Wall clock time and date at job start Tue Mar 31 2020 11:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21621 * 120.00213 * 0.02562 * 14 13 3 16 16 C 1.47350 * 119.99756 * 180.02562 * 14 13 3 17 17 C 1.36315 * 122.54852 * 180.02562 * 16 14 13 18 18 S 1.71016 * 108.98708 * 179.97438 * 17 16 14 19 19 C 1.75973 * 90.62358 * 0.02562 * 18 17 16 20 20 C 1.47905 * 125.22847 * 179.97438 * 19 18 17 21 21 C 1.39638 * 120.11779 * 359.70295 * 20 19 18 22 22 N 1.31963 * 119.84849 * 179.75109 * 21 20 19 23 23 C 1.32234 * 120.10343 * 0.49896 * 22 21 20 24 24 C 1.38461 * 120.24897 * 359.75706 * 23 22 21 25 25 N 1.31986 * 120.14716 * 359.97438 * 24 23 22 26 26 N 1.29781 * 109.54501 * 359.75505 * 19 18 17 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.07998 * 125.50968 * 359.94692 * 17 16 14 35 35 H 1.07996 * 120.08425 * 359.97438 * 21 20 19 36 36 H 1.07994 * 119.87937 * 179.73159 * 23 22 21 37 37 H 1.07998 * 119.92953 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6325 -0.4314 16 6 0.0453 3.3228 -2.6261 17 6 -1.1714 3.9126 -2.7991 18 16 -1.2542 4.5645 -4.3780 19 6 0.3762 3.9968 -4.7187 20 6 1.0958 4.1859 -5.9969 21 6 0.4793 4.8562 -7.0555 22 7 1.1281 5.0263 -8.1920 23 6 2.3555 4.5546 -8.3321 24 6 2.9687 3.8846 -7.2870 25 7 2.3309 3.7136 -6.1442 26 7 0.8519 3.3906 -3.6744 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 -1.9565 3.9601 -2.0590 35 1 -0.5247 5.2378 -6.9433 36 1 2.8814 4.6920 -9.2652 37 1 3.9712 3.5011 -7.4071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183863279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:47 Heat of formation + Delta-G solvation = 32.501139 kcal Electronic energy + Delta-G solvation = -23176.887376 eV Core-core repulsion = 19659.330533 eV Total energy + Delta-G solvation = -3517.556843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11087 -41.40980 -39.70887 -36.99184 -35.43144 -34.33166 -33.68358 -32.78471 -30.91767 -29.18163 -27.40774 -26.05810 -25.48693 -24.65930 -22.81520 -21.54776 -20.79121 -20.09151 -18.57207 -18.27228 -18.03185 -17.65961 -17.23503 -17.00489 -16.67819 -16.21056 -16.04182 -15.48282 -15.12714 -14.83717 -14.62258 -14.50215 -13.89911 -13.83044 -13.49661 -13.24274 -13.06989 -12.93606 -12.68202 -12.65477 -12.44023 -12.21193 -12.09505 -11.63835 -11.20192 -11.16861 -11.08408 -10.91777 -10.57704 -10.55540 -10.18625 -9.77666 -9.51588 -8.18509 -6.35913 -1.10813 -0.16381 -0.03535 0.07634 0.33908 1.05235 1.42542 1.44943 1.52936 2.31147 2.36418 2.43738 2.68421 2.72309 3.10322 3.19911 3.23914 3.42024 3.70873 4.05564 4.09425 4.13209 4.34804 4.45919 4.46489 4.53455 4.65559 4.74436 5.02874 5.21260 5.28505 5.39648 5.49854 5.56734 5.74587 5.85014 6.12154 6.14614 6.35632 6.69266 6.70273 6.91021 7.26838 7.43327 8.86894 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003615 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.734006 B = 7743.923082 C = 9327.038284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.266 1.266 13 N -0.688 5.688 14 C 0.572 3.428 15 O -0.574 6.574 16 C -0.011 4.011 17 C -0.214 4.214 18 S 0.320 5.680 19 C 0.049 3.951 20 C 0.124 3.876 21 C 0.078 3.922 22 N -0.445 5.445 23 C 0.071 3.929 24 C 0.058 3.942 25 N -0.444 5.444 26 N -0.428 5.428 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.267 0.733 33 H 0.403 0.597 34 H 0.206 0.794 35 H 0.195 0.805 36 H 0.218 0.782 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 10.030 -23.301 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.592 4.592 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.191 1.191 13 N -0.335 5.335 14 C 0.356 3.644 15 O -0.455 6.455 16 C -0.149 4.149 17 C -0.357 4.357 18 S 0.578 5.422 19 C -0.227 4.227 20 C -0.016 4.016 21 C -0.084 4.084 22 N -0.159 5.159 23 C -0.090 4.090 24 C -0.105 4.105 25 N -0.160 5.160 26 N -0.144 5.144 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.223 0.777 35 H 0.211 0.789 36 H 0.234 0.766 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.513 10.221 -22.970 26.240 hybrid contribution 1.541 -0.747 1.396 2.210 sum -5.972 9.474 -21.574 24.308 Atomic orbital electron populations 1.21675 0.96717 0.99381 1.00268 1.21783 0.94027 0.98842 1.01278 1.18479 0.93831 0.89371 0.80794 0.97676 1.21503 0.91402 1.39465 1.06839 0.91851 1.25734 1.03447 0.94115 0.94776 1.70022 1.37147 1.38065 1.09747 0.85423 0.78928 0.78453 0.77698 1.19782 1.20551 1.19103 1.46221 1.15001 1.54480 1.17794 1.17570 0.82436 0.78531 0.85869 1.90743 1.52488 1.61990 1.40286 1.20418 0.92708 1.07008 0.94760 1.27342 1.01689 1.01821 1.04837 1.82950 1.09850 1.47781 1.01646 1.25617 0.97483 1.04028 0.95600 1.19619 0.92077 0.98606 0.91345 1.23879 1.01572 0.94979 0.87930 1.68602 1.09059 1.16153 1.22082 1.24634 0.91022 0.91867 1.01493 1.24512 1.02331 0.95715 0.87895 1.68463 1.07154 1.15013 1.25392 1.66768 1.33490 1.15184 0.98946 0.94300 0.94874 0.93252 0.90417 0.94611 0.92375 0.76218 0.77725 0.78865 0.76599 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.17 16 2 C -0.12 -6.27 5.45 30.59 0.17 -6.11 16 3 C 0.28 15.27 2.24 44.24 0.10 15.36 16 4 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 5 C -0.55 -31.34 8.73 25.60 0.22 -31.11 16 6 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -53.25 11.29 21.45 0.24 -53.01 16 9 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.69 -32.91 5.02 -449.46 -2.26 -35.16 16 14 C 0.57 25.58 6.36 86.64 0.55 26.13 16 15 O -0.57 -28.29 13.81 -4.10 -0.06 -28.34 16 16 C -0.01 -0.40 6.68 41.00 0.27 -0.13 16 17 C -0.21 -5.54 10.63 67.37 0.72 -4.82 16 18 S 0.32 5.30 22.11 -56.49 -1.25 4.05 16 19 C 0.05 1.25 7.39 87.56 0.65 1.90 16 20 C 0.12 2.80 6.75 41.86 0.28 3.08 16 21 C 0.08 1.23 10.78 85.01 0.92 2.15 16 22 N -0.45 -6.76 10.49 -194.19 -2.04 -8.80 16 23 C 0.07 0.78 11.22 84.69 0.95 1.73 16 24 C 0.06 0.87 11.22 84.72 0.95 1.82 16 25 N -0.44 -10.95 10.41 -184.46 -1.92 -12.87 16 26 N -0.43 -14.47 9.99 -178.86 -1.79 -16.25 16 27 H 0.04 1.79 5.65 -2.39 -0.01 1.77 16 28 H 0.03 1.64 7.84 -2.39 -0.02 1.62 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.08 4.42 5.95 -2.39 -0.01 4.41 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.40 18.43 8.02 -92.71 -0.74 17.69 16 34 H 0.21 4.75 8.02 -2.91 -0.02 4.73 16 35 H 0.19 1.79 7.28 -2.91 -0.02 1.77 16 36 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -76.65 334.02 0.19 -76.46 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.39 Total: 21.82 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.84 Total: 6.37 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -7.76 Total: -126.10 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.25 Total: 4.05 kcal Total: -76.65 0.19 -76.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183863279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.963 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds