Wall clock time and date at job start Tue Mar 31 2020 11:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21673 * 120.00212 * 359.72109 * 14 13 3 16 16 C 1.46797 * 119.99689 * 179.72435 * 14 13 3 17 17 C 1.36960 * 126.13857 * 179.71209 * 16 14 13 18 18 N 1.30544 * 114.02811 * 179.78156 * 17 16 14 19 19 C 1.30255 * 117.34523 * 0.53041 * 18 17 16 20 20 C 1.47956 * 124.74773 * 179.74070 * 19 18 17 21 21 N 1.32685 * 119.22273 * 179.68855 * 20 19 18 22 22 C 1.32142 * 120.73463 * 179.75973 * 21 20 19 23 23 C 1.38759 * 119.19874 * 0.50322 * 22 21 20 24 24 C 1.38751 * 118.57098 * 359.74815 * 23 22 21 25 25 N 1.32134 * 119.20158 * 0.02562 * 24 23 22 26 26 S 1.70923 * 110.50702 * 359.70269 * 19 18 17 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08004 * 122.98047 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.39997 * 180.27297 * 22 21 20 36 36 H 1.07997 * 120.71213 * 179.77641 * 23 22 21 37 37 H 1.08003 * 120.39657 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3399 2.6371 -0.4292 16 6 0.0511 3.3309 -2.6172 17 6 -1.1470 3.9442 -2.8706 18 7 -1.2370 4.4617 -4.0657 19 6 -0.2096 4.3269 -4.8550 20 6 -0.1367 4.8425 -6.2399 21 7 0.9696 4.6479 -6.9461 22 6 1.0653 5.0915 -8.1872 23 6 -0.0045 5.7763 -8.7457 24 6 -1.1443 5.9667 -7.9776 25 7 -1.1770 5.4937 -6.7443 26 16 1.0430 3.4720 -4.0666 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -1.9452 3.9978 -2.1450 35 1 1.9667 4.9262 -8.7587 36 1 0.0486 6.1526 -9.7566 37 1 -1.9941 6.4960 -8.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183816924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:41 Heat of formation + Delta-G solvation = 61.269552 kcal Electronic energy + Delta-G solvation = -22877.226023 eV Core-core repulsion = 19360.916672 eV Total energy + Delta-G solvation = -3516.309351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37102 -39.82798 -38.68310 -35.14534 -34.18532 -33.19658 -32.49064 -31.19658 -29.86041 -27.38010 -26.48847 -24.99725 -23.87537 -23.14376 -21.64113 -19.91741 -19.60438 -18.95061 -17.77837 -17.09485 -16.73763 -15.98997 -15.66912 -15.59829 -15.33986 -14.82531 -14.71360 -14.09782 -14.02903 -13.92321 -13.84598 -13.23773 -12.72323 -12.15100 -11.60642 -11.57302 -11.37220 -11.30427 -11.28085 -11.02639 -10.85713 -10.44408 -10.38300 -10.24891 -9.95905 -9.69147 -9.65375 -9.44529 -9.31491 -9.11057 -8.79302 -8.54571 -7.96169 -6.15906 -4.25929 -0.34235 0.68040 0.81896 1.03217 1.58259 2.55097 3.01864 3.24321 3.29772 3.30716 3.45581 3.67540 3.78058 3.88611 4.14674 4.33414 4.42439 4.61546 4.63443 4.91249 5.15591 5.23048 5.31301 5.43945 5.82660 6.06970 6.36301 6.42454 6.52933 6.61565 6.99938 7.13492 7.25029 7.33645 7.44528 7.55690 7.64254 7.68069 7.83435 8.11952 8.49272 8.68150 8.92556 9.40921 10.89420 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003033 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.074441 B = 9228.967539 C =10246.053928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.697 5.697 14 C 0.578 3.422 15 O -0.526 6.526 16 C -0.268 4.268 17 C 0.100 3.900 18 N -0.429 5.429 19 C 0.052 3.948 20 C 0.391 3.609 21 N -0.508 5.508 22 C 0.156 3.844 23 C -0.225 4.225 24 C 0.151 3.849 25 N -0.477 5.477 26 S 0.271 5.729 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.266 0.734 33 H 0.386 0.614 34 H 0.195 0.805 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 8.616 -21.460 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.344 5.344 14 C 0.360 3.640 15 O -0.405 6.405 16 C -0.395 4.395 17 C -0.060 4.060 18 N -0.145 5.145 19 C -0.220 4.220 20 C 0.123 3.877 21 N -0.223 5.223 22 C -0.010 4.010 23 C -0.248 4.248 24 C -0.016 4.016 25 N -0.192 5.192 26 S 0.527 5.473 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.219 0.781 34 H 0.211 0.789 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.679 8.093 -20.179 22.239 hybrid contribution 0.560 0.455 -0.694 1.001 sum -4.119 8.548 -20.874 22.929 Atomic orbital electron populations 1.21855 0.98277 0.98289 1.01228 1.21951 0.92678 0.99535 1.02537 1.18906 0.94510 0.89317 0.80338 0.92827 1.21166 0.90455 1.39468 1.06508 0.92024 1.24871 0.98704 0.94665 0.95285 1.69877 1.35309 1.37300 1.09330 0.86497 0.84688 0.78377 0.77503 1.20124 1.21099 1.20088 1.46522 1.13833 1.55136 1.18956 1.16709 0.83417 0.79210 0.84665 1.90821 1.51355 1.60024 1.38315 1.27142 1.00278 1.11034 1.01001 1.22442 0.96782 0.94427 0.92389 1.66202 1.26428 1.18651 1.03212 1.23996 0.95675 1.06013 0.96308 1.19723 0.85633 0.91419 0.90940 1.68230 1.25072 1.20774 1.08221 1.23246 0.98406 0.89673 0.89706 1.23094 0.96093 1.02278 1.03354 1.23401 0.97341 0.92405 0.88459 1.68466 1.28423 1.08891 1.13394 1.83993 1.15551 1.45558 1.02189 0.92982 0.94405 0.95623 0.94861 0.88012 0.92402 0.78091 0.78864 0.80586 0.82911 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.52 7.57 -51.93 -0.39 1.13 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.21 11.29 55.43 0.63 -23.58 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -14.43 5.01 -56.21 -0.28 -14.71 16 14 C 0.58 11.59 6.37 -12.80 -0.08 11.51 16 15 O -0.53 -12.04 14.02 5.21 0.07 -11.96 16 16 C -0.27 -4.45 6.53 -36.59 -0.24 -4.68 16 17 C 0.10 1.57 11.16 -18.56 -0.21 1.37 16 18 N -0.43 -6.82 10.42 -11.98 -0.12 -6.94 16 19 C 0.05 0.76 7.23 -14.24 -0.10 0.66 16 20 C 0.39 5.18 7.59 -156.95 -1.19 3.99 16 21 N -0.51 -5.71 10.05 -11.20 -0.11 -5.82 16 22 C 0.16 1.11 11.30 -17.23 -0.19 0.92 16 23 C -0.23 -1.23 10.17 -39.20 -0.40 -1.63 16 24 C 0.15 1.16 11.30 -17.23 -0.19 0.96 16 25 N -0.48 -5.90 10.28 -11.21 -0.12 -6.01 16 26 S 0.27 3.75 21.98 -107.50 -2.36 1.39 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.81 5.66 -51.93 -0.29 0.52 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 7.08 7.73 -40.82 -0.32 6.77 16 34 H 0.19 2.79 8.06 -52.48 -0.42 2.37 16 35 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 37 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -32.18 335.10 -9.05 -41.24 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.80 Total: 4.97 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.99 Total: 1.14 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.01 Total: -57.07 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.36 Total: 1.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.18 -9.05 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.506 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds