Wall clock time and date at job start Tue Mar 31 2020 12:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35982 * 117.00178 * 2 1 4 4 C 1.38543 * 120.08230 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.01812 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.17968 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.16580 * 359.97438 * 6 5 4 8 8 C 1.38727 * 119.97982 * 359.70194 * 7 6 5 9 9 N 1.40099 * 120.09102 * 180.26999 * 8 7 6 10 10 C 1.34775 * 119.99784 * 38.82068 * 9 8 7 11 11 S 1.71202 * 120.00205 * 2.95718 * 10 9 8 12 12 N 1.34779 * 119.99959 * 182.95129 * 10 9 8 13 13 C 1.40594 * 119.99967 * 184.59147 * 12 10 9 14 14 C 1.40659 * 126.08370 * 323.32753 * 13 12 10 15 15 N 1.30911 * 108.38826 * 179.81068 * 14 13 12 16 16 N 1.40074 * 108.40502 * 0.44058 * 15 14 13 17 17 C 1.37320 * 126.06734 * 179.69772 * 16 15 14 18 18 H 1.07999 * 120.00154 * 180.02562 * 17 16 15 19 19 C 1.38980 * 120.00245 * 0.02562 * 17 16 15 20 20 N 1.31303 * 119.99799 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00292 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46717 * 60.00498 * 21 19 17 23 23 H 1.48497 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46847 * 300.00722 * 21 19 17 25 25 C 1.35670 * 126.07829 * 143.62684 * 13 12 10 26 26 H 1.08996 * 109.47336 * 59.99684 * 1 2 3 27 27 H 1.09001 * 109.47143 * 300.00090 * 1 2 3 28 28 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08009 * 119.98896 * 359.95626 * 4 3 2 30 30 H 1.08000 * 119.91103 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.91758 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.00891 * 179.97438 * 7 6 5 33 33 H 0.97000 * 119.99963 * 218.82637 * 9 8 7 34 34 H 0.97002 * 120.00075 * 4.59831 * 12 10 9 35 35 H 1.07990 * 125.80309 * 359.96896 * 14 13 12 36 36 H 0.97007 * 119.99694 * 179.97438 * 20 19 17 37 37 H 1.08001 * 126.24930 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0005 5 6 1.9226 3.6057 0.0011 6 6 3.3032 3.6808 0.0005 7 6 4.0616 2.5254 0.0000 8 6 3.4374 1.2865 0.0062 9 7 4.2039 0.1138 0.0114 10 6 5.3342 0.0508 0.7428 11 16 5.7934 1.3760 1.7247 12 7 6.1029 -1.0555 0.7014 13 6 7.2291 -1.1606 1.5363 14 6 8.0979 -0.1129 1.8912 15 7 9.0229 -0.5937 2.6831 16 7 8.7882 -1.9638 2.8564 17 6 9.5446 -2.8241 3.6137 18 1 9.2732 -3.8674 3.6787 19 6 10.6592 -2.3522 4.2967 20 7 10.9889 -1.0837 4.2181 21 14 11.6885 -3.5227 5.3263 22 1 12.2288 -4.6003 4.4591 23 1 12.8121 -2.7773 5.9485 24 1 10.8425 -4.1207 6.3901 25 6 7.6745 -2.2918 2.1385 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2148 2.3195 0.0002 30 1 1.3340 4.5112 0.0019 31 1 3.7903 4.6448 0.0005 32 1 5.1398 2.5870 -0.0008 33 1 3.9211 -0.6527 -0.5114 34 1 5.8791 -1.7792 0.0954 35 1 8.0145 0.9140 1.5677 36 1 11.7667 -0.7542 4.6951 37 1 7.2290 -3.2728 2.0639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145476726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:26 Heat of formation + Delta-G solvation = 88.348569 kcal Electronic energy + Delta-G solvation = -23026.533103 eV Core-core repulsion = 19511.397987 eV Total energy + Delta-G solvation = -3515.135117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74378 -41.38729 -39.60157 -38.19211 -36.26734 -35.09463 -32.27765 -31.17255 -30.96598 -29.38777 -28.04233 -26.85263 -25.55711 -23.45911 -23.15762 -22.31324 -21.71425 -20.14172 -19.27528 -19.11616 -18.26363 -17.47474 -17.08197 -16.85667 -16.68588 -16.41662 -15.73608 -15.66502 -15.51032 -15.08863 -14.91184 -14.86811 -14.32407 -13.74231 -13.49880 -13.26706 -12.99055 -12.86405 -12.81269 -12.52143 -12.26492 -12.13778 -12.07213 -11.97808 -11.67480 -11.14483 -10.75773 -10.13422 -9.85282 -9.34577 -8.76809 -8.62697 -8.46334 -7.93923 -6.24171 -0.08942 0.54050 0.62583 0.94289 1.30934 1.39186 1.49699 1.57465 1.79200 2.13479 2.28876 2.42797 2.54197 2.88721 2.98756 3.09395 3.94509 4.04900 4.26919 4.38698 4.40730 4.44125 4.52952 4.56375 4.62287 4.76873 4.82103 4.92416 5.00542 5.20419 5.28011 5.29620 5.43649 5.59543 5.67765 5.85501 5.93423 6.00660 6.31786 6.42098 6.47270 6.76682 7.42951 7.67051 8.51861 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.002818 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.108271 B = 9934.365103 C =10554.130083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.206 4.206 5 C -0.073 4.073 6 C -0.160 4.160 7 C -0.057 4.057 8 C 0.076 3.924 9 N -0.605 5.605 10 C 0.566 3.434 11 S -0.706 6.706 12 N -0.547 5.547 13 C -0.077 4.077 14 C 0.012 3.988 15 N -0.314 5.314 16 N -0.166 5.166 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.004 4.004 20 N -0.820 5.820 21 Si 1.018 2.982 22 H -0.251 1.251 23 H -0.278 1.278 24 H -0.256 1.256 25 C -0.055 4.055 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.422 0.578 34 H 0.420 0.580 35 H 0.174 0.826 36 H 0.277 0.723 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 -0.166 -11.748 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.066 3.934 4 C -0.225 4.225 5 C -0.092 4.092 6 C -0.180 4.180 7 C -0.080 4.080 8 C -0.018 4.018 9 N -0.231 5.231 10 C 0.203 3.797 11 S -0.574 6.574 12 N -0.168 5.168 13 C -0.184 4.184 14 C -0.168 4.168 15 N -0.143 5.143 16 N 0.069 4.931 17 C -0.486 4.486 18 H 0.158 0.842 19 C -0.216 4.216 20 N -0.447 5.447 21 Si 0.837 3.163 22 H -0.175 1.175 23 H -0.203 1.203 24 H -0.180 1.180 25 C -0.208 4.208 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.263 0.737 34 H 0.261 0.739 35 H 0.191 0.809 36 H 0.087 0.913 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.951 0.882 -10.226 21.552 hybrid contribution -0.669 -1.509 -0.819 1.843 sum -19.620 -0.628 -11.045 22.524 Atomic orbital electron populations 1.23349 0.76013 1.05514 1.02518 1.85996 1.23825 1.26288 1.88908 1.18822 0.89576 0.86121 0.98859 1.21320 1.01087 0.91033 1.09099 1.21345 0.94153 0.98178 0.95508 1.21146 0.94451 0.98011 1.04364 1.21461 1.01811 0.90849 0.93854 1.16913 0.87039 0.85632 1.12180 1.41658 1.19809 1.16538 1.45118 1.21711 0.82672 0.90270 0.84999 1.93331 1.82555 1.29567 1.51988 1.41031 1.22265 1.16413 1.37070 1.16814 0.94914 0.94979 1.11713 1.24362 0.92717 1.00014 0.99702 1.78277 1.23685 0.89673 1.22676 1.44880 1.15808 1.05684 1.26754 1.20578 1.08662 0.92492 1.26889 0.84188 1.26867 0.98344 0.98284 0.98147 1.70396 1.23571 1.15535 1.35174 0.84670 0.76847 0.77038 0.77770 1.17498 1.20300 1.18006 1.22005 0.95349 0.99752 1.03718 0.90860 0.91983 0.86577 0.82236 0.82540 0.84396 0.84893 0.73712 0.73947 0.80882 0.91322 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.58 10.12 -93.35 -0.94 -7.53 16 3 C 0.11 2.59 6.70 22.60 0.15 2.74 16 4 C -0.21 -3.67 9.04 22.35 0.20 -3.47 16 5 C -0.07 -1.32 10.04 22.28 0.22 -1.09 16 6 C -0.16 -3.74 10.04 22.27 0.22 -3.51 16 7 C -0.06 -1.67 7.85 22.38 0.18 -1.49 16 8 C 0.08 2.12 6.04 38.19 0.23 2.35 16 9 N -0.60 -16.19 5.15 -189.62 -0.98 -17.17 16 10 C 0.57 19.82 7.75 179.05 1.39 21.21 16 11 S -0.71 -32.09 21.66 -56.49 -1.22 -33.31 16 12 N -0.55 -18.23 5.47 -190.41 -1.04 -19.27 16 13 C -0.08 -3.43 6.45 37.73 0.24 -3.19 16 14 C 0.01 0.62 10.04 85.42 0.86 1.48 16 15 N -0.31 -18.79 10.40 -56.46 -0.59 -19.38 16 16 N -0.17 -9.11 3.74 -190.01 -0.71 -9.82 16 17 C -0.36 -18.70 10.25 84.01 0.86 -17.84 16 18 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 19 C 0.00 -0.21 5.50 84.95 0.47 0.25 16 20 N -0.82 -47.40 11.81 21.66 0.26 -47.14 16 21 Si 1.02 38.59 29.55 68.60 2.03 40.62 16 22 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 23 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 25 C -0.05 -2.50 11.49 83.37 0.96 -1.54 16 26 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 27 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.16 1.76 6.30 -2.91 -0.02 1.75 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.13 4.64 5.79 -12.39 -0.07 4.57 16 33 H 0.42 8.24 8.68 -92.71 -0.80 7.44 16 34 H 0.42 9.83 8.85 -92.71 -0.82 9.01 16 35 H 0.17 9.34 6.05 -8.55 -0.05 9.29 16 36 H 0.28 14.80 8.31 -92.70 -0.77 14.03 16 37 H 0.19 6.63 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -80.15 329.66 3.33 -76.82 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.56 Total: 38.97 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 7.10 Total: -2.79 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.06 Total: -112.78 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.94 Total: -7.53 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: -32.09 SS G_CDS: -1.22 Total: -33.31 kcal Total: -80.15 3.33 -76.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145476726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.170 kcal (2) G-P(sol) polarization free energy of solvation -80.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds