Wall clock time and date at job start Tue Mar 31 2020 12:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47596 * 2 1 4 4 C 1.50705 * 109.47249 * 240.00110 * 2 1 3 5 5 H 1.08003 * 119.99617 * 240.00356 * 4 2 1 6 6 C 1.37872 * 119.99986 * 59.99831 * 4 2 1 7 7 N 1.31511 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47394 * 60.00034 * 8 6 4 10 10 H 1.48498 * 109.47519 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47267 * 299.99930 * 8 6 4 12 12 O 1.45196 * 109.47257 * 119.99985 * 2 1 3 13 13 C 1.34234 * 117.00110 * 270.00351 * 12 2 1 14 14 O 1.20820 * 119.99814 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00025 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47013 * 179.97438 * 15 13 12 17 17 C 1.35746 * 116.99632 * 179.97438 * 16 15 13 18 18 C 1.39367 * 119.73328 * 0.25591 * 17 16 15 19 19 C 1.36465 * 120.42917 * 180.25208 * 18 17 16 20 20 C 1.39959 * 119.79316 * 359.75145 * 19 18 17 21 21 C 1.46440 * 120.98231 * 180.02562 * 20 19 18 22 22 C 1.35847 * 118.19500 * 179.97438 * 21 20 19 23 23 C 1.41002 * 119.82168 * 359.97438 * 22 21 20 24 24 O 1.21793 * 119.15287 * 179.97438 * 23 22 21 25 25 O 1.34221 * 121.69342 * 0.02562 * 23 22 21 26 26 C 1.35034 * 121.46331 * 0.02562 * 25 23 22 27 27 C 1.38519 * 119.72157 * 179.97438 * 17 16 15 28 28 H 1.09000 * 109.47065 * 300.00238 * 1 2 3 29 29 H 1.09002 * 109.46732 * 59.99956 * 1 2 3 30 30 H 1.09002 * 109.46882 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00218 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47098 * 59.99382 * 15 13 12 33 33 H 1.09004 * 109.47169 * 299.99804 * 15 13 12 34 34 H 1.08002 * 119.78157 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.10019 * 179.76482 * 19 18 17 36 36 H 1.08005 * 120.90070 * 359.97438 * 21 20 19 37 37 H 1.07998 * 120.08744 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.11090 * 0.03219 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5203 -4.0078 10 1 1.8271 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2504 15 6 2.7182 -0.5772 3.5495 16 8 2.8539 0.4187 4.5653 17 6 3.2979 0.0041 5.7793 18 6 3.6018 -1.3409 5.9817 19 6 4.0443 -1.7740 7.1978 20 6 4.1989 -0.8608 8.2472 21 6 4.6724 -1.2970 9.5624 22 6 4.8023 -0.3628 10.5401 23 6 4.4838 0.9839 10.2699 24 8 4.6043 1.8113 11.1555 25 8 4.0503 1.3773 9.0621 26 6 3.8982 0.4994 8.0475 27 6 3.4507 0.9225 6.8049 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7087 1.1612 -3.4844 32 1 3.6871 -1.0409 3.3640 33 1 2.0087 -1.3369 3.8775 34 1 3.4820 -2.0456 5.1722 35 1 4.2746 -2.8181 7.3499 36 1 4.9119 -2.3334 9.7501 37 1 5.1486 -0.6509 11.5217 38 1 3.2170 1.9638 6.6391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:16 Heat of formation + Delta-G solvation = -145.881562 kcal Electronic energy + Delta-G solvation = -24835.567142 eV Core-core repulsion = 20802.936672 eV Total energy + Delta-G solvation = -4032.630470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22229 -40.58317 -39.50342 -38.36649 -37.08329 -35.83294 -34.59355 -33.39661 -31.56058 -30.25358 -29.66040 -28.40364 -25.42202 -24.71880 -24.57475 -23.37290 -22.11158 -20.20283 -19.73652 -18.63015 -17.94661 -17.61612 -17.10861 -16.97764 -16.66332 -16.38194 -15.97994 -15.72835 -15.09126 -14.86509 -14.59042 -14.54356 -14.22306 -14.13767 -13.64211 -13.26589 -12.88211 -12.66621 -12.42563 -12.29658 -12.05234 -11.73260 -11.58855 -11.31549 -11.14869 -10.94677 -10.66379 -10.50563 -10.47245 -10.37121 -9.85050 -9.69254 -9.27451 -9.04822 -8.58790 -8.47678 -6.27473 -4.35639 -0.15213 0.59898 1.15946 1.80950 2.45261 2.49247 2.68760 3.20267 3.24627 3.26797 3.26866 3.65791 3.79410 3.95159 3.99819 4.23397 4.27212 4.45251 4.69647 4.75998 4.88459 4.94382 5.05626 5.18215 5.26520 5.31141 5.38253 5.58308 5.69007 5.74807 5.86971 6.50297 6.75301 6.77854 6.80775 6.83867 6.98849 7.13726 7.47375 7.60291 7.79871 8.00846 8.42465 8.73268 9.30026 10.79803 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.002074 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.854724 B =13500.023852 C =13905.083837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.049 0.951 4 C -0.525 4.525 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.915 3.085 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 O -0.351 6.351 13 C 0.453 3.547 14 O -0.496 6.496 15 C 0.063 3.937 16 O -0.280 6.280 17 C 0.199 3.801 18 C -0.229 4.229 19 C -0.009 4.009 20 C -0.206 4.206 21 C 0.017 3.983 22 C -0.264 4.264 23 C 0.510 3.490 24 O -0.468 6.468 25 O -0.269 6.269 26 C 0.190 3.810 27 C -0.175 4.175 28 H 0.017 0.983 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.268 0.732 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -9.184 20.792 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.166 3.834 3 H 0.067 0.933 4 C -0.563 4.563 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.268 6.268 13 C 0.294 3.706 14 O -0.384 6.384 15 C -0.013 4.013 16 O -0.191 6.191 17 C 0.151 3.849 18 C -0.247 4.247 19 C -0.027 4.027 20 C -0.207 4.207 21 C -0.002 4.002 22 C -0.284 4.284 23 C 0.360 3.640 24 O -0.356 6.356 25 O -0.181 6.181 26 C 0.144 3.856 27 C -0.194 4.194 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.219 -7.897 20.893 23.186 hybrid contribution 0.261 -0.638 -0.835 1.083 sum 6.480 -8.536 20.058 22.742 Atomic orbital electron populations 1.22187 0.97292 1.00281 1.01654 1.20759 0.91550 0.94061 0.77055 0.93299 1.20951 1.32955 1.13680 0.88688 0.91228 1.24898 0.94853 0.95092 0.99123 1.69881 1.35690 1.22408 1.24499 0.86288 0.79215 0.79492 0.80867 1.19889 1.20980 1.19940 1.86456 1.75994 1.43456 1.20876 1.22453 0.76267 0.86156 0.85756 1.90674 1.46957 1.16481 1.84238 1.22159 1.03974 0.90078 0.85120 1.86126 1.79215 1.36142 1.17664 1.18780 0.89715 0.91780 0.84635 1.21186 1.08421 0.94959 1.00146 1.20669 0.92460 0.99119 0.90413 1.19034 1.12485 0.92781 0.96445 1.22797 0.87407 1.00282 0.89709 1.22490 1.10705 0.92192 1.02974 1.19245 0.75734 0.89923 0.79141 1.90990 1.49926 1.56359 1.38334 1.83563 1.72161 1.41836 1.20496 1.18504 0.94370 0.86478 0.86208 1.19491 1.09348 1.01747 0.88783 0.96373 0.88026 0.94263 0.92177 0.87425 0.87507 0.83578 0.83757 0.82960 0.82031 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.33 37.16 0.35 -3.45 16 2 C 0.22 5.57 2.56 -27.88 -0.07 5.50 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.07 8.90 -34.44 -0.31 -14.37 16 5 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 12 O -0.35 -7.62 9.86 -39.27 -0.39 -8.01 16 13 C 0.45 8.64 8.01 36.01 0.29 8.93 16 14 O -0.50 -11.35 15.72 -25.47 -0.40 -11.75 16 15 C 0.06 0.77 5.32 36.01 0.19 0.96 16 16 O -0.28 -3.75 9.65 -38.90 -0.38 -4.13 16 17 C 0.20 2.09 6.69 -39.06 -0.26 1.83 16 18 C -0.23 -1.70 8.96 -39.80 -0.36 -2.06 16 19 C -0.01 -0.05 9.78 -39.58 -0.39 -0.44 16 20 C -0.21 -1.57 5.87 -105.01 -0.62 -2.19 16 21 C 0.02 0.09 10.12 -37.14 -0.38 -0.29 16 22 C -0.26 -1.96 9.93 -39.39 -0.39 -2.35 16 23 C 0.51 5.89 7.89 31.78 0.25 6.14 16 24 O -0.47 -6.91 17.91 -19.60 -0.35 -7.26 16 25 O -0.27 -3.22 9.82 -20.82 -0.20 -3.43 16 26 C 0.19 1.94 6.76 -38.48 -0.26 1.68 16 27 C -0.17 -1.88 9.94 -39.31 -0.39 -2.27 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 2.65 6.07 -51.93 -0.32 2.34 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.11 1.01 7.63 -51.93 -0.40 0.61 16 33 H 0.11 0.97 7.65 -51.93 -0.40 0.58 16 34 H 0.15 0.78 6.24 -52.49 -0.33 0.45 16 35 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -33.56 339.87 -7.31 -40.88 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.89 Total: -2.07 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.43 Total: -0.79 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.72 Total: -34.58 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.56 -7.31 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.002 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds