Wall clock time and date at job start Tue Mar 31 2020 12:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47200 * 2 1 4 4 C 1.50707 * 109.47191 * 119.99935 * 2 1 3 5 5 H 1.07996 * 119.99852 * 119.99524 * 4 2 1 6 6 C 1.37875 * 119.99918 * 300.00522 * 4 2 1 7 7 N 1.31513 * 120.00298 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99812 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47158 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47088 * 119.99316 * 8 6 4 11 11 H 1.48499 * 109.46916 * 239.99449 * 8 6 4 12 12 N 1.46498 * 109.46895 * 239.99915 * 2 1 3 13 13 C 1.46498 * 120.00407 * 299.99693 * 12 2 1 14 14 C 1.34783 * 119.99604 * 120.00471 * 12 2 1 15 15 O 1.21502 * 120.00110 * 1.98284 * 14 12 2 16 16 C 1.48281 * 119.99500 * 181.98956 * 14 12 2 17 17 C 1.40194 * 119.22782 * 172.73755 * 16 14 12 18 18 C 1.36685 * 119.80281 * 179.97438 * 17 16 14 19 19 Cl 1.73591 * 120.89410 * 180.02562 * 18 17 16 20 20 C 1.40890 * 118.21099 * 0.02562 * 18 17 16 21 21 C 1.40381 * 121.27364 * 179.97438 * 20 18 17 22 22 C 1.36153 * 119.65025 * 179.97438 * 21 20 18 23 23 C 1.39421 * 120.90198 * 0.08974 * 22 21 20 24 24 C 1.36005 * 121.08154 * 359.93049 * 23 22 21 25 25 C 1.40808 * 119.73619 * 0.02562 * 24 23 22 26 26 N 1.31910 * 119.23273 * 352.75448 * 16 14 12 27 27 H 1.09006 * 109.47260 * 299.99528 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99993 * 1 2 3 29 29 H 1.09008 * 109.47220 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99901 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47521 * 263.74800 * 13 12 2 32 32 H 1.09001 * 109.46540 * 23.74856 * 13 12 2 33 33 H 1.08997 * 109.47229 * 143.74267 * 13 12 2 34 34 H 1.08004 * 120.09986 * 0.27169 * 17 16 14 35 35 H 1.07997 * 120.18101 * 0.02562 * 21 20 18 36 36 H 1.07999 * 119.54963 * 180.02562 * 22 21 20 37 37 H 1.08007 * 119.45880 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.13278 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6035 8 14 2.3225 -1.1196 4.0080 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 7 2.0182 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1165 1.1166 -1.8731 16 6 3.2509 -0.7211 -3.3159 17 6 3.9252 0.0164 -4.2992 18 6 4.3528 -0.6038 -5.4397 19 17 5.1909 0.2818 -6.6752 20 6 4.0950 -1.9812 -5.5855 21 6 4.5049 -2.6821 -6.7307 22 6 4.2388 -4.0132 -6.8369 23 6 3.5623 -4.6912 -5.8239 24 6 3.1498 -4.0450 -4.7005 25 6 3.4066 -2.6684 -4.5525 26 7 3.0139 -2.0105 -3.4617 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7093 1.1616 3.4845 31 1 2.4694 -2.7350 -1.0701 32 1 0.7455 -2.3295 -0.8915 33 1 1.5149 -2.2586 -2.4949 34 1 4.1105 1.0704 -4.1538 35 1 5.0292 -2.1685 -7.5229 36 1 4.5553 -4.5509 -7.7185 37 1 3.3631 -5.7472 -5.9326 38 1 2.6272 -4.5854 -3.9251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109596611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:19 Heat of formation + Delta-G solvation = 18.387581 kcal Electronic energy + Delta-G solvation = -23769.040140 eV Core-core repulsion = 20216.534830 eV Total energy + Delta-G solvation = -3552.505310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27732 -40.60362 -38.18522 -37.87732 -37.28922 -34.95542 -34.22761 -32.17584 -31.41557 -30.69426 -27.75801 -27.32413 -26.29923 -24.95589 -23.21397 -23.14954 -20.83890 -19.17930 -18.90378 -18.50358 -18.19339 -17.32136 -16.69789 -16.52203 -16.18197 -15.77499 -15.57936 -15.44097 -15.05459 -14.78420 -14.46524 -14.40391 -13.99750 -13.66110 -13.47468 -13.26074 -13.00300 -12.81126 -12.73794 -12.72044 -12.65565 -12.39217 -12.20624 -12.15567 -12.12597 -11.32001 -11.21894 -11.18131 -10.55467 -10.30284 -10.00341 -9.38526 -9.32065 -8.16052 -6.32575 -1.03931 -0.54169 0.63897 0.76281 1.28031 1.40731 1.42266 1.54086 2.09033 2.18410 2.42792 2.88083 2.94375 3.11896 3.37312 3.46231 3.56746 3.96939 4.02001 4.22790 4.29241 4.41016 4.50617 4.56515 4.77276 4.82289 4.87417 4.91632 4.96988 5.03430 5.09942 5.30158 5.33513 5.41993 5.42579 5.57517 5.64654 5.78357 5.97970 6.12542 6.42945 6.68428 6.73469 7.15207 7.39629 8.88817 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.003532 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.042575 B = 7925.998774 C = 8775.203408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.257 3.743 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.571 5.571 13 C 0.091 3.909 14 C 0.542 3.458 15 O -0.586 6.586 16 C 0.117 3.883 17 C -0.129 4.129 18 C 0.018 3.982 19 Cl -0.022 7.022 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.085 4.085 23 C -0.083 4.083 24 C -0.096 4.096 25 C 0.107 3.893 26 N -0.431 5.431 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.048 0.952 30 H 0.266 0.734 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 -13.414 -22.485 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.034 0.966 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.299 5.299 13 C -0.051 4.051 14 C 0.328 3.672 15 O -0.468 6.468 16 C -0.035 4.035 17 C -0.151 4.151 18 C -0.017 4.017 19 Cl 0.008 6.992 20 C -0.094 4.094 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.103 4.103 24 C -0.115 4.115 25 C -0.016 4.016 26 N -0.144 5.144 27 H 0.092 0.908 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.317 -13.165 -21.683 25.918 hybrid contribution 0.703 1.008 0.640 1.385 sum 6.020 -12.157 -21.043 25.037 Atomic orbital electron populations 1.21889 0.96601 1.00331 1.00251 1.18739 0.92035 0.92432 0.81203 0.96642 1.21534 1.32098 1.13036 0.91060 0.92496 1.25714 0.94979 0.95628 1.01898 1.70017 1.37170 1.23738 1.24503 0.85381 0.78294 0.78424 0.78759 1.19219 1.20928 1.19660 1.48206 1.46618 1.13739 1.21350 1.22251 1.00004 0.79372 1.03461 1.18388 0.79773 0.85655 0.83361 1.90701 1.59437 1.18859 1.77760 1.21029 0.97648 0.90451 0.94410 1.21545 0.98370 1.02724 0.92417 1.20961 0.97205 0.92200 0.91325 1.98383 1.75255 1.74288 1.51314 1.18967 1.00655 0.91852 0.97940 1.21283 1.00082 0.95878 0.95800 1.21532 0.95320 0.93474 0.99964 1.21475 0.94863 1.02285 0.91647 1.21162 1.00215 0.89985 1.00108 1.19489 0.96865 0.96027 0.89252 1.68422 1.16120 1.07494 1.22369 0.90848 0.95963 0.93290 0.92480 0.93238 0.91881 0.87239 0.83172 0.83237 0.81133 0.80987 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.96 71.98 0.64 -5.96 16 2 C 0.26 14.05 2.63 44.25 0.12 14.16 16 3 H 0.02 1.00 6.90 -2.39 -0.02 0.98 16 4 C -0.54 -30.48 8.37 25.60 0.21 -30.27 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 8 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.57 -26.82 2.75 -829.72 -2.28 -29.10 16 13 C 0.09 3.43 8.49 127.77 1.08 4.52 16 14 C 0.54 25.21 7.66 86.91 0.67 25.88 16 15 O -0.59 -31.42 15.63 -3.72 -0.06 -31.48 16 16 C 0.12 4.31 6.63 42.28 0.28 4.59 16 17 C -0.13 -4.13 9.35 22.38 0.21 -3.92 16 18 C 0.02 0.46 6.36 22.56 0.14 0.60 16 19 Cl -0.02 -0.44 27.64 -2.72 -0.08 -0.52 16 20 C -0.09 -2.10 5.75 -21.21 -0.12 -2.22 16 21 C -0.11 -1.70 9.46 22.31 0.21 -1.49 16 22 C -0.09 -0.83 9.96 22.07 0.22 -0.61 16 23 C -0.08 -0.86 9.94 22.04 0.22 -0.64 16 24 C -0.10 -1.68 9.99 22.38 0.22 -1.45 16 25 C 0.11 2.70 6.61 40.45 0.27 2.97 16 26 N -0.43 -13.73 5.95 -177.83 -1.06 -14.79 16 27 H 0.07 4.00 6.07 -2.38 -0.01 3.99 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 2.23 6.67 -2.38 -0.02 2.21 16 30 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.33 6.44 -2.39 -0.02 2.32 16 33 H 0.11 3.63 5.27 -2.99 -0.02 3.62 16 34 H 0.15 4.94 7.62 -2.91 -0.02 4.92 16 35 H 0.15 1.78 7.05 -2.91 -0.02 1.76 16 36 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.77 332.03 4.72 -67.06 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.10 Total: 8.38 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 4.83 Total: 7.59 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.10 Total: -97.04 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -71.77 4.72 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109596611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.444 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds