Wall clock time and date at job start Tue Mar 31 2020 12:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47565 * 2 1 4 4 N 1.46493 * 109.46994 * 120.00063 * 2 1 3 5 5 C 1.34783 * 120.00266 * 274.99662 * 4 2 1 6 6 O 1.21554 * 119.99505 * 0.02562 * 5 4 2 7 7 C 1.47857 * 120.00551 * 180.02562 * 5 4 2 8 8 C 1.39674 * 120.09834 * 0.02598 * 7 5 4 9 9 C 1.38046 * 120.04015 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.23908 * 359.76355 * 9 8 7 11 11 C 1.39179 * 120.20513 * 0.51284 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.73865 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47166 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46857 * 120.00071 * 17 15 13 20 20 H 1.48498 * 109.46876 * 239.99864 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.47003 * 11 10 9 22 22 C 1.50703 * 109.47203 * 240.00149 * 2 1 3 23 23 N 1.33239 * 125.52956 * 105.00145 * 22 2 1 24 24 C 1.30830 * 109.82808 * 180.02562 * 23 22 2 25 25 N 1.34431 * 108.07968 * 359.97438 * 24 23 22 26 26 H 0.97000 * 126.82011 * 180.02562 * 25 24 23 27 27 N 1.30713 * 125.52007 * 284.69629 * 22 2 1 28 28 H 1.09005 * 109.46945 * 60.00169 * 1 2 3 29 29 H 1.09003 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47204 * 300.00365 * 1 2 3 31 31 H 0.97000 * 120.00523 * 95.00365 * 4 2 1 32 32 H 1.08002 * 119.98410 * 359.97438 * 8 7 5 33 33 H 1.07996 * 119.87866 * 180.02562 * 9 8 7 34 34 H 1.08006 * 119.89861 * 180.27092 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 37 37 H 1.08002 * 125.96219 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8575 1.1610 2.4118 7 6 2.6404 -0.7151 3.5643 8 6 2.9741 -2.0700 3.5037 9 6 3.4351 -2.7193 4.6314 10 6 3.5732 -2.0324 5.8223 11 6 3.2381 -0.6835 5.8955 12 16 3.4096 0.1860 7.4184 13 6 1.7703 0.0311 8.0454 14 1 1.0443 -0.5688 7.5168 15 6 1.4120 0.6797 9.2183 16 7 2.2969 1.4103 9.8630 17 14 -0.3258 0.5148 9.8834 18 1 -1.1210 -0.3554 8.9804 19 1 -0.2815 -0.0877 11.2400 20 1 -0.9565 1.8572 9.9584 21 6 2.7739 -0.0219 4.7661 22 6 2.0323 -0.7104 -1.2305 23 7 2.5550 -0.1215 -2.3053 24 6 2.8880 -1.0266 -3.1894 25 7 2.5790 -2.2345 -2.6866 26 1 2.7118 -3.0942 -3.1158 27 7 2.0310 -2.0046 -1.4140 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2490 -1.6317 1.1526 32 1 2.8715 -2.6101 2.5741 33 1 3.6928 -3.7669 4.5815 34 1 3.9385 -2.5447 6.7001 35 1 2.0463 1.8641 10.6829 36 1 2.5171 1.0257 4.8189 37 1 3.3334 -0.8366 -4.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175261437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:20 Heat of formation + Delta-G solvation = 74.189184 kcal Electronic energy + Delta-G solvation = -22621.096843 eV Core-core repulsion = 19105.347730 eV Total energy + Delta-G solvation = -3515.749114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60207 -39.99542 -37.92938 -35.83554 -33.01129 -32.48512 -32.00339 -30.98259 -30.52601 -29.64065 -25.54837 -25.00893 -23.70934 -22.81475 -22.19137 -20.57023 -20.28219 -18.95780 -18.19015 -17.35153 -16.50696 -15.96127 -15.81502 -15.23966 -14.99206 -14.83425 -14.82567 -14.34183 -14.05818 -13.70918 -13.38013 -13.09493 -12.92648 -12.63616 -12.29386 -12.20226 -11.70467 -11.55271 -11.12993 -11.09812 -11.07760 -10.67938 -10.60596 -10.51210 -10.23413 -9.94390 -9.75565 -9.26874 -9.14691 -8.99423 -8.56980 -8.00061 -6.68860 -6.26463 -4.00134 1.11177 1.18440 1.69414 2.16958 2.34166 3.02692 3.05430 3.21513 3.24880 3.30957 3.49208 3.66377 4.10845 4.24226 4.28817 4.50787 4.82010 5.00991 5.09170 5.10163 5.14991 5.26612 5.43650 5.50041 5.66246 5.70289 5.77340 5.83796 5.89933 6.00996 6.05421 6.27253 6.30314 6.53657 6.61308 6.66387 6.95460 7.21401 7.46954 7.59366 7.60273 8.27127 8.35450 9.19587 10.80330 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002705 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.207614 B =10347.383805 C =10870.627307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.118 0.882 4 N -0.726 5.726 5 C 0.569 3.431 6 O -0.529 6.529 7 C -0.154 4.154 8 C -0.089 4.089 9 C -0.141 4.141 10 C -0.054 4.054 11 C -0.107 4.107 12 S -0.035 6.035 13 C -0.518 4.518 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.870 5.870 17 Si 0.921 3.079 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.017 4.017 22 C 0.226 3.774 23 N -0.533 5.533 24 C 0.264 3.736 25 N -0.483 5.483 26 H 0.443 0.557 27 N -0.306 5.306 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.269 0.731 36 H 0.140 0.860 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 -9.915 -25.444 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 H 0.136 0.864 4 N -0.380 5.380 5 C 0.358 3.642 6 O -0.406 6.406 7 C -0.158 4.158 8 C -0.108 4.108 9 C -0.161 4.161 10 C -0.076 4.076 11 C -0.218 4.218 12 S 0.199 5.801 13 C -0.666 4.666 14 H 0.095 0.905 15 C -0.136 4.136 16 N -0.506 5.506 17 Si 0.747 3.253 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.039 4.039 22 C -0.058 4.058 23 N -0.261 5.261 24 C -0.035 4.035 25 N -0.201 5.201 26 H 0.289 0.711 27 N -0.136 5.136 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.158 0.842 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.658 -8.485 -24.220 25.717 hybrid contribution -1.743 -1.849 -0.935 2.707 sum -0.085 -10.334 -25.155 27.195 Atomic orbital electron populations 1.22172 0.92943 1.02991 1.03596 1.19013 0.94425 0.96188 0.77163 0.86436 1.45910 1.68879 1.14344 1.08890 1.18390 0.76815 0.86368 0.82674 1.90783 1.49587 1.15452 1.84760 1.19802 1.07391 0.94646 0.94005 1.21153 0.98152 0.93250 0.98240 1.21049 1.02195 0.99815 0.93029 1.21961 0.94775 0.93454 0.97374 1.22844 1.00761 0.96943 1.01210 1.83609 1.17835 1.69114 1.09515 1.22880 0.96193 1.35858 1.11625 0.90550 1.25007 0.98556 0.94197 0.95859 1.69996 1.34048 1.29618 1.16903 0.86068 0.82347 0.78248 0.78652 1.19484 1.20514 1.20430 1.21954 0.91787 1.00389 0.89753 1.24290 0.97061 0.88228 0.96185 1.70424 1.19762 1.33763 1.02152 1.26183 0.96401 0.80930 0.99960 1.48145 1.48126 1.10283 1.13543 0.71102 1.77949 1.21113 1.17439 0.97107 0.91199 0.91886 0.90271 0.76043 0.86572 0.85887 0.85068 0.92123 0.84186 0.75802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.47 37.15 0.35 -1.36 16 2 C 0.24 2.89 3.12 -69.09 -0.22 2.68 16 3 H 0.12 1.58 7.58 -51.93 -0.39 1.18 16 4 N -0.73 -9.38 5.02 -55.88 -0.28 -9.66 16 5 C 0.57 9.43 7.74 -12.32 -0.10 9.34 16 6 O -0.53 -10.43 16.01 5.32 0.09 -10.34 16 7 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 8 C -0.09 -1.27 9.54 -39.12 -0.37 -1.65 16 9 C -0.14 -2.08 10.02 -39.67 -0.40 -2.47 16 10 C -0.05 -0.99 9.79 -39.25 -0.38 -1.37 16 11 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 12 S -0.04 -0.92 21.40 -107.50 -2.30 -3.22 16 13 C -0.52 -14.71 9.46 30.92 0.29 -14.42 16 14 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 15 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 16 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 17 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.02 -0.35 9.34 -38.92 -0.36 -0.72 16 22 C 0.23 2.50 6.95 -156.85 -1.09 1.41 16 23 N -0.53 -5.47 11.19 -11.97 -0.13 -5.60 16 24 C 0.26 1.51 13.13 -90.65 -1.19 0.32 16 25 N -0.48 -2.76 7.45 29.53 0.22 -2.54 16 26 H 0.44 0.81 8.96 -182.33 -1.63 -0.82 16 27 N -0.31 -3.01 12.45 32.42 0.40 -2.61 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 4.54 6.35 -40.82 -0.26 4.28 16 32 H 0.12 1.26 6.40 -52.49 -0.34 0.93 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 37 H 0.23 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -35.92 344.61 -10.60 -46.52 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.10 Total: 2.63 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.39 Total: -12.09 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.94 Total: -45.27 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.92 -10.60 -46.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175261437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.709 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds