Wall clock time and date at job start Tue Mar 31 2020 11:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21497 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.48281 * 119.99954 * 180.02562 * 14 13 3 17 17 C 1.40262 * 119.24094 * 179.97438 * 16 14 13 18 18 C 1.36508 * 119.81917 * 179.97438 * 17 16 14 19 19 C 1.40740 * 118.25311 * 0.02562 * 18 17 16 20 20 C 1.40432 * 121.25967 * 180.02562 * 19 18 17 21 21 C 1.36103 * 119.66610 * 179.97438 * 20 19 18 22 22 C 1.39564 * 120.89735 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 119.47185 * 179.97438 * 22 21 20 24 24 C 1.36117 * 121.05458 * 359.95665 * 22 21 20 25 25 C 1.40784 * 119.73200 * 0.03999 * 24 22 21 26 26 N 1.31890 * 119.23971 * 359.73043 * 16 14 13 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08005 * 120.08885 * 359.97438 * 17 16 14 35 35 H 1.07996 * 120.87747 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.17209 * 359.96311 * 20 19 18 37 37 H 1.08001 * 119.55093 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.13110 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0428 3.3269 -2.6340 17 6 -1.2282 3.9113 -2.7366 18 6 -1.6015 4.5248 -3.8975 19 6 -0.6835 4.5477 -4.9640 20 6 -1.0015 5.1621 -6.1862 21 6 -0.0888 5.1657 -7.1958 22 6 1.1610 4.5660 -7.0343 23 17 2.2968 4.5918 -8.3470 24 6 1.5039 3.9617 -5.8638 25 6 0.5868 3.9372 -4.7959 26 7 0.8986 3.3574 -3.6371 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 2.2720 2.1232 -1.9977 34 1 -1.9096 3.8760 -1.8994 35 1 -2.5760 4.9799 -3.9953 36 1 -1.9654 5.6291 -6.3243 37 1 -0.3355 5.6383 -8.1351 38 1 2.4754 3.5026 -5.7549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183859308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:54 Heat of formation + Delta-G solvation = 13.750097 kcal Electronic energy + Delta-G solvation = -23376.144700 eV Core-core repulsion = 19823.438293 eV Total energy + Delta-G solvation = -3552.706406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19688 -39.28110 -37.61911 -36.34388 -35.37391 -33.84896 -32.39683 -31.68454 -30.60497 -30.26412 -27.59535 -25.31557 -23.91880 -22.67985 -22.54888 -21.30763 -19.71570 -18.59938 -18.11784 -17.50299 -16.49241 -15.83181 -15.47701 -15.37325 -15.04466 -14.73762 -14.48536 -14.25576 -13.81615 -13.67626 -13.38837 -13.09009 -12.89507 -12.37807 -12.36743 -12.02433 -11.92903 -11.80110 -11.37809 -11.31015 -11.09421 -10.92362 -10.70159 -10.63997 -10.11003 -9.92284 -9.58939 -9.26338 -9.22814 -8.97174 -8.75104 -8.61289 -8.10409 -6.19728 -4.22497 -0.06584 0.32339 1.62994 1.73264 2.24989 3.23713 3.29812 3.35831 3.40020 3.57360 3.98920 4.02850 4.22517 4.31983 4.47677 4.51447 4.69781 4.79420 4.94265 5.13224 5.21035 5.39926 5.51899 5.56625 5.73617 5.78735 5.94852 5.97988 6.01484 6.08507 6.15741 6.38354 6.64207 6.67708 6.81015 6.92441 7.21114 7.26411 7.48314 7.53095 8.13952 8.50849 8.73354 8.85966 9.40107 10.92318 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003271 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.330979 B = 8558.069298 C = 9766.472696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.240 3.760 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.672 5.672 14 C 0.552 3.448 15 O -0.539 6.539 16 C 0.136 3.864 17 C -0.120 4.120 18 C -0.063 4.063 19 C -0.094 4.094 20 C -0.083 4.083 21 C -0.109 4.109 22 C -0.022 4.022 23 Cl -0.062 7.062 24 C -0.072 4.072 25 C 0.135 3.865 26 N -0.439 5.439 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.267 0.733 33 H 0.406 0.594 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 8.245 -17.494 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.319 5.319 14 C 0.334 3.666 15 O -0.417 6.417 16 C -0.018 4.018 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.096 4.096 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.051 4.051 23 Cl -0.034 7.034 24 C -0.092 4.092 25 C 0.011 3.989 26 N -0.151 5.151 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.242 0.758 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.165 7.776 -16.776 22.698 hybrid contribution -0.729 -0.104 0.112 0.745 sum -13.894 7.673 -16.664 23.013 Atomic orbital electron populations 1.21884 0.96946 0.99185 1.02172 1.22295 0.94362 0.99781 1.01340 1.19264 0.95943 0.88619 0.82488 0.93036 1.21040 0.88445 1.39898 1.07969 0.90010 1.24822 0.94867 0.95118 0.97622 1.69865 1.08680 1.44422 1.29783 0.86917 0.80988 0.79989 0.80932 1.20194 1.22141 1.18406 1.46121 1.14214 1.53269 1.18275 1.17841 0.83440 0.79750 0.85560 1.90757 1.51846 1.60421 1.38691 1.21830 0.90968 0.95470 0.93574 1.21862 0.96742 0.96316 0.99186 1.21443 0.99120 0.96740 0.91629 1.19019 0.95151 0.99712 0.95743 1.20933 0.99680 0.98186 0.91361 1.20813 0.91813 0.99735 1.00348 1.20548 0.92160 1.02074 0.90271 1.98393 1.60301 1.97329 1.47331 1.20775 1.00254 0.98281 0.89865 1.18602 0.91894 0.96271 0.92112 1.67911 1.33398 1.14722 0.99074 0.93097 0.92742 0.94819 0.92570 0.92112 0.92266 0.75823 0.82841 0.83529 0.84131 0.84406 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.56 16 2 C -0.14 -3.09 5.11 -26.74 -0.14 -3.23 16 3 C 0.24 5.71 1.83 -69.09 -0.13 5.58 16 4 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 5 C -0.54 -14.57 9.31 -34.44 -0.32 -14.89 16 6 H 0.08 2.36 7.98 -52.49 -0.42 1.95 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 9 Si 0.88 21.60 24.41 -169.99 -4.15 17.45 16 10 H -0.28 -6.53 6.83 56.52 0.39 -6.14 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 13 N -0.67 -13.88 5.01 -55.75 -0.28 -14.16 16 14 C 0.55 10.58 6.38 -12.13 -0.08 10.50 16 15 O -0.54 -11.31 13.42 5.37 0.07 -11.24 16 16 C 0.14 2.15 6.75 -82.95 -0.56 1.59 16 17 C -0.12 -1.51 9.54 -39.45 -0.38 -1.89 16 18 C -0.06 -0.62 9.88 -39.26 -0.39 -1.00 16 19 C -0.09 -1.00 5.75 -106.71 -0.61 -1.61 16 20 C -0.08 -0.64 9.77 -39.52 -0.39 -1.03 16 21 C -0.11 -0.86 9.73 -39.85 -0.39 -1.25 16 22 C -0.02 -0.21 6.27 -39.85 -0.25 -0.46 16 23 Cl -0.06 -0.57 28.91 -51.86 -1.50 -2.07 16 24 C -0.07 -0.84 9.73 -39.38 -0.38 -1.22 16 25 C 0.14 1.77 6.61 -84.86 -0.56 1.21 16 26 N -0.44 -6.77 9.47 -7.54 -0.07 -6.84 16 27 H 0.05 0.99 5.65 -51.93 -0.29 0.70 16 28 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.30 3.22 -51.93 -0.17 1.14 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.41 8.00 7.84 -40.82 -0.32 7.68 16 34 H 0.15 1.80 7.60 -52.48 -0.40 1.40 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -30.91 329.83 -8.60 -39.51 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.07 Total: 6.18 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.35 Total: -8.13 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.42 Total: -46.66 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.91 -8.60 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds