Wall clock time and date at job start Tue Mar 31 2020 12:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 C 1.34239 * 126.50179 * 265.02526 * 15 14 12 17 17 N 1.36831 * 109.93177 * 180.02562 * 16 15 14 18 18 H 0.96999 * 125.05788 * 180.02562 * 17 16 15 19 19 C 1.37686 * 109.87261 * 359.97438 * 17 16 15 20 20 C 1.39126 * 133.50089 * 180.02562 * 19 17 16 21 21 C 1.37757 * 119.77033 * 179.25645 * 20 19 17 22 22 C 1.38830 * 120.66596 * 0.60716 * 21 20 19 23 23 N 1.48019 * 119.73625 * 179.60563 * 22 21 20 24 24 O 1.21805 * 120.00244 * 180.02562 * 23 22 21 25 25 O 1.21806 * 120.00161 * 0.02562 * 23 22 21 26 26 C 1.36626 * 120.52913 * 359.62207 * 22 21 20 27 27 C 1.39621 * 119.76414 * 359.97438 * 26 22 21 28 28 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 30 30 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 31 31 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 32 32 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 33 33 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 34 34 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 35 35 H 1.08005 * 125.03576 * 359.97438 * 16 15 14 36 36 H 1.07994 * 120.11888 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.66575 * 180.20537 * 21 20 19 38 38 H 1.08004 * 120.11807 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 6 8.0149 -5.3567 0.0138 16 6 8.3259 -6.0939 1.0917 17 7 8.6676 -7.3617 0.7069 18 1 8.9302 -8.0752 1.3094 19 6 8.5822 -7.4742 -0.6627 20 6 8.8131 -8.5170 -1.5543 21 6 8.6212 -8.3182 -2.9039 22 6 8.2113 -7.0827 -3.3863 23 7 8.0199 -6.8894 -4.8413 24 8 7.6608 -5.8073 -5.2700 25 8 8.2214 -7.8125 -5.6101 26 6 7.9834 -6.0436 -2.5290 27 6 8.1636 -6.2253 -1.1564 28 1 -0.4850 0.8401 0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6584 -3.1503 -0.8892 32 1 3.6577 -3.1506 0.8908 33 1 7.9817 -3.4192 -0.8800 34 1 7.9732 -3.4158 0.8999 35 1 8.3096 -5.7387 2.1115 36 1 9.1303 -9.4824 -1.1886 37 1 8.7977 -9.1298 -3.5941 38 1 7.6643 -5.0854 -2.9115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179138948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:53 Heat of formation + Delta-G solvation = -37.786714 kcal Electronic energy + Delta-G solvation = -25094.709498 eV Core-core repulsion = 21099.059123 eV Total energy + Delta-G solvation = -3995.650375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41362 -41.80790 -39.97278 -37.67797 -36.60485 -36.29792 -33.75497 -33.30857 -31.38730 -30.86412 -30.50483 -27.98513 -26.35063 -25.13567 -23.50150 -22.31846 -21.69145 -20.64417 -20.05603 -19.02524 -18.76884 -18.28625 -17.59922 -17.55115 -16.83713 -16.63579 -16.21570 -15.76856 -15.14007 -15.00549 -14.66946 -14.22851 -14.11515 -13.76548 -13.31867 -13.30807 -13.02493 -12.54395 -12.42138 -12.31150 -11.69208 -11.56792 -11.46263 -11.29920 -11.26715 -11.18671 -10.70986 -10.61166 -10.44148 -9.99363 -9.92369 -9.72431 -9.36199 -9.14712 -8.63270 -8.41485 -6.13774 -4.15242 -0.23210 0.42041 1.26664 1.32503 1.92617 2.40525 2.46170 2.98302 3.27556 3.28647 3.35078 3.38538 3.87539 4.05557 4.27908 4.34615 4.37799 4.57302 4.72328 4.78665 4.89483 5.06385 5.19588 5.19810 5.27046 5.27991 5.45898 5.59555 5.74641 5.92696 5.94959 5.99335 6.18786 6.37806 6.43241 6.76627 6.80986 7.17692 7.20113 7.58643 7.61299 8.09858 8.38585 8.87739 9.45641 10.98852 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002770 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.661815 B =10106.525690 C =11321.888160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.361 6.361 12 C 0.453 3.547 13 O -0.507 6.507 14 C -0.045 4.045 15 C -0.139 4.139 16 C 0.077 3.923 17 N -0.581 5.581 18 H 0.424 0.576 19 C 0.136 3.864 20 C -0.119 4.119 21 C -0.052 4.052 22 C -0.068 4.068 23 N 0.035 4.965 24 O -0.165 6.165 25 O -0.169 6.169 26 C 0.012 3.988 27 C -0.097 4.097 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.726 -16.440 2.348 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.278 6.278 12 C 0.295 3.705 13 O -0.396 6.396 14 C -0.083 4.083 15 C -0.145 4.145 16 C -0.049 4.049 17 N -0.183 5.183 18 H 0.263 0.737 19 C 0.026 3.974 20 C -0.140 4.140 21 C -0.072 4.072 22 C -0.153 4.153 23 N 0.553 4.447 24 O -0.379 6.379 25 O -0.383 6.383 26 C -0.008 4.008 27 C -0.103 4.103 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.200 0.800 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 24.431 -16.758 3.166 29.795 hybrid contribution 0.112 0.477 -0.060 0.493 sum 24.543 -16.281 3.106 29.616 Atomic orbital electron populations 1.69897 1.06312 1.27236 1.50062 1.24941 0.94771 0.99217 0.94097 0.86739 0.80364 0.83217 0.78808 1.19976 1.21202 1.18761 1.20842 0.88305 0.95033 1.52455 0.90709 1.19623 0.96996 0.90147 0.97894 1.23380 0.72212 1.01590 1.01738 1.86479 1.26358 1.32093 1.82877 1.23439 0.91507 0.82250 0.73327 1.90665 1.67242 1.36663 1.45009 1.19624 0.89303 0.92607 1.06783 1.19611 1.09012 0.95216 0.90667 1.21781 1.00527 0.83042 0.99557 1.41806 1.58848 1.12493 1.05139 0.73745 1.18439 0.99357 0.95552 0.84078 1.19922 1.05518 0.98037 0.90563 1.20526 0.95960 0.95244 0.95488 1.20407 1.16806 0.98106 0.79940 1.43545 0.97555 1.00226 1.03423 1.94571 1.48606 1.13420 1.81353 1.94508 1.54773 1.34875 1.54152 1.20116 0.91099 0.98737 0.90856 1.18719 1.05701 0.93850 0.92005 0.92412 0.95402 0.95738 0.91720 0.91784 0.86729 0.86476 0.79993 0.83827 0.82769 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 16 10 C 0.08 1.75 5.40 37.15 0.20 1.95 16 11 O -0.36 -6.45 10.22 -39.26 -0.40 -6.85 16 12 C 0.45 6.89 7.95 36.00 0.29 7.17 16 13 O -0.51 -9.31 15.78 -18.76 -0.30 -9.61 16 14 C -0.05 -0.43 6.34 -29.04 -0.18 -0.61 16 15 C -0.14 -1.31 4.81 -102.71 -0.49 -1.80 16 16 C 0.08 0.51 11.73 -16.73 -0.20 0.31 16 17 N -0.58 -3.26 6.07 -10.65 -0.06 -3.33 16 18 H 0.42 0.87 8.96 -40.82 -0.37 0.50 16 19 C 0.14 1.11 7.28 -83.99 -0.61 0.50 16 20 C -0.12 -0.81 10.08 -39.43 -0.40 -1.21 16 21 C -0.05 -0.45 9.52 -39.54 -0.38 -0.82 16 22 C -0.07 -0.78 6.81 -80.31 -0.55 -1.33 16 23 N 0.03 0.48 4.45 33.79 0.15 0.63 16 24 O -0.16 -2.50 18.40 -29.46 -0.54 -3.04 16 25 O -0.17 -2.35 18.42 -29.46 -0.54 -2.89 16 26 C 0.01 0.13 9.55 -39.65 -0.38 -0.25 16 27 C -0.10 -1.01 6.35 -105.14 -0.67 -1.68 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 30 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 31 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.15 1.07 7.58 -52.49 -0.40 0.67 16 38 H 0.15 1.72 7.57 -52.48 -0.40 1.33 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -36.14 344.76 -8.37 -44.51 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.05 Total: -3.19 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.92 Total: -11.45 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.86 Total: -29.30 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.78 Total: -22.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.14 -8.37 -44.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179138948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.724 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds