Wall clock time and date at job start Tue Mar 31 2020 12:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47565 * 2 1 4 4 N 1.46493 * 109.46994 * 120.00063 * 2 1 3 5 5 C 1.34783 * 120.00266 * 274.99662 * 4 2 1 6 6 O 1.21554 * 119.99505 * 0.02562 * 5 4 2 7 7 C 1.47857 * 120.00551 * 180.02562 * 5 4 2 8 8 C 1.39674 * 120.09834 * 0.02598 * 7 5 4 9 9 C 1.38046 * 120.04015 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.23908 * 359.76355 * 9 8 7 11 11 C 1.39179 * 120.20513 * 0.51284 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.73865 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47166 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46857 * 120.00071 * 17 15 13 20 20 H 1.48498 * 109.46876 * 239.99864 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.47003 * 11 10 9 22 22 C 1.50703 * 109.47203 * 240.00149 * 2 1 3 23 23 N 1.33239 * 125.52956 * 105.00145 * 22 2 1 24 24 C 1.30830 * 109.82808 * 180.02562 * 23 22 2 25 25 N 1.34431 * 108.07968 * 359.97438 * 24 23 22 26 26 H 0.97000 * 126.82011 * 180.02562 * 25 24 23 27 27 N 1.30713 * 125.52007 * 284.69629 * 22 2 1 28 28 H 1.09005 * 109.46945 * 60.00169 * 1 2 3 29 29 H 1.09003 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47204 * 300.00365 * 1 2 3 31 31 H 0.97000 * 120.00523 * 95.00365 * 4 2 1 32 32 H 1.08002 * 119.98410 * 359.97438 * 8 7 5 33 33 H 1.07996 * 119.87866 * 180.02562 * 9 8 7 34 34 H 1.08006 * 119.89861 * 180.27092 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 37 37 H 1.08002 * 125.96219 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8575 1.1610 2.4118 7 6 2.6404 -0.7151 3.5643 8 6 2.9741 -2.0700 3.5037 9 6 3.4351 -2.7193 4.6314 10 6 3.5732 -2.0324 5.8223 11 6 3.2381 -0.6835 5.8955 12 16 3.4096 0.1860 7.4184 13 6 1.7703 0.0311 8.0454 14 1 1.0443 -0.5688 7.5168 15 6 1.4120 0.6797 9.2183 16 7 2.2969 1.4103 9.8630 17 14 -0.3258 0.5148 9.8834 18 1 -1.1210 -0.3554 8.9804 19 1 -0.2815 -0.0877 11.2400 20 1 -0.9565 1.8572 9.9584 21 6 2.7739 -0.0219 4.7661 22 6 2.0323 -0.7104 -1.2305 23 7 2.5550 -0.1215 -2.3053 24 6 2.8880 -1.0266 -3.1894 25 7 2.5790 -2.2345 -2.6866 26 1 2.7118 -3.0942 -3.1158 27 7 2.0310 -2.0046 -1.4140 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2490 -1.6317 1.1526 32 1 2.8715 -2.6101 2.5741 33 1 3.6928 -3.7669 4.5815 34 1 3.9385 -2.5447 6.7001 35 1 2.0463 1.8641 10.6829 36 1 2.5171 1.0257 4.8189 37 1 3.3334 -0.8366 -4.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175261437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:20 Heat of formation + Delta-G solvation = 49.510983 kcal Electronic energy + Delta-G solvation = -22622.166971 eV Core-core repulsion = 19105.347730 eV Total energy + Delta-G solvation = -3516.819241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.20746 -41.29899 -39.28544 -36.94098 -34.64774 -33.82835 -32.93558 -32.01980 -31.81449 -30.70186 -27.73941 -25.99792 -24.73979 -23.76330 -23.37623 -21.63506 -21.36288 -20.05948 -19.44465 -18.84022 -17.60068 -17.12041 -16.93018 -16.65993 -16.61671 -16.08338 -15.86173 -15.58284 -15.26096 -14.97674 -14.73957 -14.59786 -14.15506 -13.73698 -13.29945 -13.25595 -13.13737 -13.05510 -12.97652 -12.66997 -12.53509 -12.38459 -11.73416 -11.30511 -11.22659 -11.16858 -11.13690 -10.84397 -10.74024 -10.42625 -9.94520 -9.70945 -8.79974 -8.38810 -6.18637 -0.20973 0.24564 0.54283 1.30063 1.37060 1.46746 1.57933 1.68021 1.72068 1.77447 2.06737 2.24589 2.78152 2.94364 2.99056 3.42225 3.55408 3.69005 3.92647 3.99740 4.03471 4.09404 4.30888 4.35294 4.45719 4.58513 4.64097 4.79982 4.91285 5.04566 5.12140 5.19046 5.22614 5.24464 5.31085 5.39525 5.49325 5.84147 6.16834 6.22299 6.34128 6.98415 7.01808 7.05835 8.68567 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002705 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.207614 B =10347.383805 C =10870.627307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.238 3.762 3 H 0.097 0.903 4 N -0.704 5.704 5 C 0.569 3.431 6 O -0.571 6.571 7 C -0.156 4.156 8 C -0.064 4.064 9 C -0.120 4.120 10 C -0.060 4.060 11 C -0.128 4.128 12 S -0.094 6.094 13 C -0.534 4.534 14 H 0.067 0.933 15 C 0.019 3.981 16 N -0.906 5.906 17 Si 0.993 3.007 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.272 1.272 21 C -0.041 4.041 22 C 0.212 3.788 23 N -0.576 5.576 24 C 0.282 3.718 25 N -0.468 5.468 26 H 0.461 0.539 27 N -0.323 5.323 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.137 0.863 35 H 0.274 0.726 36 H 0.106 0.894 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -13.320 -28.490 31.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.131 3.869 3 H 0.115 0.885 4 N -0.358 5.358 5 C 0.358 3.642 6 O -0.450 6.450 7 C -0.161 4.161 8 C -0.083 4.083 9 C -0.139 4.139 10 C -0.081 4.081 11 C -0.239 4.239 12 S 0.141 5.859 13 C -0.681 4.681 14 H 0.086 0.914 15 C -0.186 4.186 16 N -0.543 5.543 17 Si 0.814 3.186 18 H -0.190 1.190 19 H -0.190 1.190 20 H -0.198 1.198 21 C -0.063 4.063 22 C -0.071 4.071 23 N -0.305 5.305 24 C -0.016 4.016 25 N -0.188 5.188 26 H 0.311 0.689 27 N -0.154 5.154 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 1.256 -11.955 -27.317 29.845 hybrid contribution -1.523 -0.907 -0.256 1.791 sum -0.267 -12.862 -27.574 30.427 Atomic orbital electron populations 1.22083 0.92144 1.03391 1.03255 1.18942 0.95051 0.95379 0.77496 0.88544 1.45704 1.67387 1.14599 1.08063 1.18336 0.76597 0.85869 0.83432 1.90768 1.51559 1.17299 1.85415 1.19877 1.07310 0.96036 0.92876 1.21660 0.94911 0.91599 1.00130 1.21528 0.99617 1.01770 0.91016 1.22086 0.94635 0.91936 0.99477 1.22501 1.04397 0.98385 0.98641 1.83491 1.17759 1.71225 1.13410 1.23092 0.96869 1.36031 1.12149 0.91446 1.26011 1.03038 0.93605 0.95957 1.70113 1.36232 1.30456 1.17470 0.84993 0.76764 0.78486 0.78312 1.19009 1.19026 1.19766 1.21638 0.93914 0.99361 0.91411 1.23877 0.98413 0.88706 0.96129 1.70377 1.21388 1.35789 1.02989 1.27098 0.94197 0.79835 1.00462 1.48084 1.46973 1.11472 1.12242 0.68891 1.77826 1.21740 1.16634 0.99216 0.89949 0.90983 0.92199 0.74697 0.81750 0.80735 0.84494 0.91699 0.87573 0.70844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.47 71.98 0.68 -2.50 16 2 C 0.24 5.65 3.12 44.25 0.14 5.78 16 3 H 0.10 2.70 7.58 -2.39 -0.02 2.68 16 4 N -0.70 -17.28 5.02 -448.97 -2.25 -19.54 16 5 C 0.57 18.99 7.74 86.79 0.67 19.66 16 6 O -0.57 -23.72 16.01 -3.89 -0.06 -23.78 16 7 C -0.16 -5.32 5.87 -20.11 -0.12 -5.44 16 8 C -0.06 -1.61 9.54 22.57 0.22 -1.39 16 9 C -0.12 -3.04 10.02 22.21 0.22 -2.81 16 10 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 11 C -0.13 -5.74 5.45 22.65 0.12 -5.62 16 12 S -0.09 -5.18 21.40 -56.49 -1.21 -6.38 16 13 C -0.53 -31.68 9.46 67.94 0.64 -31.04 16 14 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 15 C 0.02 1.10 5.49 84.84 0.47 1.57 16 16 N -0.91 -55.17 13.22 21.64 0.29 -54.89 16 17 Si 0.99 45.17 29.55 68.60 2.03 47.20 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C -0.04 -1.79 9.34 22.70 0.21 -1.58 16 22 C 0.21 4.32 6.95 138.63 0.96 5.28 16 23 N -0.58 -10.64 11.19 -191.80 -2.15 -12.78 16 24 C 0.28 2.18 13.13 180.36 2.37 4.54 16 25 N -0.47 -3.60 7.45 -60.49 -0.45 -4.05 16 26 H 0.46 -0.21 8.96 -213.09 -1.91 -2.12 16 27 N -0.32 -5.41 12.45 -51.33 -0.64 -6.05 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.41 8.06 6.35 -92.71 -0.59 7.47 16 32 H 0.17 2.57 6.40 -2.91 -0.02 2.55 16 33 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.11 5.21 7.65 -2.91 -0.02 5.19 16 37 H 0.28 -1.19 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -85.02 344.61 1.00 -84.02 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -1.36 Total: 11.72 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 6.81 Total: -15.47 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -5.20 Total: -97.31 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.21 Total: -6.38 kcal Total: -85.02 1.00 -84.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175261437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.535 kcal (2) G-P(sol) polarization free energy of solvation -85.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds