Wall clock time and date at job start Tue Mar 31 2020 12:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47200 * 2 1 4 4 C 1.50707 * 109.47191 * 119.99935 * 2 1 3 5 5 H 1.07996 * 119.99852 * 119.99524 * 4 2 1 6 6 C 1.37875 * 119.99918 * 300.00522 * 4 2 1 7 7 N 1.31513 * 120.00298 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99812 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47158 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47088 * 119.99316 * 8 6 4 11 11 H 1.48499 * 109.46916 * 239.99449 * 8 6 4 12 12 N 1.46498 * 109.46895 * 239.99915 * 2 1 3 13 13 C 1.46498 * 120.00407 * 299.99693 * 12 2 1 14 14 C 1.34783 * 119.99604 * 120.00471 * 12 2 1 15 15 O 1.21502 * 120.00110 * 1.98284 * 14 12 2 16 16 C 1.48281 * 119.99500 * 181.98956 * 14 12 2 17 17 C 1.40194 * 119.22782 * 172.73755 * 16 14 12 18 18 C 1.36685 * 119.80281 * 179.97438 * 17 16 14 19 19 Cl 1.73591 * 120.89410 * 180.02562 * 18 17 16 20 20 C 1.40890 * 118.21099 * 0.02562 * 18 17 16 21 21 C 1.40381 * 121.27364 * 179.97438 * 20 18 17 22 22 C 1.36153 * 119.65025 * 179.97438 * 21 20 18 23 23 C 1.39421 * 120.90198 * 0.08974 * 22 21 20 24 24 C 1.36005 * 121.08154 * 359.93049 * 23 22 21 25 25 C 1.40808 * 119.73619 * 0.02562 * 24 23 22 26 26 N 1.31910 * 119.23273 * 352.75448 * 16 14 12 27 27 H 1.09006 * 109.47260 * 299.99528 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99993 * 1 2 3 29 29 H 1.09008 * 109.47220 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99901 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47521 * 263.74800 * 13 12 2 32 32 H 1.09001 * 109.46540 * 23.74856 * 13 12 2 33 33 H 1.08997 * 109.47229 * 143.74267 * 13 12 2 34 34 H 1.08004 * 120.09986 * 0.27169 * 17 16 14 35 35 H 1.07997 * 120.18101 * 0.02562 * 21 20 18 36 36 H 1.07999 * 119.54963 * 180.02562 * 22 21 20 37 37 H 1.08007 * 119.45880 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.13278 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6035 8 14 2.3225 -1.1196 4.0080 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 7 2.0182 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1165 1.1166 -1.8731 16 6 3.2509 -0.7211 -3.3159 17 6 3.9252 0.0164 -4.2992 18 6 4.3528 -0.6038 -5.4397 19 17 5.1909 0.2818 -6.6752 20 6 4.0950 -1.9812 -5.5855 21 6 4.5049 -2.6821 -6.7307 22 6 4.2388 -4.0132 -6.8369 23 6 3.5623 -4.6912 -5.8239 24 6 3.1498 -4.0450 -4.7005 25 6 3.4066 -2.6684 -4.5525 26 7 3.0139 -2.0105 -3.4617 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7093 1.1616 3.4845 31 1 2.4694 -2.7350 -1.0701 32 1 0.7455 -2.3295 -0.8915 33 1 1.5149 -2.2586 -2.4949 34 1 4.1105 1.0704 -4.1538 35 1 5.0292 -2.1685 -7.5229 36 1 4.5553 -4.5509 -7.7185 37 1 3.3631 -5.7472 -5.9326 38 1 2.6272 -4.5854 -3.9251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109596611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:20 Heat of formation + Delta-G solvation = 35.477125 kcal Electronic energy + Delta-G solvation = -23768.299082 eV Core-core repulsion = 20216.534830 eV Total energy + Delta-G solvation = -3551.764252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20398 -39.08713 -37.24334 -36.83320 -35.46672 -33.50927 -32.71411 -30.97630 -30.35125 -29.12954 -26.19591 -25.29224 -24.98606 -23.99089 -22.32331 -21.55056 -19.22448 -18.17894 -17.79278 -17.02615 -16.37426 -15.67610 -15.29475 -15.20630 -14.89040 -14.72170 -14.27574 -14.13300 -14.08411 -13.58822 -12.99154 -12.67162 -12.57842 -12.31864 -12.16331 -11.98306 -11.83251 -11.53926 -11.33514 -11.24983 -11.05843 -10.79071 -10.72182 -10.30320 -10.24874 -10.16880 -9.72632 -9.15703 -9.04233 -8.92891 -8.46624 -8.43005 -7.59182 -6.06840 -4.14439 -0.04233 0.43895 1.62864 1.63404 2.38681 3.27364 3.35075 3.38315 3.45448 3.61813 4.00157 4.08106 4.35957 4.37586 4.43760 4.54944 4.86825 4.89488 5.07482 5.17632 5.24607 5.27189 5.50875 5.69038 5.79763 6.00483 6.05681 6.13623 6.14100 6.39891 6.50256 6.64511 6.78922 6.86003 7.03976 7.37220 7.47383 7.58985 7.71591 8.00415 8.17458 8.46647 8.77659 8.95815 9.51730 10.98628 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.003532 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.042575 B = 7925.998774 C = 8775.203408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.560 5.560 13 C 0.084 3.916 14 C 0.548 3.452 15 O -0.542 6.542 16 C 0.143 3.857 17 C -0.112 4.112 18 C 0.011 3.989 19 Cl -0.044 7.044 20 C -0.087 4.087 21 C -0.100 4.100 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.082 4.082 25 C 0.129 3.871 26 N -0.426 5.426 27 H 0.095 0.905 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -9.661 -19.952 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.289 5.289 13 C -0.060 4.060 14 C 0.332 3.668 15 O -0.420 6.420 16 C -0.011 4.011 17 C -0.133 4.133 18 C -0.024 4.024 19 Cl -0.015 7.015 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.100 4.100 25 C 0.006 3.994 26 N -0.139 5.139 27 H 0.114 0.886 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.179 0.821 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.546 -9.391 -19.130 21.790 hybrid contribution 0.858 0.004 0.114 0.866 sum 5.404 -9.387 -19.016 21.884 Atomic orbital electron populations 1.22103 0.97838 0.99627 1.00974 1.19104 0.91126 0.94611 0.79754 0.91681 1.21338 1.31781 1.12992 0.90062 0.92074 1.24885 0.94937 0.94983 0.98957 1.69887 1.36458 1.22620 1.23681 0.86421 0.78605 0.79606 0.82664 1.19784 1.20904 1.20922 1.48226 1.46155 1.12427 1.22057 1.22138 1.00254 0.81595 1.01974 1.17767 0.80756 0.85969 0.82330 1.90756 1.57999 1.16834 1.76435 1.21849 0.94457 0.89475 0.95335 1.21739 0.96938 1.03159 0.91476 1.20931 0.98047 0.91625 0.91790 1.98381 1.75909 1.74567 1.52632 1.18721 1.01037 0.92176 0.97099 1.21021 0.99522 0.94834 0.96458 1.20976 0.98126 0.94301 0.99180 1.20966 0.97446 1.00553 0.93307 1.20901 0.99326 0.91342 0.98454 1.19080 0.95970 0.94735 0.89633 1.68700 1.15911 1.08387 1.20863 0.88610 0.96876 0.94875 0.92721 0.93229 0.91830 0.89439 0.82137 0.84858 0.85243 0.84922 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.96 37.16 0.33 -3.20 16 2 C 0.25 6.56 2.63 -69.08 -0.18 6.37 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.56 -12.49 2.75 -176.22 -0.49 -12.98 16 13 C 0.08 1.55 8.49 59.85 0.51 2.06 16 14 C 0.55 11.89 7.66 -12.13 -0.09 11.80 16 15 O -0.54 -13.32 15.63 5.36 0.08 -13.24 16 16 C 0.14 2.50 6.63 -82.97 -0.55 1.95 16 17 C -0.11 -1.70 9.35 -39.41 -0.37 -2.07 16 18 C 0.01 0.14 6.36 -39.14 -0.25 -0.11 16 19 Cl -0.04 -0.47 27.64 -51.86 -1.43 -1.91 16 20 C -0.09 -1.09 5.75 -106.69 -0.61 -1.70 16 21 C -0.10 -0.96 9.46 -39.53 -0.37 -1.33 16 22 C -0.11 -0.84 9.96 -39.89 -0.40 -1.23 16 23 C -0.10 -0.82 9.94 -39.94 -0.40 -1.21 16 24 C -0.08 -0.85 9.99 -39.41 -0.39 -1.24 16 25 C 0.13 1.72 6.61 -84.86 -0.56 1.16 16 26 N -0.43 -6.74 5.95 -7.56 -0.04 -6.78 16 27 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.73 6.67 -51.92 -0.35 0.39 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.17 6.44 -51.93 -0.33 0.84 16 33 H 0.09 1.45 5.27 -52.23 -0.28 1.17 16 34 H 0.16 2.40 7.62 -52.48 -0.40 2.00 16 35 H 0.13 1.07 7.05 -52.49 -0.37 0.70 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -30.75 332.03 -9.04 -39.79 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.05 Total: 0.10 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.72 Total: -1.67 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.10 Total: -44.24 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.43 Total: -1.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.75 -9.04 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109596611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.269 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds