4.0567 20 6 -0.6818 4.5465 4.9666 21 6 -0.9985 5.1591 6.1893 22 6 -0.0850 5.1599 7.1988 23 6 1.1633 4.5608 7.0355 24 6 1.5050 3.9581 5.8651 25 6 0.5873 3.9352 4.7974 26 7 0.8949 3.3477 3.6410 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8295 -0.0694 -2.9455 33 1 2.2720 2.1230 1.9978 34 1 -1.9080 3.8778 1.8986 35 1 -1.9621 5.6265 6.3287 36 1 -0.3306 5.6313 8.1388 37 1 1.8701 4.5747 7.8520 38 1 2.4761 3.4983 5.7554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109596527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:50 Heat of formation + Delta-G solvation = -9.911297 kcal Electronic energy + Delta-G solvation = -23492.949672 eV Core-core repulsion = 19939.217230 eV Total energy + Delta-G solvation = -3553.732442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19610 -40.61607 -38.20749 -37.90341 -36.97147 -34.58014 -34.13767 -32.92832 -31.77270 -31.08357 -29.01159 -26.42474 -25.11733 -24.68124 -23.19765 -22.49602 -21.27449 -19.82417 -19.10855 -18.59385 -18.02316 -17.20895 -16.61047 -16.51548 -16.17117 -15.77591 -15.68704 -15.53769 -15.08266 -14.85348 -14.60087 -14.43632 -13.95324 -13.58828 -13.50850 -13.19432 -12.90463 -12.76709 -12.75011 -12.70423 -12.67513 -12.19963 -12.13976 -12.07522 -11.61869 -11.31842 -11.24109 -11.06111 -10.72428 -10.54225 -10.01728 -9.70286 -9.33646 -8.16662 -6.33719 -1.04327 -0.54875 0.63410 0.74615 1.29553 1.44546 1.45653 1.57795 2.20423 2.23216 2.45657 2.93205 2.97254 3.12887 3.39840 3.45264 3.66345 4.00445 4.06927 4.20980 4.28992 4.41119 4.48324 4.52185 4.55334 4.73499 4.90078 4.95300 5.04644 5.18334 5.23448 5.28556 5.40026 5.41088 5.49765 5.58707 5.74312 5.77663 5.87172 6.14002 6.43397 6.71685 6.88101 7.26732 7.42721 8.89049 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003477 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.944201 B = 8051.769541 C = 9244.334629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.552 3.448 15 O -0.566 6.566 16 C 0.116 3.884 17 C -0.128 4.128 18 C 0.017 3.983 19 Cl -0.021 7.021 20 C -0.093 4.093 21 C -0.111 4.111 22 C -0.086 4.086 23 C -0.083 4.083 24 C -0.100 4.100 25 C 0.112 3.888 26 N -0.448 5.448 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.407 0.593 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 10.083 22.160 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.208 1.208 13 N -0.327 5.327 14 C 0.336 3.664 15 O -0.446 6.446 16 C -0.037 4.037 17 C -0.150 4.150 18 C -0.018 4.018 19 Cl 0.009 6.991 20 C -0.095 4.095 21 C -0.129 4.129 22 C -0.103 4.103 23 C -0.102 4.102 24 C -0.118 4.118 25 C -0.012 4.012 26 N -0.160 5.160 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.589 9.625 21.282 24.559 hybrid contribution 0.052 0.183 -0.600 0.630 sum -7.537 9.808 20.681 24.098 Atomic orbital electron populations 1.21691 0.96873 0.99411 1.00256 1.21796 0.93870 0.98826 1.01504 1.18545 0.94025 0.89407 0.80753 0.97536 1.21560 0.91209 1.39078 1.06951 0.91393 1.25733 1.03348 0.94208 0.94870 1.70040 1.36978 1.38115 1.09908 0.85317 0.79053 0.77923 0.78170 1.18712 1.20236 1.20822 1.46203 1.14721 1.53863 1.17946 1.18169 0.82813 0.79156 0.86255 1.90735 1.52398 1.61284 1.40174 1.21167 0.91451 0.97868 0.93216 1.21606 0.96871 0.97738 0.98801 1.20978 0.89015 0.97551 0.94256 1.98385 1.22689 1.80380 1.97667 1.18966 0.93738 1.01021 0.95809 1.21295 1.01829 0.98871 0.90945 1.21536 0.92418 0.96485 0.99881 1.21470 0.97414 0.94223 0.97133 1.21160 0.99270 1.00044 0.91366 1.19297 0.93085 0.96342 0.92498 1.67821 1.33389 1.15004 0.99808 0.94302 0.94924 0.93285 0.90397 0.94243 0.92464 0.75724 0.82695 0.83044 0.80994 0.81023 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.14 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.58 2.24 44.25 0.10 14.68 16 4 H 0.01 0.41 7.58 -2.38 -0.02 0.40 16 5 C -0.55 -29.89 8.73 25.60 0.22 -29.67 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.22 11.28 21.45 0.24 -51.98 16 9 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.68 -30.82 5.01 -448.56 -2.25 -33.07 16 14 C 0.55 24.03 6.38 86.92 0.55 24.58 16 15 O -0.57 -27.58 13.42 -3.71 -0.05 -27.63 16 16 C 0.12 4.17 6.75 42.28 0.29 4.46 16 17 C -0.13 -3.99 9.35 22.38 0.21 -3.78 16 18 C 0.02 0.43 6.36 22.56 0.14 0.57 16 19 Cl -0.02 -0.41 27.64 -2.72 -0.08 -0.48 16 20 C -0.09 -2.16 5.75 -21.21 -0.12 -2.28 16 21 C -0.11 -1.72 9.46 22.30 0.21 -1.51 16 22 C -0.09 -0.88 9.96 22.07 0.22 -0.66 16 23 C -0.08 -0.95 9.94 22.04 0.22 -0.73 16 24 C -0.10 -1.90 9.99 22.38 0.22 -1.68 16 25 C 0.11 2.95 6.61 40.45 0.27 3.22 16 26 N -0.45 -14.67 9.47 -177.84 -1.68 -16.36 16 27 H 0.04 1.75 5.65 -2.38 -0.01 1.73 16 28 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 4.33 5.94 -2.38 -0.01 4.31 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 33 H 0.41 17.01 7.84 -92.71 -0.73 16.28 16 34 H 0.16 4.82 7.60 -2.91 -0.02 4.80 16 35 H 0.15 1.81 7.05 -2.91 -0.02 1.79 16 36 H 0.17 0.45 8.06 -2.92 -0.02 0.42 16 37 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -67.24 334.44 2.36 -64.88 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.38 Total: 22.47 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 3.76 Total: -2.43 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.69 Total: -101.40 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -67.24 2.36 -64.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109596527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.969 kcal (2) G-P(sol) polarization free energy of solvation -67.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds