Wall clock time and date at job start Tue Mar 31 2020 12:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47596 * 2 1 4 4 C 1.50705 * 109.47249 * 240.00110 * 2 1 3 5 5 H 1.08003 * 119.99617 * 240.00356 * 4 2 1 6 6 C 1.37872 * 119.99986 * 59.99831 * 4 2 1 7 7 N 1.31511 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47394 * 60.00034 * 8 6 4 10 10 H 1.48498 * 109.47519 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47267 * 299.99930 * 8 6 4 12 12 O 1.45196 * 109.47257 * 119.99985 * 2 1 3 13 13 C 1.34234 * 117.00110 * 270.00351 * 12 2 1 14 14 O 1.20820 * 119.99814 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00025 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47013 * 179.97438 * 15 13 12 17 17 C 1.35746 * 116.99632 * 179.97438 * 16 15 13 18 18 C 1.39367 * 119.73328 * 0.25591 * 17 16 15 19 19 C 1.36465 * 120.42917 * 180.25208 * 18 17 16 20 20 C 1.39959 * 119.79316 * 359.75145 * 19 18 17 21 21 C 1.46440 * 120.98231 * 180.02562 * 20 19 18 22 22 C 1.35847 * 118.19500 * 179.97438 * 21 20 19 23 23 C 1.41002 * 119.82168 * 359.97438 * 22 21 20 24 24 O 1.21793 * 119.15287 * 179.97438 * 23 22 21 25 25 O 1.34221 * 121.69342 * 0.02562 * 23 22 21 26 26 C 1.35034 * 121.46331 * 0.02562 * 25 23 22 27 27 C 1.38519 * 119.72157 * 179.97438 * 17 16 15 28 28 H 1.09000 * 109.47065 * 300.00238 * 1 2 3 29 29 H 1.09002 * 109.46732 * 59.99956 * 1 2 3 30 30 H 1.09002 * 109.46882 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00218 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47098 * 59.99382 * 15 13 12 33 33 H 1.09004 * 109.47169 * 299.99804 * 15 13 12 34 34 H 1.08002 * 119.78157 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.10019 * 179.76482 * 19 18 17 36 36 H 1.08005 * 120.90070 * 359.97438 * 21 20 19 37 37 H 1.07998 * 120.08744 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.11090 * 0.03219 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5203 -4.0078 10 1 1.8271 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2504 15 6 2.7182 -0.5772 3.5495 16 8 2.8539 0.4187 4.5653 17 6 3.2979 0.0041 5.7793 18 6 3.6018 -1.3409 5.9817 19 6 4.0443 -1.7740 7.1978 20 6 4.1989 -0.8608 8.2472 21 6 4.6724 -1.2970 9.5624 22 6 4.8023 -0.3628 10.5401 23 6 4.4838 0.9839 10.2699 24 8 4.6043 1.8113 11.1555 25 8 4.0503 1.3773 9.0621 26 6 3.8982 0.4994 8.0475 27 6 3.4507 0.9225 6.8049 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7087 1.1612 -3.4844 32 1 3.6871 -1.0409 3.3640 33 1 2.0087 -1.3369 3.8775 34 1 3.4820 -2.0456 5.1722 35 1 4.2746 -2.8181 7.3499 36 1 4.9119 -2.3334 9.7501 37 1 5.1486 -0.6509 11.5217 38 1 3.2170 1.9638 6.6391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:15 Heat of formation + Delta-G solvation = -165.608488 kcal Electronic energy + Delta-G solvation = -24836.422566 eV Core-core repulsion = 20802.936672 eV Total energy + Delta-G solvation = -4033.485894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.98466 -41.69813 -40.82682 -39.29368 -37.96437 -37.47103 -35.36340 -35.22722 -32.31889 -31.83973 -30.66896 -29.46523 -27.45711 -25.39961 -25.38904 -24.05100 -23.71070 -21.71680 -20.70372 -19.36133 -19.03844 -18.70079 -18.54557 -17.97833 -17.77551 -17.62006 -17.44850 -16.60921 -16.33939 -16.26948 -15.89905 -15.11566 -15.03808 -14.81016 -14.69990 -14.56264 -14.24430 -14.01579 -13.71584 -13.37199 -13.16798 -13.01462 -12.93953 -12.80962 -12.51347 -12.39474 -12.35998 -12.17610 -11.64285 -11.48407 -11.38088 -11.11507 -11.02596 -10.59966 -9.96056 -9.17090 -8.28717 -6.46185 -0.75796 -0.07354 0.50881 0.93053 1.18534 1.42131 1.47598 1.49434 1.57516 1.76285 2.34513 2.59045 2.63337 3.02594 3.14369 3.41399 3.47760 3.56412 3.77984 3.93120 4.00830 4.03325 4.14987 4.42257 4.51551 4.60682 4.68221 4.75023 4.76781 4.81086 5.04603 5.10390 5.12483 5.16451 5.32708 5.47813 5.60648 5.89140 6.02618 6.03433 6.06828 6.36177 6.58732 6.86135 7.25313 8.78671 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.002074 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.854724 B =13500.023852 C =13905.083837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.267 1.267 12 O -0.350 6.350 13 C 0.445 3.555 14 O -0.545 6.545 15 C 0.076 3.924 16 O -0.316 6.316 17 C 0.183 3.817 18 C -0.222 4.222 19 C 0.014 3.986 20 C -0.207 4.207 21 C 0.054 3.946 22 C -0.282 4.282 23 C 0.499 3.501 24 O -0.523 6.523 25 O -0.296 6.296 26 C 0.165 3.835 27 C -0.200 4.200 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.271 0.729 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.211 0.789 37 H 0.184 0.816 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -14.278 21.206 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.192 1.192 12 O -0.267 6.267 13 C 0.288 3.712 14 O -0.435 6.435 15 C 0.001 3.999 16 O -0.229 6.229 17 C 0.137 3.863 18 C -0.240 4.240 19 C -0.003 4.003 20 C -0.208 4.208 21 C 0.036 3.964 22 C -0.300 4.300 23 C 0.352 3.648 24 O -0.415 6.415 25 O -0.209 6.209 26 C 0.121 3.879 27 C -0.219 4.219 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.196 0.804 35 H 0.216 0.784 36 H 0.227 0.773 37 H 0.201 0.799 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.506 -13.021 21.322 26.087 hybrid contribution -0.141 0.975 -0.929 1.354 sum 7.365 -12.047 20.394 24.804 Atomic orbital electron populations 1.22008 0.96613 1.00756 1.00837 1.20413 0.92117 0.92123 0.78819 0.97613 1.21273 1.33526 1.14072 0.89538 0.90688 1.25876 0.94742 0.95679 1.02340 1.70021 1.36556 1.23739 1.25321 0.85195 0.78791 0.78665 0.76538 1.18512 1.20727 1.19232 1.86425 1.76223 1.43139 1.20894 1.23866 0.74706 0.85783 0.86819 1.90658 1.49047 1.18848 1.84974 1.22296 1.06657 0.89284 0.81615 1.86053 1.80329 1.37546 1.18952 1.18909 0.90874 0.93320 0.83191 1.21563 1.07157 0.93417 1.01864 1.21256 0.89519 1.00974 0.88563 1.19461 1.11472 0.91492 0.98360 1.23331 0.83676 1.02154 0.87268 1.22560 1.12519 0.90052 1.04916 1.20027 0.74970 0.91427 0.78327 1.90944 1.52824 1.58003 1.39758 1.83465 1.72363 1.43692 1.21333 1.18763 0.95805 0.87907 0.85458 1.19486 1.11049 1.01384 0.90020 0.95834 0.90184 0.92936 0.92029 0.83501 0.83244 0.80449 0.78406 0.77266 0.79903 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.14 9.33 71.98 0.67 -6.47 16 2 C 0.22 11.46 2.56 29.85 0.08 11.53 16 3 H 0.01 0.36 7.16 -2.39 -0.02 0.35 16 4 C -0.55 -29.44 8.90 25.60 0.23 -29.21 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -51.67 11.32 21.44 0.24 -51.43 16 8 Si 0.99 41.08 29.54 68.60 2.03 43.10 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 O -0.35 -15.13 9.86 -51.46 -0.51 -15.64 16 13 C 0.44 16.92 8.01 71.24 0.57 17.49 16 14 O -0.54 -26.07 15.72 28.41 0.45 -25.62 16 15 C 0.08 1.67 5.32 71.24 0.38 2.05 16 16 O -0.32 -8.29 9.65 -71.63 -0.69 -8.98 16 17 C 0.18 3.61 6.69 22.61 0.15 3.76 16 18 C -0.22 -2.23 8.96 22.13 0.20 -2.03 16 19 C 0.01 0.08 9.78 22.27 0.22 0.30 16 20 C -0.21 -2.37 5.87 -20.12 -0.12 -2.48 16 21 C 0.05 0.31 10.12 23.85 0.24 0.56 16 22 C -0.28 -3.58 9.93 22.39 0.22 -3.36 16 23 C 0.50 12.05 7.89 68.50 0.54 12.59 16 24 O -0.52 -16.73 17.91 18.97 0.34 -16.39 16 25 O -0.30 -7.68 9.82 14.59 0.14 -7.53 16 26 C 0.17 3.38 6.76 22.98 0.16 3.54 16 27 C -0.20 -4.54 9.94 22.44 0.22 -4.32 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 4.31 6.07 -2.39 -0.01 4.30 16 30 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.27 14.31 8.31 -92.70 -0.77 13.53 16 32 H 0.15 2.09 7.63 -2.39 -0.02 2.07 16 33 H 0.15 2.02 7.65 -2.38 -0.02 2.01 16 34 H 0.18 0.67 6.24 -2.91 -0.02 0.65 16 35 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 36 H 0.21 -1.08 8.06 -2.91 -0.02 -1.10 16 37 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -82.25 339.87 7.31 -74.94 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.11 Total: 2.46 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.21 Total: 5.09 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.24 Total: -51.43 kcal Atomic # 8 Polarization: -73.90 SS G_CDS: -0.27 Total: -74.17 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -82.25 7.31 -74.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.673 kcal (2) G-P(sol) polarization free energy of solvation -82.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds