Wall clock time and date at job start Tue Mar 31 2020 11:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21497 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.48281 * 119.99954 * 180.02562 * 14 13 3 17 17 C 1.40262 * 119.24094 * 179.97438 * 16 14 13 18 18 C 1.36508 * 119.81917 * 179.97438 * 17 16 14 19 19 C 1.40740 * 118.25311 * 0.02562 * 18 17 16 20 20 C 1.40432 * 121.25967 * 180.02562 * 19 18 17 21 21 C 1.36103 * 119.66610 * 179.97438 * 20 19 18 22 22 C 1.39564 * 120.89735 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 119.47185 * 179.97438 * 22 21 20 24 24 C 1.36117 * 121.05458 * 359.95665 * 22 21 20 25 25 C 1.40784 * 119.73200 * 0.03999 * 24 22 21 26 26 N 1.31890 * 119.23971 * 359.73043 * 16 14 13 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08005 * 120.08885 * 359.97438 * 17 16 14 35 35 H 1.07996 * 120.87747 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.17209 * 359.96311 * 20 19 18 37 37 H 1.08001 * 119.55093 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.13110 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0428 3.3269 -2.6340 17 6 -1.2282 3.9113 -2.7366 18 6 -1.6015 4.5248 -3.8975 19 6 -0.6835 4.5477 -4.9640 20 6 -1.0015 5.1621 -6.1862 21 6 -0.0888 5.1657 -7.1958 22 6 1.1610 4.5660 -7.0343 23 17 2.2968 4.5918 -8.3470 24 6 1.5039 3.9617 -5.8638 25 6 0.5868 3.9372 -4.7959 26 7 0.8986 3.3574 -3.6371 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 2.2720 2.1232 -1.9977 34 1 -1.9096 3.8760 -1.8994 35 1 -2.5760 4.9799 -3.9953 36 1 -1.9654 5.6291 -6.3243 37 1 -0.3355 5.6383 -8.1351 38 1 2.4754 3.5026 -5.7549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183859308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:53 Heat of formation + Delta-G solvation = -6.526260 kcal Electronic energy + Delta-G solvation = -23377.023949 eV Core-core repulsion = 19823.438293 eV Total energy + Delta-G solvation = -3553.585655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14392 -40.70178 -38.52722 -37.31086 -36.97224 -34.79254 -34.34547 -33.30449 -31.61315 -31.09890 -29.46922 -26.44811 -24.88377 -24.45478 -23.33872 -22.77286 -21.39438 -19.90360 -19.23146 -18.38410 -18.20229 -17.50097 -16.69749 -16.61215 -16.28956 -15.87003 -15.56325 -15.49439 -15.10050 -14.97502 -14.48715 -14.35759 -14.17356 -13.88108 -13.70330 -13.59181 -13.18487 -12.98288 -12.79252 -12.73341 -12.42052 -12.20182 -12.04807 -11.86582 -11.54665 -11.49122 -11.28639 -11.21897 -10.87656 -10.58719 -9.93617 -9.74882 -9.39482 -8.38991 -6.45956 -0.94058 -0.53553 0.79982 0.96825 1.27248 1.29972 1.35088 1.45588 2.13393 2.21347 2.25825 2.94508 2.97547 2.98037 3.45409 3.65447 3.79343 3.85813 3.91480 4.08360 4.21135 4.29889 4.31836 4.43766 4.64443 4.73975 4.76390 4.78255 4.93718 4.98632 5.06941 5.09333 5.18537 5.20592 5.34801 5.36745 5.49100 5.56286 5.59876 6.08811 6.49664 6.55705 6.82268 7.13408 7.29591 8.76575 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003271 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.330979 B = 8558.069298 C = 9766.472696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.248 3.752 4 H 0.031 0.969 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.940 3.060 10 H -0.258 1.258 11 H -0.291 1.291 12 H -0.255 1.255 13 N -0.681 5.681 14 C 0.553 3.447 15 O -0.560 6.560 16 C 0.110 3.890 17 C -0.136 4.136 18 C -0.035 4.035 19 C -0.100 4.100 20 C -0.064 4.064 21 C -0.106 4.106 22 C -0.013 4.013 23 Cl -0.059 7.059 24 C -0.101 4.101 25 C 0.112 3.888 26 N -0.468 5.468 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.271 0.729 33 H 0.408 0.592 34 H 0.159 0.841 35 H 0.198 0.802 36 H 0.188 0.812 37 H 0.171 0.829 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 9.242 -19.487 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.049 0.951 5 C -0.577 4.577 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.766 3.234 10 H -0.183 1.183 11 H -0.219 1.219 12 H -0.179 1.179 13 N -0.329 5.329 14 C 0.338 3.662 15 O -0.440 6.440 16 C -0.042 4.042 17 C -0.157 4.157 18 C -0.060 4.060 19 C -0.102 4.102 20 C -0.083 4.083 21 C -0.124 4.124 22 C -0.042 4.042 23 Cl -0.030 7.030 24 C -0.120 4.120 25 C -0.012 4.012 26 N -0.181 5.181 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.243 0.757 34 H 0.176 0.824 35 H 0.215 0.785 36 H 0.205 0.795 37 H 0.188 0.812 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.732 8.777 -18.791 26.648 hybrid contribution 0.419 -0.266 0.472 0.685 sum -16.313 8.511 -18.319 25.964 Atomic orbital electron populations 1.21769 0.94845 1.00857 1.01674 1.22209 0.96191 0.98111 1.01108 1.18916 0.93394 0.89936 0.83370 0.95115 1.21262 0.90339 1.39020 1.07083 0.93274 1.25600 0.95868 0.95687 0.99904 1.69986 1.10439 1.45968 1.30884 0.85977 0.79407 0.79991 0.77985 1.18332 1.21856 1.17892 1.45991 1.15338 1.54255 1.17270 1.18333 0.82272 0.78793 0.86807 1.90717 1.52174 1.61093 1.39984 1.21362 0.92818 0.97716 0.92347 1.21919 0.95449 0.97413 1.00884 1.21949 1.00413 0.94124 0.89517 1.19354 0.94113 0.99340 0.97430 1.21416 1.01227 0.96285 0.89340 1.21232 0.90558 0.98780 1.01839 1.20763 0.92998 1.00948 0.89507 1.98400 1.60516 1.97217 1.46846 1.20742 1.00153 1.00286 0.90840 1.18887 0.93693 0.97134 0.91485 1.67729 1.34284 1.15980 1.00077 0.93158 0.93684 0.91969 0.93284 0.91757 0.91981 0.75688 0.82360 0.78497 0.79465 0.81165 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.51 71.98 0.61 -4.59 16 2 C -0.14 -6.11 5.11 30.59 0.16 -5.96 16 3 C 0.25 12.20 1.83 44.24 0.08 12.28 16 4 H 0.03 1.64 6.63 -2.39 -0.02 1.63 16 5 C -0.54 -30.73 9.31 25.60 0.24 -30.49 16 6 H 0.05 3.04 7.98 -2.91 -0.02 3.02 16 7 C 0.03 1.69 5.45 84.66 0.46 2.15 16 8 N -0.93 -57.38 13.96 21.45 0.30 -57.08 16 9 Si 0.94 45.13 24.41 68.60 1.67 46.81 16 10 H -0.26 -11.59 6.83 99.48 0.68 -10.92 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.25 -11.95 6.53 99.48 0.65 -11.30 16 13 N -0.68 -29.58 5.01 -448.58 -2.25 -31.83 16 14 C 0.55 21.95 6.38 86.92 0.55 22.51 16 15 O -0.56 -23.99 13.42 -3.71 -0.05 -24.04 16 16 C 0.11 3.55 6.75 42.30 0.29 3.84 16 17 C -0.14 -3.23 9.54 22.36 0.21 -3.01 16 18 C -0.03 -0.54 9.88 22.48 0.22 -0.32 16 19 C -0.10 -1.81 5.75 -21.22 -0.12 -1.93 16 20 C -0.06 -0.66 9.77 22.31 0.22 -0.45 16 21 C -0.11 -1.23 9.73 22.09 0.21 -1.01 16 22 C -0.01 -0.24 6.27 22.10 0.14 -0.10 16 23 Cl -0.06 -0.99 28.91 -2.72 -0.08 -1.07 16 24 C -0.10 -2.33 9.73 22.40 0.22 -2.12 16 25 C 0.11 2.89 6.61 40.46 0.27 3.16 16 26 N -0.47 -14.96 9.47 -177.78 -1.68 -16.65 16 27 H 0.05 1.94 5.65 -2.39 -0.01 1.93 16 28 H 0.04 1.82 7.85 -2.39 -0.02 1.80 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 2.24 3.22 -2.39 -0.01 2.23 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.41 17.29 7.84 -92.71 -0.73 16.56 16 34 H 0.16 3.50 7.60 -2.91 -0.02 3.48 16 35 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -71.49 329.83 1.98 -69.51 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.30 Total: 20.40 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 3.76 Total: -6.05 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.63 Total: -105.55 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.67 Total: 46.81 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -71.49 1.98 -69.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.985 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds