Wall clock time and date at job start Tue Mar 31 2020 12:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 C 1.34239 * 126.50179 * 265.02526 * 15 14 12 17 17 N 1.36831 * 109.93177 * 180.02562 * 16 15 14 18 18 H 0.96999 * 125.05788 * 180.02562 * 17 16 15 19 19 C 1.37686 * 109.87261 * 359.97438 * 17 16 15 20 20 C 1.39126 * 133.50089 * 180.02562 * 19 17 16 21 21 C 1.37757 * 119.77033 * 179.25645 * 20 19 17 22 22 C 1.38830 * 120.66596 * 0.60716 * 21 20 19 23 23 N 1.48019 * 119.73625 * 179.60563 * 22 21 20 24 24 O 1.21805 * 120.00244 * 180.02562 * 23 22 21 25 25 O 1.21806 * 120.00161 * 0.02562 * 23 22 21 26 26 C 1.36626 * 120.52913 * 359.62207 * 22 21 20 27 27 C 1.39621 * 119.76414 * 359.97438 * 26 22 21 28 28 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 30 30 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 31 31 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 32 32 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 33 33 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 34 34 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 35 35 H 1.08005 * 125.03576 * 359.97438 * 16 15 14 36 36 H 1.07994 * 120.11888 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.66575 * 180.20537 * 21 20 19 38 38 H 1.08004 * 120.11807 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 6 8.0149 -5.3567 0.0138 16 6 8.3259 -6.0939 1.0917 17 7 8.6676 -7.3617 0.7069 18 1 8.9302 -8.0752 1.3094 19 6 8.5822 -7.4742 -0.6627 20 6 8.8131 -8.5170 -1.5543 21 6 8.6212 -8.3182 -2.9039 22 6 8.2113 -7.0827 -3.3863 23 7 8.0199 -6.8894 -4.8413 24 8 7.6608 -5.8073 -5.2700 25 8 8.2214 -7.8125 -5.6101 26 6 7.9834 -6.0436 -2.5290 27 6 8.1636 -6.2253 -1.1564 28 1 -0.4850 0.8401 0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6584 -3.1503 -0.8892 32 1 3.6577 -3.1506 0.8908 33 1 7.9817 -3.4192 -0.8800 34 1 7.9732 -3.4158 0.8999 35 1 8.3096 -5.7387 2.1115 36 1 9.1303 -9.4824 -1.1886 37 1 8.7977 -9.1298 -3.5941 38 1 7.6643 -5.0854 -2.9115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179138948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:52 Heat of formation + Delta-G solvation = -60.132588 kcal Electronic energy + Delta-G solvation = -25095.678488 eV Core-core repulsion = 21099.059123 eV Total energy + Delta-G solvation = -3996.619365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30521 -42.56076 -41.27785 -38.37200 -37.70635 -37.66207 -35.39375 -34.46473 -32.83331 -32.00225 -31.36245 -28.82273 -27.26824 -26.94783 -24.16055 -23.09950 -23.06654 -22.33598 -20.90739 -19.89477 -19.65611 -19.24280 -18.99776 -18.59533 -18.34419 -17.71314 -17.30431 -17.07582 -16.29942 -15.89589 -15.66497 -15.37139 -15.17560 -14.84614 -14.56790 -14.26014 -14.10945 -13.92640 -13.38444 -13.22614 -13.10529 -12.98268 -12.69775 -12.47590 -12.41798 -12.31133 -12.30701 -12.20781 -11.80326 -11.57004 -11.47961 -11.42566 -11.01893 -10.81766 -9.80509 -9.02559 -8.35047 -6.43627 -1.17647 -0.20688 0.38475 0.43044 1.23234 1.26330 1.39074 1.40400 1.53180 1.90291 2.02085 2.34558 2.38952 3.00093 3.23263 3.42817 3.60484 3.77007 3.87447 3.91735 4.14138 4.16341 4.19771 4.23651 4.40791 4.48761 4.60217 4.62926 4.63783 4.78629 4.96910 5.05811 5.07688 5.29096 5.29440 5.36461 5.50995 5.63675 5.69212 6.14700 6.43858 6.50113 6.62687 6.80142 7.21763 8.81285 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002770 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.661815 B =10106.525690 C =11321.888160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.239 1.239 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.003 4.003 10 C 0.095 3.905 11 O -0.362 6.362 12 C 0.449 3.551 13 O -0.543 6.543 14 C -0.032 4.032 15 C -0.180 4.180 16 C 0.105 3.895 17 N -0.562 5.562 18 H 0.445 0.555 19 C 0.133 3.867 20 C -0.097 4.097 21 C -0.062 4.062 22 C -0.083 4.083 23 N 0.037 4.963 24 O -0.220 6.220 25 O -0.163 6.163 26 C -0.011 4.011 27 C -0.119 4.119 28 H 0.271 0.729 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.223 0.777 36 H 0.188 0.812 37 H 0.171 0.829 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.104 -17.045 4.818 33.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.582 4.582 8 H 0.050 0.950 9 C -0.041 4.041 10 C 0.022 3.978 11 O -0.278 6.278 12 C 0.294 3.706 13 O -0.433 6.433 14 C -0.069 4.069 15 C -0.186 4.186 16 C -0.022 4.022 17 N -0.165 5.165 18 H 0.287 0.713 19 C 0.021 3.979 20 C -0.118 4.118 21 C -0.083 4.083 22 C -0.168 4.168 23 N 0.548 4.452 24 O -0.423 6.423 25 O -0.382 6.382 26 C -0.031 4.031 27 C -0.124 4.124 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.239 0.761 36 H 0.205 0.795 37 H 0.189 0.811 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 27.820 -17.320 5.635 33.252 hybrid contribution -0.916 0.427 -0.696 1.227 sum 26.905 -16.893 4.939 32.150 Atomic orbital electron populations 1.70050 1.08439 1.28669 1.51415 1.25994 0.95687 1.03736 0.93353 0.85572 0.79663 0.77434 0.79507 1.19017 1.20586 1.16249 1.21143 0.90938 0.93690 1.52467 0.94976 1.19457 0.93970 0.92075 0.98560 1.22857 0.74686 0.99610 1.00682 1.86472 1.23958 1.33982 1.83425 1.24740 0.93691 0.80702 0.71490 1.90648 1.68475 1.37514 1.46633 1.19762 0.84209 0.93804 1.09173 1.19744 1.12025 0.95604 0.91255 1.22409 0.96855 0.82537 1.00440 1.41866 1.57324 1.12915 1.04404 0.71263 1.18647 0.98883 0.94987 0.85362 1.20355 1.02885 0.99237 0.89290 1.20830 0.96218 0.94385 0.96837 1.20658 1.18539 0.99657 0.77976 1.43934 0.96906 0.99729 1.04632 1.94561 1.51261 1.14197 1.82243 1.94453 1.53915 1.34595 1.55218 1.20119 0.92684 0.98417 0.91897 1.19011 1.06085 0.95626 0.91716 0.92047 0.94198 0.94917 0.93375 0.92435 0.85565 0.82510 0.76099 0.79501 0.81118 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.96 43.37 27.47 68.60 1.88 45.25 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 7 C -0.54 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C 0.00 -0.15 4.42 29.85 0.13 -0.02 16 10 C 0.10 4.06 5.40 71.98 0.39 4.45 16 11 O -0.36 -12.60 10.22 -51.41 -0.53 -13.12 16 12 C 0.45 13.26 7.95 71.23 0.57 13.82 16 13 O -0.54 -19.95 15.78 21.94 0.35 -19.60 16 14 C -0.03 -0.53 6.34 29.10 0.18 -0.35 16 15 C -0.18 -2.93 4.81 -18.63 -0.09 -3.02 16 16 C 0.10 0.92 11.73 83.00 0.97 1.89 16 17 N -0.56 -3.76 6.07 -187.61 -1.14 -4.89 16 18 H 0.44 -0.57 8.96 -92.71 -0.83 -1.40 16 19 C 0.13 1.75 7.28 39.03 0.28 2.04 16 20 C -0.10 -0.99 10.08 22.37 0.23 -0.77 16 21 C -0.06 -0.98 9.52 22.30 0.21 -0.77 16 22 C -0.08 -1.97 6.81 36.14 0.25 -1.72 16 23 N 0.04 1.07 4.45 -47.02 -0.21 0.86 16 24 O -0.22 -7.34 18.40 18.88 0.35 -6.99 16 25 O -0.16 -4.66 18.42 18.88 0.35 -4.31 16 26 C -0.01 -0.27 9.55 22.23 0.21 -0.06 16 27 C -0.12 -2.33 6.35 -20.20 -0.13 -2.46 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 30 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 31 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.06 2.49 8.13 -2.38 -0.02 2.47 16 33 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.22 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.17 2.03 7.58 -2.91 -0.02 2.01 16 38 H 0.14 3.49 7.57 -2.91 -0.02 3.47 16 Total: -1.00 -84.16 344.76 5.51 -78.66 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 0.24 Total: 0.60 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.92 Total: -17.43 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -1.05 Total: -63.04 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: 0.52 Total: -44.03 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -84.16 5.51 -78.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179138948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.524 kcal (2) G-P(sol) polarization free energy of solvation -84.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds