Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47363 * 2 1 4 4 N 1.46498 * 109.47090 * 240.00454 * 2 1 3 5 5 C 1.34774 * 120.00348 * 85.00196 * 4 2 1 6 6 O 1.21549 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.47867 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.39669 * 120.09925 * 0.02562 * 7 5 4 9 9 C 1.38043 * 120.03800 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.24168 * 359.75416 * 9 8 7 11 11 C 1.39179 * 120.20357 * 0.50266 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.76778 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46950 * 90.00202 * 17 15 13 19 19 H 1.48495 * 109.46650 * 209.99961 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99842 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.49916 * 11 10 9 22 22 C 1.50701 * 109.47266 * 120.00235 * 2 1 3 23 23 N 1.33243 * 125.52572 * 74.68853 * 22 2 1 24 24 C 1.30828 * 109.82615 * 179.85917 * 23 22 2 25 25 N 1.34429 * 108.08070 * 0.40498 * 24 23 22 26 26 H 0.96999 * 126.82550 * 179.79639 * 25 24 23 27 27 N 1.30712 * 125.52713 * 254.99953 * 22 2 1 28 28 H 1.09000 * 109.47173 * 300.00138 * 1 2 3 29 29 H 1.09000 * 109.47122 * 59.99756 * 1 2 3 30 30 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 31 31 H 0.97008 * 119.99747 * 264.99997 * 4 2 1 32 32 H 1.08002 * 119.98588 * 359.96545 * 8 7 5 33 33 H 1.08000 * 119.87868 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.89464 * 180.25271 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.12436 * 180.27334 * 21 11 10 37 37 H 1.08001 * 125.96374 * 180.19734 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6394 -0.7153 -3.5646 8 6 2.9711 -2.0707 -3.5046 9 6 3.4301 -2.7204 -4.6327 10 6 3.5588 -2.0359 -5.8261 11 6 3.2362 -0.6838 -5.8961 12 16 3.4078 0.1858 -7.4188 13 6 5.0184 0.8669 -7.2024 14 1 5.6035 0.6042 -6.3335 15 6 5.5349 1.7405 -8.1483 16 7 4.8221 2.0601 -9.2075 17 14 7.2428 2.4620 -7.9191 18 1 8.2458 1.5717 -8.5566 19 1 7.3013 3.8051 -8.5497 20 1 7.5387 2.5826 -6.4689 21 6 2.7736 -0.0219 -4.7662 22 6 2.0323 -0.7105 1.2304 23 7 2.0205 -2.0290 1.4222 24 6 2.5312 -2.3116 2.5931 25 7 2.8778 -1.1565 3.1869 26 1 3.2787 -1.0511 4.0639 27 7 2.5451 -0.1328 2.2849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8686 -2.6108 -2.5749 33 1 3.6855 -3.7686 -4.5835 34 1 3.9146 -2.5508 -6.7063 35 1 5.1832 2.6713 -9.8687 36 1 2.5183 1.0262 -4.8185 37 1 2.6502 -3.3003 3.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175261420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = 49.130102 kcal Electronic energy + Delta-G solvation = -22631.946939 eV Core-core repulsion = 19115.111182 eV Total energy + Delta-G solvation = -3516.835757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.20021 -41.27193 -39.25977 -36.90794 -34.64789 -33.73336 -32.94147 -32.07696 -31.86698 -30.62959 -27.73691 -25.97729 -24.48242 -23.78628 -23.55194 -21.66729 -21.26575 -20.01753 -19.43553 -18.89667 -17.48204 -17.03932 -16.92844 -16.64693 -16.56858 -16.09949 -16.03083 -15.55148 -15.30780 -14.85446 -14.66136 -14.58237 -14.13548 -13.74946 -13.28080 -13.21194 -13.13349 -13.08132 -12.96225 -12.64786 -12.47167 -12.38260 -11.74377 -11.32162 -11.22083 -11.17377 -11.09808 -10.85712 -10.74358 -10.38391 -9.91761 -9.69072 -8.79333 -8.38659 -6.18338 -0.18353 0.26970 0.55389 1.29645 1.37515 1.45975 1.55019 1.65548 1.76946 1.80929 2.15847 2.25799 2.80273 2.94303 2.94873 3.42714 3.60794 3.62672 3.95786 4.04423 4.07473 4.19746 4.23663 4.37753 4.48394 4.59155 4.67326 4.82853 4.93823 5.06532 5.14631 5.22082 5.24135 5.27379 5.33989 5.39292 5.51638 5.87123 6.16465 6.22438 6.40096 6.98485 7.01760 7.08039 8.68453 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002776 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.181558 B =10083.372655 C =10443.109466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.238 3.762 3 H 0.089 0.911 4 N -0.699 5.699 5 C 0.568 3.432 6 O -0.574 6.574 7 C -0.156 4.156 8 C -0.063 4.063 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.129 4.129 12 S -0.093 6.093 13 C -0.536 4.536 14 H 0.067 0.933 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.042 4.042 22 C 0.213 3.787 23 N -0.563 5.563 24 C 0.283 3.717 25 N -0.471 5.471 26 H 0.460 0.540 27 N -0.338 5.338 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.418 0.582 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.274 0.726 36 H 0.105 0.895 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -15.403 26.986 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.131 3.869 3 H 0.107 0.893 4 N -0.353 5.353 5 C 0.357 3.643 6 O -0.454 6.454 7 C -0.161 4.161 8 C -0.081 4.081 9 C -0.139 4.139 10 C -0.082 4.082 11 C -0.240 4.240 12 S 0.142 5.858 13 C -0.683 4.683 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.064 4.064 22 C -0.071 4.071 23 N -0.292 5.292 24 C -0.014 4.014 25 N -0.191 5.191 26 H 0.309 0.691 27 N -0.169 5.169 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.257 0.743 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -4.949 -13.807 25.685 29.578 hybrid contribution 1.960 0.461 1.358 2.429 sum -2.989 -13.346 27.043 30.305 Atomic orbital electron populations 1.22046 0.91813 1.03718 1.03033 1.18890 0.95372 0.94772 0.77872 0.89319 1.45620 1.67109 1.14800 1.07727 1.18360 0.76609 0.85842 0.83539 1.90762 1.51797 1.17373 1.85511 1.19877 1.07408 0.96071 0.92751 1.21689 0.94677 0.91524 1.00218 1.21541 0.99513 1.01886 0.90943 1.22086 0.94158 0.92334 0.99577 1.22493 1.04167 0.98202 0.99153 1.83471 1.24312 1.62316 1.15733 1.23063 1.00775 1.32978 1.11490 0.91524 1.25998 1.03058 0.95414 0.94075 1.70106 1.39095 1.34147 1.10889 0.85054 0.77071 0.77918 0.78621 1.18595 1.19705 1.19451 1.21628 0.94128 0.99143 0.91529 1.23910 0.97942 0.89738 0.95475 1.70309 1.25583 1.13796 1.19518 1.27170 0.90934 0.95079 0.88266 1.48099 1.48435 1.04138 1.18430 0.69087 1.77971 1.22316 1.13782 1.02788 0.90346 0.92111 0.90426 0.74281 0.81476 0.80628 0.84526 0.91691 0.87729 0.70583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.47 71.98 0.68 -2.34 16 2 C 0.24 5.63 3.12 44.25 0.14 5.77 16 3 H 0.09 2.50 7.58 -2.38 -0.02 2.49 16 4 N -0.70 -17.10 5.02 -448.96 -2.25 -19.35 16 5 C 0.57 18.96 7.74 86.79 0.67 19.63 16 6 O -0.57 -23.98 16.01 -3.87 -0.06 -24.04 16 7 C -0.16 -5.31 5.87 -20.11 -0.12 -5.43 16 8 C -0.06 -1.54 9.54 22.57 0.22 -1.33 16 9 C -0.12 -2.99 10.02 22.21 0.22 -2.77 16 10 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 11 C -0.13 -5.79 5.45 22.65 0.12 -5.66 16 12 S -0.09 -5.15 21.40 -56.49 -1.21 -6.36 16 13 C -0.54 -31.90 9.46 67.94 0.64 -31.26 16 14 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 15 C 0.02 1.15 5.49 84.84 0.47 1.62 16 16 N -0.91 -55.28 13.22 21.64 0.29 -54.99 16 17 Si 0.99 45.31 29.55 68.60 2.03 47.33 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.04 -1.84 9.34 22.70 0.21 -1.63 16 22 C 0.21 4.35 6.93 138.63 0.96 5.31 16 23 N -0.56 -8.70 10.87 -191.80 -2.09 -10.79 16 24 C 0.28 1.89 13.13 180.36 2.37 4.26 16 25 N -0.47 -4.25 7.45 -60.49 -0.45 -4.70 16 26 H 0.46 0.59 8.96 -213.10 -1.91 -1.32 16 27 N -0.34 -6.74 12.80 -51.33 -0.66 -7.39 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.42 8.05 6.37 -92.70 -0.59 7.46 16 32 H 0.17 2.54 6.40 -2.91 -0.02 2.52 16 33 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.10 5.16 7.65 -2.91 -0.02 5.14 16 37 H 0.28 -1.59 8.06 -2.91 -0.02 -1.62 16 Total: -1.00 -85.54 344.64 1.04 -84.50 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.36 Total: 11.54 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 6.80 Total: -15.75 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -5.16 Total: -97.22 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.21 Total: -6.36 kcal Total: -85.54 1.04 -84.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175261420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.633 kcal (2) G-P(sol) polarization free energy of solvation -85.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds