Wall clock time and date at job start Tue Mar 31 2020 12:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47171 * 2 1 4 4 C 1.50702 * 109.47132 * 240.00114 * 2 1 3 5 5 H 1.08004 * 119.99838 * 271.90057 * 4 2 1 6 6 C 1.37877 * 120.00370 * 91.89879 * 4 2 1 7 7 N 1.31513 * 120.00195 * 177.20629 * 6 4 2 8 8 Si 1.86803 * 119.99581 * 357.20785 * 6 4 2 9 9 H 1.48503 * 109.47181 * 84.75935 * 8 6 4 10 10 H 1.48499 * 109.46736 * 204.75981 * 8 6 4 11 11 H 1.48500 * 109.47474 * 324.75654 * 8 6 4 12 12 N 1.46497 * 109.47145 * 119.99972 * 2 1 3 13 13 C 1.46503 * 120.00212 * 59.99801 * 12 2 1 14 14 C 1.34774 * 120.00044 * 240.00312 * 12 2 1 15 15 O 1.21630 * 119.99944 * 354.43884 * 14 12 2 16 16 C 1.47351 * 120.00123 * 174.71857 * 14 12 2 17 17 C 1.36308 * 122.54913 * 173.41766 * 16 14 12 18 18 S 1.71022 * 108.98587 * 180.02562 * 17 16 14 19 19 C 1.75974 * 90.62181 * 359.97438 * 18 17 16 20 20 C 1.47903 * 125.22494 * 179.97438 * 19 18 17 21 21 C 1.39638 * 120.12340 * 359.70139 * 20 19 18 22 22 N 1.31957 * 119.84955 * 179.77759 * 21 20 19 23 23 C 1.32242 * 120.10489 * 0.50308 * 22 21 20 24 24 C 1.38456 * 120.24900 * 359.72326 * 23 22 21 25 25 N 1.31989 * 120.14716 * 0.03083 * 24 23 22 26 26 N 1.29781 * 109.54447 * 359.73726 * 19 18 17 27 27 H 1.08994 * 109.47234 * 294.40095 * 1 2 3 28 28 H 1.09001 * 109.46562 * 54.39572 * 1 2 3 29 29 H 1.08994 * 109.46850 * 174.39384 * 1 2 3 30 30 H 0.96992 * 119.99906 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46879 * 264.96442 * 13 12 2 32 32 H 1.09002 * 109.46698 * 24.95643 * 13 12 2 33 33 H 1.08990 * 109.47125 * 144.95515 * 13 12 2 34 34 H 1.07999 * 125.51221 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.07664 * 359.97438 * 21 20 19 36 36 H 1.07994 * 119.87220 * 179.71239 * 23 22 21 37 37 H 1.07992 * 119.92646 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1831 -1.7797 -1.2130 6 6 2.2995 0.0047 -2.3787 7 7 2.7898 -0.6065 -3.4349 8 14 1.9650 1.8417 -2.4339 9 1 3.1282 2.5738 -1.8715 10 1 1.7481 2.2631 -3.8412 11 1 0.7527 2.1484 -1.6330 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.1706 1.0953 1.8426 16 6 3.1881 -0.6918 3.3421 17 6 4.0735 -0.1322 4.2145 18 16 4.2793 -1.1823 5.5486 19 6 3.1451 -2.3293 4.8452 20 6 2.7496 -3.6190 5.4517 21 6 3.2917 -4.0128 6.6769 22 7 2.9316 -5.1624 7.2152 23 6 2.0670 -5.9450 6.5917 24 6 1.5304 -5.5609 5.3745 25 7 1.8799 -4.4108 4.8293 26 7 2.7054 -1.8675 3.7149 27 1 -0.3633 0.4245 0.9358 28 1 -0.3632 0.5983 -0.8356 29 1 -0.3633 -1.0227 -0.1004 30 1 2.9781 -0.1034 -4.2425 31 1 0.7882 -2.1447 2.0742 32 1 1.4421 -2.5740 0.4754 33 1 2.4996 -2.6042 1.9068 34 1 4.5661 0.8199 4.0840 35 1 4.0016 -3.3764 7.1842 36 1 1.7785 -6.8872 7.0335 37 1 0.8244 -6.2037 4.8700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171549619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:20 Heat of formation + Delta-G solvation = 54.952193 kcal Electronic energy + Delta-G solvation = -23551.324977 eV Core-core repulsion = 20034.741685 eV Total energy + Delta-G solvation = -3516.583292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11433 -41.54952 -39.67077 -37.30461 -35.41383 -34.72404 -33.66079 -32.27231 -30.90480 -27.71133 -27.51666 -27.28668 -26.00266 -25.40154 -23.09747 -21.60435 -20.44508 -19.48387 -18.99523 -18.26940 -18.11845 -17.74678 -17.19242 -17.14721 -16.64812 -16.26549 -15.90105 -15.43235 -14.92778 -14.84558 -14.54884 -14.42242 -14.23300 -13.92921 -13.86204 -13.35955 -13.32968 -13.16369 -12.85343 -12.63116 -12.60783 -12.41790 -12.26187 -11.81667 -11.35036 -11.19914 -11.15636 -10.84977 -10.69635 -10.48465 -10.16554 -9.67655 -9.35236 -8.38239 -6.43684 -1.10423 -0.15943 -0.02612 0.09354 0.33377 1.03040 1.27989 1.33370 1.40968 2.15484 2.26461 2.28654 2.52478 2.74007 3.02149 3.18614 3.26039 3.43009 3.63873 3.95100 4.06877 4.14736 4.34458 4.39917 4.48963 4.50553 4.60833 4.65851 4.69530 4.86185 5.05918 5.14006 5.29508 5.31172 5.49853 5.73198 6.07654 6.17635 6.36961 6.60102 6.62856 6.72610 7.12672 7.25868 8.77328 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.003571 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.328732 B = 7839.248114 C = 8729.278907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.226 3.774 3 H 0.042 0.958 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.928 3.072 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.240 1.240 12 N -0.578 5.578 13 C 0.112 3.888 14 C 0.566 3.434 15 O -0.589 6.589 16 C -0.010 4.010 17 C -0.214 4.214 18 S 0.318 5.682 19 C 0.047 3.953 20 C 0.127 3.873 21 C 0.077 3.923 22 N -0.447 5.447 23 C 0.070 3.930 24 C 0.059 3.941 25 N -0.439 5.439 26 N -0.414 5.414 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.203 0.797 35 H 0.192 0.808 36 H 0.216 0.784 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -9.232 26.428 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.123 3.877 3 H 0.060 0.940 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.575 5.575 8 Si 0.752 3.248 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.163 1.163 12 N -0.306 5.306 13 C -0.031 4.031 14 C 0.353 3.647 15 O -0.472 6.472 16 C -0.147 4.147 17 C -0.357 4.357 18 S 0.576 5.424 19 C -0.229 4.229 20 C -0.014 4.014 21 C -0.085 4.085 22 N -0.160 5.160 23 C -0.091 4.091 24 C -0.103 4.103 25 N -0.156 5.156 26 N -0.130 5.130 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.220 0.780 35 H 0.209 0.791 36 H 0.232 0.768 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.280 -8.878 26.686 28.126 hybrid contribution -0.243 1.246 -1.913 2.296 sum 0.038 -7.632 24.773 25.922 Atomic orbital electron populations 1.22135 0.95639 1.01933 1.00212 1.19117 0.92638 0.93343 0.82561 0.93995 1.21312 1.44398 0.95183 0.95410 0.93417 1.25680 0.93692 1.02645 0.95205 1.70000 1.44795 1.38405 1.04256 0.86071 0.80260 0.80649 0.77844 1.20826 1.19981 1.16326 1.48113 1.47727 1.13407 1.21380 1.21746 1.01366 0.79936 1.00030 1.17773 0.78771 0.85127 0.83050 1.90706 1.57506 1.20402 1.78549 1.20260 1.02392 0.93358 0.98664 1.27315 1.02061 1.07527 0.98822 1.82984 1.36999 1.06121 1.16332 1.25753 1.02295 0.99774 0.95044 1.19561 0.96628 0.91665 0.93572 1.23857 0.98342 0.94689 0.91601 1.68595 1.11293 1.03420 1.32739 1.24627 0.91200 1.00564 0.92739 1.24507 0.98740 0.92442 0.94601 1.68464 1.09400 1.04507 1.33183 1.67194 1.23418 1.09627 1.12740 0.93552 0.92337 0.92171 0.92161 0.92017 0.92747 0.90232 0.78047 0.79092 0.76754 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.94 71.98 0.64 -5.51 16 2 C 0.23 11.56 2.21 44.25 0.10 11.66 16 3 H 0.04 2.32 4.59 -2.38 -0.01 2.31 16 4 C -0.52 -30.85 8.69 25.60 0.22 -30.62 16 5 H 0.05 3.04 6.91 -2.91 -0.02 3.02 16 6 C 0.03 1.63 5.47 84.65 0.46 2.10 16 7 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 8 Si 0.93 46.65 26.37 68.60 1.81 48.45 16 9 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.24 -11.13 6.03 99.48 0.60 -10.53 16 12 N -0.58 -27.07 2.75 -830.74 -2.29 -29.36 16 13 C 0.11 4.54 8.30 127.77 1.06 5.60 16 14 C 0.57 25.74 7.64 86.64 0.66 26.41 16 15 O -0.59 -30.07 16.04 -4.13 -0.07 -30.14 16 16 C -0.01 -0.34 6.42 41.00 0.26 -0.07 16 17 C -0.21 -5.59 10.63 67.37 0.72 -4.87 16 18 S 0.32 5.17 22.11 -56.49 -1.25 3.92 16 19 C 0.05 1.14 7.39 87.56 0.65 1.79 16 20 C 0.13 2.66 6.75 41.86 0.28 2.95 16 21 C 0.08 1.15 10.78 85.01 0.92 2.07 16 22 N -0.45 -6.47 10.49 -194.20 -2.04 -8.51 16 23 C 0.07 0.70 11.22 84.68 0.95 1.65 16 24 C 0.06 0.80 11.22 84.72 0.95 1.75 16 25 N -0.44 -9.92 10.41 -184.46 -1.92 -11.84 16 26 N -0.41 -13.30 6.81 -178.87 -1.22 -14.52 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.52 6.61 -2.39 -0.02 2.50 16 29 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 32 H 0.05 2.34 6.64 -2.39 -0.02 2.33 16 33 H 0.08 3.16 5.82 -2.39 -0.01 3.15 16 34 H 0.20 4.82 8.02 -2.91 -0.02 4.80 16 35 H 0.19 1.69 7.28 -2.91 -0.02 1.67 16 36 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -81.88 329.21 2.22 -79.65 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.02 Total: 6.17 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 7.88 Total: 14.89 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -7.16 Total: -122.96 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.07 Total: -30.14 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.81 Total: 48.45 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.25 Total: 3.92 kcal Total: -81.88 2.22 -79.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171549619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.607 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds