Wall clock time and date at job start Tue Mar 31 2020 12:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35982 * 117.00178 * 2 1 4 4 C 1.38543 * 120.08230 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.01812 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.17968 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.16580 * 359.97438 * 6 5 4 8 8 C 1.38727 * 119.97982 * 359.70194 * 7 6 5 9 9 N 1.40099 * 120.09102 * 180.26999 * 8 7 6 10 10 C 1.34775 * 119.99784 * 38.82068 * 9 8 7 11 11 S 1.71202 * 120.00205 * 2.95718 * 10 9 8 12 12 N 1.34779 * 119.99959 * 182.95129 * 10 9 8 13 13 C 1.40594 * 119.99967 * 184.59147 * 12 10 9 14 14 C 1.40659 * 126.08370 * 323.32753 * 13 12 10 15 15 N 1.30911 * 108.38826 * 179.81068 * 14 13 12 16 16 N 1.40074 * 108.40502 * 0.44058 * 15 14 13 17 17 C 1.37320 * 126.06734 * 179.69772 * 16 15 14 18 18 H 1.07999 * 120.00154 * 180.02562 * 17 16 15 19 19 C 1.38980 * 120.00245 * 0.02562 * 17 16 15 20 20 N 1.31303 * 119.99799 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00292 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46717 * 60.00498 * 21 19 17 23 23 H 1.48497 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46847 * 300.00722 * 21 19 17 25 25 C 1.35670 * 126.07829 * 143.62684 * 13 12 10 26 26 H 1.08996 * 109.47336 * 59.99684 * 1 2 3 27 27 H 1.09001 * 109.47143 * 300.00090 * 1 2 3 28 28 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08009 * 119.98896 * 359.95626 * 4 3 2 30 30 H 1.08000 * 119.91103 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.91758 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.00891 * 179.97438 * 7 6 5 33 33 H 0.97000 * 119.99963 * 218.82637 * 9 8 7 34 34 H 0.97002 * 120.00075 * 4.59831 * 12 10 9 35 35 H 1.07990 * 125.80309 * 359.96896 * 14 13 12 36 36 H 0.97007 * 119.99694 * 179.97438 * 20 19 17 37 37 H 1.08001 * 126.24930 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0005 5 6 1.9226 3.6057 0.0011 6 6 3.3032 3.6808 0.0005 7 6 4.0616 2.5254 0.0000 8 6 3.4374 1.2865 0.0062 9 7 4.2039 0.1138 0.0114 10 6 5.3342 0.0508 0.7428 11 16 5.7934 1.3760 1.7247 12 7 6.1029 -1.0555 0.7014 13 6 7.2291 -1.1606 1.5363 14 6 8.0979 -0.1129 1.8912 15 7 9.0229 -0.5937 2.6831 16 7 8.7882 -1.9638 2.8564 17 6 9.5446 -2.8241 3.6137 18 1 9.2732 -3.8674 3.6787 19 6 10.6592 -2.3522 4.2967 20 7 10.9889 -1.0837 4.2181 21 14 11.6885 -3.5227 5.3263 22 1 12.2288 -4.6003 4.4591 23 1 12.8121 -2.7773 5.9485 24 1 10.8425 -4.1207 6.3901 25 6 7.6745 -2.2918 2.1385 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2148 2.3195 0.0002 30 1 1.3340 4.5112 0.0019 31 1 3.7903 4.6448 0.0005 32 1 5.1398 2.5870 -0.0008 33 1 3.9211 -0.6527 -0.5114 34 1 5.8791 -1.7792 0.0954 35 1 8.0145 0.9140 1.5677 36 1 11.7667 -0.7542 4.6951 37 1 7.2290 -3.2728 2.0639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145476726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:27 Heat of formation + Delta-G solvation = 111.045524 kcal Electronic energy + Delta-G solvation = -23025.548889 eV Core-core repulsion = 19511.397987 eV Total energy + Delta-G solvation = -3514.150903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55951 -39.74418 -38.35817 -37.13609 -34.86235 -33.30913 -30.38389 -30.20484 -29.80015 -27.79812 -27.28373 -25.02320 -24.11786 -22.37040 -21.99537 -20.62124 -20.02604 -18.73934 -18.04615 -17.54131 -17.10780 -16.08614 -15.87729 -15.64303 -15.34273 -15.03342 -14.62443 -14.36646 -14.07157 -13.78483 -13.59628 -13.13585 -13.01429 -12.63954 -12.25622 -11.74517 -11.71065 -11.51962 -11.29059 -11.22742 -11.20221 -10.98248 -10.64655 -10.58577 -10.31673 -9.39217 -8.91375 -8.67462 -8.22285 -8.08679 -7.34421 -6.86193 -6.60659 -6.28405 -4.28318 1.12466 1.48491 1.89043 2.38931 2.90382 2.96361 3.03439 3.07303 3.10312 3.52123 3.72941 3.84680 3.93137 4.33108 4.71931 4.78917 4.85142 4.91701 4.97803 5.00805 5.19080 5.27736 5.45474 5.53230 5.86989 6.09946 6.17534 6.24431 6.29920 6.48128 6.61811 6.66834 6.82670 6.88706 7.09892 7.17638 7.28654 7.45148 7.77112 7.81214 8.20728 8.63572 9.29300 9.60361 10.34483 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.002818 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.108271 B = 9934.365103 C =10554.130083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.208 4.208 5 C -0.085 4.085 6 C -0.148 4.148 7 C -0.039 4.039 8 C 0.113 3.887 9 N -0.635 5.635 10 C 0.539 3.461 11 S -0.622 6.622 12 N -0.556 5.556 13 C -0.094 4.094 14 C 0.029 3.971 15 N -0.264 5.264 16 N -0.137 5.137 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.048 3.952 20 N -0.763 5.763 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.266 1.266 25 C -0.063 4.063 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.404 0.596 34 H 0.394 0.606 35 H 0.182 0.818 36 H 0.277 0.723 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.418 1.536 -10.761 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.063 3.937 4 C -0.228 4.228 5 C -0.104 4.104 6 C -0.169 4.169 7 C -0.063 4.063 8 C 0.018 3.982 9 N -0.262 5.262 10 C 0.180 3.820 11 S -0.488 6.488 12 N -0.173 5.173 13 C -0.201 4.201 14 C -0.151 4.151 15 N -0.092 5.092 16 N 0.099 4.901 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.388 5.388 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.217 4.217 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.230 0.770 35 H 0.198 0.802 36 H 0.088 0.912 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.582 2.609 -9.160 18.262 hybrid contribution -1.302 -2.132 -0.914 2.661 sum -16.884 0.476 -10.074 19.667 Atomic orbital electron populations 1.23010 0.78362 1.03715 1.01338 1.86014 1.21428 1.26874 1.89225 1.18741 0.90237 0.84845 0.99869 1.20890 0.99462 0.91812 1.10668 1.20930 0.94820 0.96669 0.97978 1.20915 0.93349 0.98279 1.04338 1.21603 1.02752 0.89465 0.92460 1.16686 0.85972 0.86043 1.09460 1.41803 1.21645 1.15728 1.47014 1.22259 0.81902 0.91895 0.85902 1.93092 1.81015 1.26228 1.48483 1.41420 1.23367 1.15630 1.36868 1.16896 0.94559 0.96278 1.12390 1.24323 0.91966 0.99540 0.99231 1.78384 1.21882 0.87920 1.21050 1.44632 1.14212 1.06140 1.25131 1.19866 1.07941 0.91420 1.26288 0.86582 1.25665 0.97378 0.96682 0.97332 1.70210 1.22530 1.12935 1.33139 0.85878 0.79069 0.79515 0.79619 1.19118 1.20018 1.19094 1.21287 0.96699 0.98014 1.05681 0.92738 0.92595 0.88462 0.85523 0.86001 0.85514 0.82191 0.75923 0.76994 0.80154 0.91203 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.65 10.12 -19.68 -0.20 -3.85 16 3 C 0.11 1.40 6.70 -39.07 -0.26 1.13 16 4 C -0.21 -2.23 9.04 -39.46 -0.36 -2.59 16 5 C -0.08 -0.90 10.04 -39.57 -0.40 -1.29 16 6 C -0.15 -1.80 10.04 -39.58 -0.40 -2.20 16 7 C -0.04 -0.57 7.85 -39.41 -0.31 -0.88 16 8 C 0.11 1.62 6.04 -83.50 -0.50 1.12 16 9 N -0.63 -8.89 5.15 -11.28 -0.06 -8.95 16 10 C 0.54 9.52 7.75 -86.92 -0.67 8.84 16 11 S -0.62 -13.55 21.66 -107.50 -2.33 -15.88 16 12 N -0.56 -9.59 5.47 -11.54 -0.06 -9.65 16 13 C -0.09 -2.10 6.45 -83.84 -0.54 -2.64 16 14 C 0.03 0.74 10.04 -17.03 -0.17 0.57 16 15 N -0.26 -7.54 10.40 30.80 0.32 -7.22 16 16 N -0.14 -3.70 3.74 -11.41 -0.04 -3.74 16 17 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 18 H 0.12 2.69 7.83 -52.49 -0.41 2.27 16 19 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 20 N -0.76 -21.06 11.81 55.49 0.66 -20.40 16 21 Si 0.94 18.69 29.55 -169.99 -5.02 13.66 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.06 -1.45 11.49 -16.39 -0.19 -1.64 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.16 2.62 5.79 -37.59 -0.22 2.40 16 33 H 0.40 4.42 8.68 -40.82 -0.35 4.07 16 34 H 0.39 5.13 8.85 -40.82 -0.36 4.77 16 35 H 0.18 4.54 6.05 -43.63 -0.26 4.28 16 36 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -34.14 329.66 -8.39 -42.52 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -3.56 Total: 14.34 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.06 Total: -5.81 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.81 Total: -49.96 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: -13.55 SS G_CDS: -2.33 Total: -15.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.14 -8.39 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145476726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.570 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds