Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47171 * 2 1 4 4 C 1.50702 * 109.47132 * 240.00114 * 2 1 3 5 5 H 1.08004 * 119.99838 * 271.90057 * 4 2 1 6 6 C 1.37877 * 120.00370 * 91.89879 * 4 2 1 7 7 N 1.31513 * 120.00195 * 177.20629 * 6 4 2 8 8 Si 1.86803 * 119.99581 * 357.20785 * 6 4 2 9 9 H 1.48503 * 109.47181 * 84.75935 * 8 6 4 10 10 H 1.48499 * 109.46736 * 204.75981 * 8 6 4 11 11 H 1.48500 * 109.47474 * 324.75654 * 8 6 4 12 12 N 1.46497 * 109.47145 * 119.99972 * 2 1 3 13 13 C 1.46503 * 120.00212 * 59.99801 * 12 2 1 14 14 C 1.34774 * 120.00044 * 240.00312 * 12 2 1 15 15 O 1.21630 * 119.99944 * 354.43884 * 14 12 2 16 16 C 1.47351 * 120.00123 * 174.71857 * 14 12 2 17 17 C 1.36308 * 122.54913 * 173.41766 * 16 14 12 18 18 S 1.71022 * 108.98587 * 180.02562 * 17 16 14 19 19 C 1.75974 * 90.62181 * 359.97438 * 18 17 16 20 20 C 1.47903 * 125.22494 * 179.97438 * 19 18 17 21 21 C 1.39638 * 120.12340 * 359.70139 * 20 19 18 22 22 N 1.31957 * 119.84955 * 179.77759 * 21 20 19 23 23 C 1.32242 * 120.10489 * 0.50308 * 22 21 20 24 24 C 1.38456 * 120.24900 * 359.72326 * 23 22 21 25 25 N 1.31989 * 120.14716 * 0.03083 * 24 23 22 26 26 N 1.29781 * 109.54447 * 359.73726 * 19 18 17 27 27 H 1.08994 * 109.47234 * 294.40095 * 1 2 3 28 28 H 1.09001 * 109.46562 * 54.39572 * 1 2 3 29 29 H 1.08994 * 109.46850 * 174.39384 * 1 2 3 30 30 H 0.96992 * 119.99906 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46879 * 264.96442 * 13 12 2 32 32 H 1.09002 * 109.46698 * 24.95643 * 13 12 2 33 33 H 1.08990 * 109.47125 * 144.95515 * 13 12 2 34 34 H 1.07999 * 125.51221 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.07664 * 359.97438 * 21 20 19 36 36 H 1.07994 * 119.87220 * 179.71239 * 23 22 21 37 37 H 1.07992 * 119.92646 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1831 -1.7797 -1.2130 6 6 2.2995 0.0047 -2.3787 7 7 2.7898 -0.6065 -3.4349 8 14 1.9650 1.8417 -2.4339 9 1 3.1282 2.5738 -1.8715 10 1 1.7481 2.2631 -3.8412 11 1 0.7527 2.1484 -1.6330 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.1706 1.0953 1.8426 16 6 3.1881 -0.6918 3.3421 17 6 4.0735 -0.1322 4.2145 18 16 4.2793 -1.1823 5.5486 19 6 3.1451 -2.3293 4.8452 20 6 2.7496 -3.6190 5.4517 21 6 3.2917 -4.0128 6.6769 22 7 2.9316 -5.1624 7.2152 23 6 2.0670 -5.9450 6.5917 24 6 1.5304 -5.5609 5.3745 25 7 1.8799 -4.4108 4.8293 26 7 2.7054 -1.8675 3.7149 27 1 -0.3633 0.4245 0.9358 28 1 -0.3632 0.5983 -0.8356 29 1 -0.3633 -1.0227 -0.1004 30 1 2.9781 -0.1034 -4.2425 31 1 0.7882 -2.1447 2.0742 32 1 1.4421 -2.5740 0.4754 33 1 2.4996 -2.6042 1.9068 34 1 4.5661 0.8199 4.0840 35 1 4.0016 -3.3764 7.1842 36 1 1.7785 -6.8872 7.0335 37 1 0.8244 -6.2037 4.8700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171549619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = 81.555946 kcal Electronic energy + Delta-G solvation = -23550.171352 eV Core-core repulsion = 20034.741685 eV Total energy + Delta-G solvation = -3515.429667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40773 -40.26753 -38.20531 -35.47739 -34.71726 -32.93741 -32.55995 -30.42598 -29.87602 -26.56152 -26.05860 -25.28495 -25.03591 -24.47116 -21.81821 -20.11446 -19.32100 -17.93627 -17.53447 -17.41262 -16.99468 -16.75718 -15.81717 -15.68473 -15.38353 -14.87116 -14.71094 -14.17459 -13.70866 -13.56097 -13.20803 -13.04747 -12.49390 -12.37712 -12.22865 -12.07399 -11.95516 -11.71593 -11.67012 -11.33734 -11.12924 -10.61376 -10.35631 -10.33397 -9.89236 -9.75845 -9.65968 -9.51925 -9.23506 -9.17445 -8.70865 -8.60948 -7.61310 -6.13309 -4.15126 -0.28415 0.60480 0.86952 0.88915 1.34141 2.18530 3.28963 3.32858 3.36128 3.39500 3.44576 3.75077 3.79203 3.85697 3.97330 4.12886 4.40826 4.57038 4.79447 4.87863 4.99975 5.11797 5.16257 5.28799 5.67846 5.88661 6.16182 6.32144 6.35907 6.46108 6.61182 6.73026 6.81137 6.94696 7.10233 7.25338 7.40545 7.53444 7.65715 8.15447 8.50745 8.83884 8.90560 9.48608 10.98756 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.003571 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.328732 B = 7839.248114 C = 8729.278907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.225 3.775 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.080 0.920 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.564 5.564 13 C 0.096 3.904 14 C 0.573 3.427 15 O -0.550 6.550 16 C 0.024 3.976 17 C -0.203 4.203 18 S 0.186 5.814 19 C 0.061 3.939 20 C 0.156 3.844 21 C 0.069 3.931 22 N -0.430 5.430 23 C 0.051 3.949 24 C 0.064 3.936 25 N -0.399 5.399 26 N -0.378 5.378 27 H 0.026 0.974 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.196 0.804 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -8.485 22.927 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.124 3.876 3 H 0.079 0.921 4 C -0.563 4.563 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.293 5.293 13 C -0.048 4.048 14 C 0.357 3.643 15 O -0.430 6.430 16 C -0.113 4.113 17 C -0.345 4.345 18 S 0.443 5.557 19 C -0.216 4.216 20 C 0.014 3.986 21 C -0.094 4.094 22 N -0.144 5.144 23 C -0.110 4.110 24 C -0.098 4.098 25 N -0.114 5.114 26 N -0.094 5.094 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.213 0.787 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.472 -8.119 23.145 24.533 hybrid contribution -0.372 1.244 -1.071 1.683 sum 0.100 -6.875 22.075 23.120 Atomic orbital electron populations 1.22284 0.98151 1.01201 0.99191 1.19297 0.90783 0.94687 0.82793 0.92057 1.21121 1.44900 0.96386 0.93844 0.90250 1.24926 0.93631 0.98337 0.95513 1.69888 1.42951 1.36619 1.03465 0.86960 0.80090 0.85997 0.77085 1.19609 1.21328 1.18557 1.48139 1.47029 1.12414 1.21686 1.21824 1.00580 0.81461 1.00903 1.17153 0.79988 0.85398 0.81771 1.90760 1.56248 1.18763 1.77228 1.20936 0.99305 0.91694 0.99367 1.27013 1.03426 1.06529 0.97572 1.83499 1.40911 1.10478 1.20851 1.25332 1.02026 0.98734 0.95460 1.19508 0.95008 0.91706 0.92374 1.23602 0.98713 0.94421 0.92667 1.68479 1.10382 1.03173 1.32359 1.23963 0.93306 0.99999 0.93698 1.23963 0.98533 0.93287 0.94039 1.68559 1.08418 1.02885 1.31586 1.67346 1.21727 1.09721 1.10578 0.95508 0.92360 0.92912 0.92418 0.93436 0.90990 0.90762 0.78709 0.81334 0.80736 0.80453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.94 37.16 0.33 -2.96 16 2 C 0.23 5.64 2.21 -69.08 -0.15 5.49 16 3 H 0.06 1.66 4.59 -51.93 -0.24 1.42 16 4 C -0.52 -14.85 8.69 -34.44 -0.30 -15.15 16 5 H 0.08 2.39 6.91 -52.48 -0.36 2.03 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.87 22.21 26.37 -169.99 -4.48 17.73 16 9 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.31 6.03 56.52 0.34 -5.97 16 12 N -0.56 -12.82 2.75 -176.56 -0.49 -13.30 16 13 C 0.10 1.88 8.30 59.85 0.50 2.38 16 14 C 0.57 12.65 7.64 -12.55 -0.10 12.55 16 15 O -0.55 -13.59 16.04 5.25 0.08 -13.50 16 16 C 0.02 0.42 6.42 -84.59 -0.54 -0.12 16 17 C -0.20 -2.77 10.63 30.04 0.32 -2.45 16 18 S 0.19 1.80 22.11 -107.50 -2.38 -0.57 16 19 C 0.06 0.78 7.39 -14.46 -0.11 0.67 16 20 C 0.16 1.78 6.75 -82.85 -0.56 1.22 16 21 C 0.07 0.61 10.78 -16.98 -0.18 0.43 16 22 N -0.43 -3.82 10.49 -12.73 -0.13 -3.96 16 23 C 0.05 0.35 11.22 -17.29 -0.19 0.15 16 24 C 0.06 0.51 11.22 -17.40 -0.20 0.31 16 25 N -0.40 -4.76 10.41 -9.66 -0.10 -4.86 16 26 N -0.38 -6.11 6.81 -7.89 -0.05 -6.16 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.28 6.61 -51.93 -0.34 0.94 16 29 H 0.05 1.10 7.86 -51.93 -0.41 0.69 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.07 1.48 6.64 -51.93 -0.34 1.13 16 33 H 0.07 1.42 5.82 -51.93 -0.30 1.12 16 34 H 0.20 2.42 8.02 -52.49 -0.42 2.00 16 35 H 0.17 1.07 7.28 -52.49 -0.38 0.69 16 36 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -35.59 329.21 -6.78 -42.37 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.69 Total: -0.96 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.28 Total: 4.75 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.00 Total: -54.77 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.48 Total: 17.73 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.59 -6.78 -42.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171549619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.926 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds