Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47363 * 2 1 4 4 N 1.46498 * 109.47090 * 240.00454 * 2 1 3 5 5 C 1.34774 * 120.00348 * 85.00196 * 4 2 1 6 6 O 1.21549 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.47867 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.39669 * 120.09925 * 0.02562 * 7 5 4 9 9 C 1.38043 * 120.03800 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.24168 * 359.75416 * 9 8 7 11 11 C 1.39179 * 120.20357 * 0.50266 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.76778 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46950 * 90.00202 * 17 15 13 19 19 H 1.48495 * 109.46650 * 209.99961 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99842 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.49916 * 11 10 9 22 22 C 1.50701 * 109.47266 * 120.00235 * 2 1 3 23 23 N 1.33243 * 125.52572 * 74.68853 * 22 2 1 24 24 C 1.30828 * 109.82615 * 179.85917 * 23 22 2 25 25 N 1.34429 * 108.08070 * 0.40498 * 24 23 22 26 26 H 0.96999 * 126.82550 * 179.79639 * 25 24 23 27 27 N 1.30712 * 125.52713 * 254.99953 * 22 2 1 28 28 H 1.09000 * 109.47173 * 300.00138 * 1 2 3 29 29 H 1.09000 * 109.47122 * 59.99756 * 1 2 3 30 30 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 31 31 H 0.97008 * 119.99747 * 264.99997 * 4 2 1 32 32 H 1.08002 * 119.98588 * 359.96545 * 8 7 5 33 33 H 1.08000 * 119.87868 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.89464 * 180.25271 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.12436 * 180.27334 * 21 11 10 37 37 H 1.08001 * 125.96374 * 180.19734 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6394 -0.7153 -3.5646 8 6 2.9711 -2.0707 -3.5046 9 6 3.4301 -2.7204 -4.6327 10 6 3.5588 -2.0359 -5.8261 11 6 3.2362 -0.6838 -5.8961 12 16 3.4078 0.1858 -7.4188 13 6 5.0184 0.8669 -7.2024 14 1 5.6035 0.6042 -6.3335 15 6 5.5349 1.7405 -8.1483 16 7 4.8221 2.0601 -9.2075 17 14 7.2428 2.4620 -7.9191 18 1 8.2458 1.5717 -8.5566 19 1 7.3013 3.8051 -8.5497 20 1 7.5387 2.5826 -6.4689 21 6 2.7736 -0.0219 -4.7662 22 6 2.0323 -0.7105 1.2304 23 7 2.0205 -2.0290 1.4222 24 6 2.5312 -2.3116 2.5931 25 7 2.8778 -1.1565 3.1869 26 1 3.2787 -1.0511 4.0639 27 7 2.5451 -0.1328 2.2849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8686 -2.6108 -2.5749 33 1 3.6855 -3.7686 -4.5835 34 1 3.9146 -2.5508 -6.7063 35 1 5.1832 2.6713 -9.8687 36 1 2.5183 1.0262 -4.8185 37 1 2.6502 -3.3003 3.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175261420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = 73.909401 kcal Electronic energy + Delta-G solvation = -22630.872428 eV Core-core repulsion = 19115.111182 eV Total energy + Delta-G solvation = -3515.761246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.59566 -39.96751 -37.90525 -35.80716 -32.85863 -32.47857 -32.14089 -31.03510 -30.50626 -29.57795 -25.53987 -24.96030 -23.35778 -23.15677 -22.19409 -20.55466 -20.23266 -18.88256 -18.24603 -17.33831 -16.33032 -16.01911 -15.70723 -15.36389 -15.12922 -14.82805 -14.77994 -14.25674 -13.98139 -13.65722 -13.36970 -13.14930 -12.87206 -12.60521 -12.30171 -12.22069 -11.65756 -11.52013 -11.12244 -11.09598 -11.05301 -10.67453 -10.61722 -10.54190 -10.21576 -9.94178 -9.74452 -9.23024 -9.13535 -8.97366 -8.54684 -7.98735 -6.67888 -6.25703 -3.99295 1.12486 1.20846 1.71661 2.14659 2.36644 3.05474 3.16521 3.22535 3.25685 3.30747 3.50618 3.57928 4.12711 4.23190 4.30005 4.54434 4.84562 5.01566 5.09318 5.10653 5.17476 5.29400 5.42822 5.50918 5.68758 5.71800 5.79431 5.83039 5.92063 6.03556 6.04608 6.29832 6.33849 6.54936 6.63787 6.68879 6.97538 7.23722 7.52888 7.58982 7.60624 8.30180 8.35806 9.20216 10.81039 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002776 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.181558 B =10083.372655 C =10443.109466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.112 0.888 4 N -0.721 5.721 5 C 0.568 3.432 6 O -0.532 6.532 7 C -0.153 4.153 8 C -0.088 4.088 9 C -0.141 4.141 10 C -0.055 4.055 11 C -0.108 4.108 12 S -0.035 6.035 13 C -0.519 4.519 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.870 5.870 17 Si 0.920 3.080 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.018 4.018 22 C 0.224 3.776 23 N -0.537 5.537 24 C 0.264 3.736 25 N -0.483 5.483 26 H 0.443 0.557 27 N -0.301 5.301 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.269 0.731 36 H 0.140 0.860 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 -11.958 23.715 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.133 3.867 3 H 0.130 0.870 4 N -0.376 5.376 5 C 0.357 3.643 6 O -0.409 6.409 7 C -0.158 4.158 8 C -0.107 4.107 9 C -0.161 4.161 10 C -0.076 4.076 11 C -0.218 4.218 12 S 0.200 5.800 13 C -0.666 4.666 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.506 5.506 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.039 4.039 22 C -0.060 4.060 23 N -0.265 5.265 24 C -0.035 4.035 25 N -0.201 5.201 26 H 0.289 0.711 27 N -0.130 5.130 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.158 0.842 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.107 -10.317 22.360 25.372 hybrid contribution 2.381 -0.449 2.145 3.236 sum -3.727 -10.766 24.505 27.024 Atomic orbital electron populations 1.22139 0.92884 1.03200 1.03308 1.18946 0.94543 0.95670 0.77559 0.87041 1.45834 1.68621 1.14557 1.08583 1.18405 0.76816 0.86347 0.82759 1.90777 1.49790 1.15484 1.84847 1.19801 1.07466 0.94631 0.93941 1.21173 0.97984 0.93233 0.98300 1.21054 1.02145 0.99887 0.93012 1.21958 0.94249 0.93914 0.97460 1.22836 1.00631 0.96894 1.01462 1.83594 1.24477 1.60820 1.11146 1.22840 0.99772 1.32391 1.11630 0.90631 1.24998 0.98742 0.95234 0.94598 1.69986 1.37102 1.33474 1.10020 0.86126 0.82214 0.78345 0.78681 1.20193 1.20660 1.19564 1.21948 0.91902 1.00205 0.89868 1.24304 0.96993 0.88842 0.95864 1.70345 1.23926 1.14875 1.17366 1.26157 0.93824 0.93730 0.89758 1.48163 1.48958 1.04767 1.18226 0.71080 1.78070 1.21446 1.11549 1.01922 0.91515 0.90385 0.91478 0.75652 0.86384 0.85855 0.85094 0.92078 0.84247 0.75840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.47 37.16 0.35 -1.29 16 2 C 0.24 2.90 3.12 -69.08 -0.22 2.68 16 3 H 0.11 1.50 7.58 -51.93 -0.39 1.11 16 4 N -0.72 -9.33 5.02 -55.87 -0.28 -9.61 16 5 C 0.57 9.44 7.74 -12.32 -0.10 9.34 16 6 O -0.53 -10.53 16.01 5.32 0.09 -10.44 16 7 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 8 C -0.09 -1.26 9.54 -39.12 -0.37 -1.63 16 9 C -0.14 -2.07 10.02 -39.68 -0.40 -2.47 16 10 C -0.05 -0.99 9.79 -39.25 -0.38 -1.38 16 11 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 12 S -0.03 -0.91 21.40 -107.50 -2.30 -3.21 16 13 C -0.52 -14.79 9.46 30.92 0.29 -14.50 16 14 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 15 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 16 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 17 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.02 -0.36 9.34 -38.92 -0.36 -0.73 16 22 C 0.22 2.48 6.93 -156.85 -1.09 1.39 16 23 N -0.54 -5.06 10.87 -11.98 -0.13 -5.19 16 24 C 0.26 1.46 13.13 -90.66 -1.19 0.27 16 25 N -0.48 -2.94 7.45 29.53 0.22 -2.72 16 26 H 0.44 1.00 8.96 -182.34 -1.63 -0.64 16 27 N -0.30 -3.23 12.80 32.42 0.41 -2.82 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 4.59 6.37 -40.82 -0.26 4.33 16 32 H 0.12 1.27 6.40 -52.49 -0.34 0.94 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 37 H 0.23 0.05 8.06 -52.49 -0.42 -0.37 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -35.99 344.64 -10.58 -46.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.11 Total: 2.63 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.39 Total: -12.13 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.96 Total: -45.27 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.99 -10.58 -46.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175261420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.480 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds