Wall clock time and date at job start Tue Mar 31 2020 11:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21673 * 120.00212 * 359.72109 * 14 13 3 16 16 C 1.46797 * 119.99689 * 179.72435 * 14 13 3 17 17 C 1.36960 * 126.13857 * 179.71209 * 16 14 13 18 18 N 1.30544 * 114.02811 * 179.78156 * 17 16 14 19 19 C 1.30255 * 117.34523 * 0.53041 * 18 17 16 20 20 C 1.47956 * 124.74773 * 179.74070 * 19 18 17 21 21 N 1.32685 * 119.22273 * 179.68855 * 20 19 18 22 22 C 1.32142 * 120.73463 * 179.75973 * 21 20 19 23 23 C 1.38759 * 119.19874 * 0.50322 * 22 21 20 24 24 C 1.38751 * 118.57098 * 359.74815 * 23 22 21 25 25 N 1.32134 * 119.20158 * 0.02562 * 24 23 22 26 26 S 1.70923 * 110.50702 * 359.70269 * 19 18 17 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08004 * 122.98047 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.39997 * 180.27297 * 22 21 20 36 36 H 1.07997 * 120.71213 * 179.77641 * 23 22 21 37 37 H 1.08003 * 120.39657 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3399 2.6371 -0.4292 16 6 0.0511 3.3309 -2.6172 17 6 -1.1470 3.9442 -2.8706 18 7 -1.2370 4.4617 -4.0657 19 6 -0.2096 4.3269 -4.8550 20 6 -0.1367 4.8425 -6.2399 21 7 0.9696 4.6479 -6.9461 22 6 1.0653 5.0915 -8.1872 23 6 -0.0045 5.7763 -8.7457 24 6 -1.1443 5.9667 -7.9776 25 7 -1.1770 5.4937 -6.7443 26 16 1.0430 3.4720 -4.0666 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -1.9452 3.9978 -2.1450 35 1 1.9667 4.9262 -8.7587 36 1 0.0486 6.1526 -9.7566 37 1 -1.9941 6.4960 -8.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183816924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:41 Heat of formation + Delta-G solvation = 38.531487 kcal Electronic energy + Delta-G solvation = -22878.212019 eV Core-core repulsion = 19360.916672 eV Total energy + Delta-G solvation = -3517.295347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08180 -41.17358 -40.16050 -36.98926 -34.87773 -34.41510 -33.94635 -32.95835 -31.09674 -29.07368 -27.76826 -25.67271 -25.16581 -24.60249 -23.15301 -21.44933 -21.09202 -20.23194 -18.88463 -18.11584 -18.01885 -17.25498 -17.11032 -16.70223 -16.54963 -16.22464 -16.11240 -15.51620 -15.09418 -14.94369 -14.80665 -14.59838 -14.43389 -13.92094 -13.51360 -13.17572 -12.95523 -12.68216 -12.65068 -12.20627 -12.09780 -12.05216 -12.03504 -11.60671 -11.27025 -11.21415 -11.08894 -10.85654 -10.60632 -10.53157 -10.35307 -9.89608 -9.70516 -8.16061 -6.33730 -1.37160 -0.10810 -0.04637 0.10810 0.40846 1.37073 1.46729 1.48316 1.55999 2.11204 2.14479 2.29567 2.50774 2.75302 3.12105 3.13643 3.54750 3.69855 3.82240 3.91044 4.09645 4.14314 4.41954 4.49391 4.56599 4.74550 4.79340 4.90085 5.05528 5.25064 5.31241 5.41361 5.45845 5.58002 5.75600 5.85781 5.92888 6.14173 6.35675 6.70157 6.78426 6.90389 7.23143 7.40759 8.89200 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003033 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.074441 B = 9228.967539 C =10246.053928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.696 5.696 14 C 0.583 3.417 15 O -0.562 6.562 16 C -0.305 4.305 17 C 0.113 3.887 18 N -0.454 5.454 19 C 0.061 3.939 20 C 0.352 3.648 21 N -0.525 5.525 22 C 0.144 3.856 23 C -0.189 4.189 24 C 0.135 3.865 25 N -0.510 5.510 26 S 0.320 5.680 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.199 0.801 35 H 0.215 0.785 36 H 0.202 0.798 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 9.567 -25.433 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.345 5.345 14 C 0.367 3.633 15 O -0.444 6.444 16 C -0.432 4.432 17 C -0.048 4.048 18 N -0.170 5.170 19 C -0.211 4.211 20 C 0.084 3.916 21 N -0.241 5.241 22 C -0.021 4.021 23 C -0.211 4.211 24 C -0.030 4.030 25 N -0.226 5.226 26 S 0.577 5.423 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.215 0.785 35 H 0.232 0.768 36 H 0.219 0.781 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.474 9.056 -24.207 26.078 hybrid contribution 0.147 0.306 0.238 0.415 sum -3.326 9.362 -23.969 25.946 Atomic orbital electron populations 1.21702 0.96964 0.99399 1.00290 1.21804 0.93779 0.98845 1.01635 1.18515 0.94017 0.89366 0.80553 0.97504 1.21513 0.91137 1.39425 1.06960 0.91004 1.25734 1.03302 0.94224 0.94902 1.70028 1.37166 1.38029 1.09821 0.85436 0.79070 0.78473 0.77620 1.19686 1.21165 1.18823 1.46248 1.14614 1.55444 1.18159 1.16984 0.82518 0.78360 0.85395 1.90790 1.52208 1.61281 1.40106 1.26612 1.01874 1.13546 1.01119 1.22564 0.96543 0.93190 0.92547 1.66292 1.27340 1.20038 1.03342 1.24568 0.95225 1.04119 0.97159 1.19524 0.87194 0.94134 0.90746 1.68195 1.24401 1.21472 1.10037 1.24051 1.00390 0.89118 0.88567 1.23623 0.93953 0.98879 1.04655 1.24098 0.99440 0.92218 0.87278 1.68375 1.28740 1.09614 1.15838 1.83686 1.14074 1.44633 0.99915 0.95109 0.94121 0.93342 0.93916 0.90500 0.92472 0.76650 0.78462 0.76807 0.78096 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.52 71.98 0.61 -5.09 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 5 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.70 -29.59 5.01 -449.97 -2.26 -31.85 16 14 C 0.58 24.24 6.37 86.48 0.55 24.79 16 15 O -0.56 -27.07 14.02 -4.26 -0.06 -27.13 16 16 C -0.31 -10.36 6.53 24.21 0.16 -10.20 16 17 C 0.11 3.65 11.16 84.58 0.94 4.60 16 18 N -0.45 -14.58 10.42 -191.80 -2.00 -16.58 16 19 C 0.06 1.78 7.23 87.50 0.63 2.41 16 20 C 0.35 8.96 7.59 137.37 1.04 10.00 16 21 N -0.52 -10.68 10.05 -189.36 -1.90 -12.59 16 22 C 0.14 1.48 11.30 84.77 0.96 2.44 16 23 C -0.19 -1.16 10.17 22.52 0.23 -0.93 16 24 C 0.13 1.63 11.30 84.77 0.96 2.59 16 25 N -0.51 -11.89 10.28 -189.37 -1.95 -13.84 16 26 S 0.32 8.72 21.98 -56.49 -1.24 7.48 16 27 H 0.03 1.48 7.85 -2.39 -0.02 1.46 16 28 H 0.04 1.78 5.66 -2.39 -0.01 1.77 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.40 14.71 7.73 -92.71 -0.72 13.99 16 34 H 0.20 5.98 8.06 -2.91 -0.02 5.95 16 35 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.20 -0.71 8.06 -2.91 -0.02 -0.73 16 37 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -73.76 335.10 0.30 -73.46 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.41 Total: 16.92 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.02 Total: 11.85 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -7.86 Total: -126.14 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 8.72 SS G_CDS: -1.24 Total: 7.48 kcal Total: -73.76 0.30 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.991 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds