Wall clock time and date at job start Tue Mar 31 2020 11:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21621 * 120.00213 * 0.02562 * 14 13 3 16 16 C 1.47350 * 119.99756 * 180.02562 * 14 13 3 17 17 C 1.36315 * 122.54852 * 180.02562 * 16 14 13 18 18 S 1.71016 * 108.98708 * 179.97438 * 17 16 14 19 19 C 1.75973 * 90.62358 * 0.02562 * 18 17 16 20 20 C 1.47905 * 125.22847 * 179.97438 * 19 18 17 21 21 C 1.39638 * 120.11779 * 359.70295 * 20 19 18 22 22 N 1.31963 * 119.84849 * 179.75109 * 21 20 19 23 23 C 1.32234 * 120.10343 * 0.49896 * 22 21 20 24 24 C 1.38461 * 120.24897 * 359.75706 * 23 22 21 25 25 N 1.31986 * 120.14716 * 359.97438 * 24 23 22 26 26 N 1.29781 * 109.54501 * 359.75505 * 19 18 17 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.07998 * 125.50968 * 359.94692 * 17 16 14 35 35 H 1.07996 * 120.08425 * 359.97438 * 21 20 19 36 36 H 1.07994 * 119.87937 * 179.73159 * 23 22 21 37 37 H 1.07998 * 119.92953 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6325 -0.4314 16 6 0.0453 3.3228 -2.6261 17 6 -1.1714 3.9126 -2.7991 18 16 -1.2542 4.5645 -4.3780 19 6 0.3762 3.9968 -4.7187 20 6 1.0958 4.1859 -5.9969 21 6 0.4793 4.8562 -7.0555 22 7 1.1281 5.0263 -8.1920 23 6 2.3555 4.5546 -8.3321 24 6 2.9687 3.8846 -7.2870 25 7 2.3309 3.7136 -6.1442 26 7 0.8519 3.3906 -3.6744 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 -1.9565 3.9601 -2.0590 35 1 -0.5247 5.2378 -6.9433 36 1 2.8814 4.6920 -9.2652 37 1 3.9712 3.5011 -7.4071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183863279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:47 Heat of formation + Delta-G solvation = 57.485176 kcal Electronic energy + Delta-G solvation = -23175.803987 eV Core-core repulsion = 19659.330533 eV Total energy + Delta-G solvation = -3516.473454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39271 -40.11197 -38.21308 -35.08776 -34.69266 -32.88829 -32.32275 -30.90294 -29.90101 -27.28816 -26.38241 -25.04890 -24.44567 -22.87304 -21.55196 -19.78349 -19.38982 -18.80309 -17.51535 -17.37823 -16.87120 -16.71019 -15.63018 -15.56528 -15.23561 -14.83525 -14.74094 -14.19904 -13.85263 -13.68694 -13.22283 -13.11501 -12.66904 -12.17470 -11.95521 -11.94013 -11.67278 -11.47411 -11.21537 -10.96746 -10.79437 -10.34483 -10.31844 -10.15531 -10.06739 -9.70323 -9.61748 -9.51533 -9.25478 -9.02472 -8.68757 -8.46694 -7.80168 -6.08912 -4.17682 -0.27379 0.61626 0.87005 0.90110 1.35112 2.21226 3.29489 3.30724 3.33887 3.36217 3.37431 3.79479 3.90236 3.91467 4.06232 4.19625 4.41881 4.61200 4.80623 4.91709 5.01084 5.16911 5.22367 5.34475 5.82587 5.97372 6.40960 6.47738 6.67175 6.82039 7.07035 7.17849 7.26995 7.36869 7.42279 7.46001 7.66354 7.77941 7.92906 8.19771 8.68590 8.78981 9.09825 9.48940 10.96591 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003615 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.734006 B = 7743.923082 C = 9327.038284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.573 3.427 15 O -0.543 6.543 16 C 0.022 3.978 17 C -0.205 4.205 18 S 0.186 5.814 19 C 0.067 3.933 20 C 0.155 3.845 21 C 0.069 3.931 22 N -0.430 5.430 23 C 0.051 3.949 24 C 0.064 3.936 25 N -0.398 5.398 26 N -0.387 5.387 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.399 0.601 34 H 0.196 0.804 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 8.829 -20.068 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.329 5.329 14 C 0.355 3.645 15 O -0.422 6.422 16 C -0.115 4.115 17 C -0.348 4.348 18 S 0.442 5.558 19 C -0.210 4.210 20 C 0.013 3.987 21 C -0.094 4.094 22 N -0.144 5.144 23 C -0.109 4.109 24 C -0.098 4.098 25 N -0.114 5.114 26 N -0.102 5.102 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.213 0.787 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.352 8.998 -19.705 22.876 hybrid contribution 1.559 -0.488 0.596 1.738 sum -5.794 8.509 -19.110 21.706 Atomic orbital electron populations 1.21845 0.98397 0.98112 1.01140 1.21940 0.92589 0.99672 1.02449 1.18875 0.94431 0.89259 0.80654 0.93103 1.21207 0.90612 1.39011 1.06338 0.91978 1.24870 0.98636 0.94764 0.95322 1.69884 1.35212 1.37685 1.09335 0.86499 0.84842 0.78331 0.77399 1.20179 1.21150 1.20112 1.46422 1.13937 1.53681 1.18863 1.17042 0.83564 0.79435 0.84509 1.90786 1.51919 1.60917 1.38566 1.21093 0.90746 1.03991 0.95683 1.27018 1.02860 1.03009 1.01881 1.83494 1.14222 1.51704 1.06379 1.25150 0.95214 1.04774 0.95880 1.19527 0.91613 0.96479 0.91090 1.23605 1.00847 0.96201 0.88750 1.68479 1.08117 1.15477 1.22320 1.23966 0.91829 0.94489 1.00662 1.23977 1.01362 0.95834 0.88662 1.68566 1.06091 1.13656 1.23103 1.66859 1.32168 1.12968 0.98188 0.94448 0.93057 0.95755 0.88100 0.94903 0.92529 0.76665 0.78654 0.81290 0.80702 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.19 5.45 -26.74 -0.15 -3.34 16 3 C 0.27 7.00 2.24 -69.09 -0.15 6.84 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.54 8.73 -34.44 -0.30 -14.84 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.00 11.29 55.43 0.63 -24.37 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.68 -15.45 5.02 -56.04 -0.28 -15.73 16 14 C 0.57 12.20 6.36 -12.55 -0.08 12.12 16 15 O -0.54 -12.71 13.81 5.26 0.07 -12.63 16 16 C 0.02 0.39 6.68 -84.59 -0.56 -0.18 16 17 C -0.21 -2.76 10.63 30.04 0.32 -2.44 16 18 S 0.19 1.81 22.11 -107.50 -2.38 -0.57 16 19 C 0.07 0.88 7.39 -14.46 -0.11 0.77 16 20 C 0.15 1.84 6.75 -82.86 -0.56 1.28 16 21 C 0.07 0.63 10.78 -16.97 -0.18 0.45 16 22 N -0.43 -3.94 10.49 -12.73 -0.13 -4.07 16 23 C 0.05 0.37 11.22 -17.30 -0.19 0.17 16 24 C 0.06 0.54 11.22 -17.40 -0.20 0.35 16 25 N -0.40 -5.05 10.41 -9.66 -0.10 -5.15 16 26 N -0.39 -6.42 9.99 -7.88 -0.08 -6.50 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.40 8.62 8.02 -40.82 -0.33 8.29 16 34 H 0.20 2.36 8.02 -52.49 -0.42 1.94 16 35 H 0.17 1.10 7.28 -52.49 -0.38 0.72 16 36 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.05 334.02 -7.97 -41.01 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.77 Total: 6.85 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.94 Total: 0.12 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.03 Total: -55.83 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.38 Total: -0.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.05 -7.97 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183863279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.499 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds