Wall clock time and date at job start Tue Mar 31 2020 11:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21602 * 119.99676 * 359.97438 * 14 13 3 16 16 C 1.47436 * 120.00062 * 179.97438 * 14 13 3 17 17 C 1.38726 * 120.32348 * 0.02562 * 16 14 13 18 18 C 1.38990 * 120.70750 * 180.02562 * 17 16 14 19 19 Cl 1.73605 * 119.48150 * 179.97438 * 18 17 16 20 20 C 1.36438 * 121.03167 * 0.02562 * 18 17 16 21 21 C 1.40426 * 120.08193 * 359.97438 * 20 18 17 22 22 C 1.40811 * 121.25561 * 180.02562 * 21 20 18 23 23 C 1.36642 * 118.14852 * 179.13469 * 22 21 20 24 24 C 1.39228 * 119.91124 * 0.83274 * 23 22 21 25 25 N 1.31239 * 121.69403 * 359.43700 * 24 23 22 26 26 C 1.33350 * 121.35437 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 29 29 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 30 30 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 31 31 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 32 32 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 34 34 H 1.08005 * 119.64654 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.96112 * 179.97438 * 20 18 17 36 36 H 1.07999 * 120.92394 * 359.97438 * 22 21 20 37 37 H 1.07998 * 120.04046 * 180.23001 * 23 22 21 38 38 H 1.07998 * 119.15764 * 179.41633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4315 16 6 0.0448 3.3232 2.6268 17 6 0.9255 3.3639 3.6980 18 6 0.5657 3.9823 4.8896 19 17 1.6924 4.0141 6.2099 20 6 -0.6596 4.5639 5.0382 21 6 -1.5809 4.5450 3.9785 22 6 -2.8518 5.1380 4.1047 23 6 -3.6914 5.0983 3.0274 24 6 -3.2861 4.4679 1.8541 25 7 -2.1026 3.9116 1.7436 26 6 -1.2322 3.9260 2.7538 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8295 -0.0613 -2.9496 33 1 2.2719 2.1231 1.9978 34 1 1.9009 2.9094 3.6052 35 1 -0.9213 5.0393 5.9719 36 1 -3.1494 5.6227 5.0228 37 1 -4.6719 5.5469 3.0893 38 1 -3.9631 4.4355 1.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183887825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:26 Heat of formation + Delta-G solvation = 15.017443 kcal Electronic energy + Delta-G solvation = -23804.465077 eV Core-core repulsion = 20251.813627 eV Total energy + Delta-G solvation = -3552.651450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05559 -38.82007 -37.60297 -36.13679 -35.01405 -33.51697 -32.41820 -31.19514 -30.46563 -29.88346 -26.94484 -24.80805 -23.72109 -23.50594 -22.59959 -20.32184 -19.43933 -18.39338 -17.94777 -17.13137 -16.52396 -15.56055 -15.35765 -15.06333 -14.89361 -14.43398 -14.35629 -14.08756 -13.79569 -13.20324 -13.03576 -12.94323 -12.67004 -12.49722 -12.00116 -11.82475 -11.48252 -11.24852 -11.21402 -11.03799 -10.93161 -10.82621 -10.58168 -10.27847 -10.13670 -9.63642 -9.53396 -9.00617 -8.91165 -8.79425 -8.46794 -8.38812 -7.75021 -6.09930 -4.19097 -0.01241 0.56339 1.65246 1.83616 2.50293 3.25469 3.33436 3.35966 3.64357 3.89894 4.18285 4.21167 4.35132 4.46670 4.55836 4.64461 4.71756 4.83700 5.07271 5.21639 5.27349 5.47835 5.61897 5.63781 5.79945 5.85338 6.02631 6.18710 6.44763 6.52459 6.53457 6.72054 7.10003 7.25351 7.41346 7.48592 7.65608 7.76250 7.92826 7.96829 8.21236 8.68641 8.81482 9.16997 9.48267 10.95422 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004089 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.438654 B = 6845.954583 C = 8398.936214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.500 6.500 16 C -0.073 4.073 17 C -0.071 4.071 18 C -0.033 4.033 19 Cl -0.063 7.063 20 C -0.075 4.075 21 C -0.102 4.102 22 C -0.060 4.060 23 C -0.171 4.171 24 C 0.130 3.870 25 N -0.424 5.424 26 C 0.160 3.840 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 9.051 16.026 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.321 3.679 15 O -0.376 6.376 16 C -0.078 4.078 17 C -0.093 4.093 18 C -0.060 4.060 19 Cl -0.034 7.034 20 C -0.095 4.095 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.191 4.191 24 C -0.043 4.043 25 N -0.130 5.130 26 C 0.036 3.964 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.757 8.458 14.467 19.914 hybrid contribution 1.152 0.413 1.281 1.772 sum -9.605 8.871 15.748 20.468 Atomic orbital electron populations 1.21836 0.98244 0.97981 1.01359 1.21939 0.92678 0.99726 1.02254 1.18808 0.94204 0.89163 0.80752 0.93096 1.21267 0.90685 1.38929 1.06309 0.92048 1.24873 0.98537 0.94815 0.95388 1.69907 1.34990 1.37646 1.09325 0.86418 0.84963 0.77749 0.78118 1.19739 1.20898 1.20903 1.46499 1.14243 1.56073 1.18659 1.17708 0.83391 0.80330 0.86506 1.90836 1.50587 1.57654 1.38474 1.20390 0.92507 0.99278 0.95594 1.21378 1.00260 0.97144 0.90488 1.20455 0.92214 1.02911 0.90391 1.98387 1.61099 1.97371 1.46539 1.20922 0.91482 0.98329 0.98756 1.18665 0.95676 1.01413 0.94680 1.21390 0.91795 0.96214 0.99227 1.21988 1.01288 1.01340 0.94491 1.23262 0.92895 0.91310 0.96848 1.68408 1.01830 1.14348 1.28431 1.18726 0.93433 0.95170 0.89045 0.95964 0.94268 0.93048 0.88254 0.95074 0.92639 0.78221 0.83504 0.84054 0.84190 0.84361 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.71 -14.92 4.97 -56.00 -0.28 -15.19 16 14 C 0.54 11.24 6.33 -12.51 -0.08 11.16 16 15 O -0.50 -12.06 12.32 5.28 0.06 -12.00 16 16 C -0.07 -1.25 5.90 -104.62 -0.62 -1.87 16 17 C -0.07 -0.99 9.28 -39.12 -0.36 -1.35 16 18 C -0.03 -0.39 6.27 -39.95 -0.25 -0.64 16 19 Cl -0.06 -0.66 28.91 -51.86 -1.50 -2.15 16 20 C -0.08 -0.79 9.49 -39.41 -0.37 -1.17 16 21 C -0.10 -1.25 5.74 -106.82 -0.61 -1.86 16 22 C -0.06 -0.55 9.90 -39.19 -0.39 -0.94 16 23 C -0.17 -1.53 10.03 -39.79 -0.40 -1.93 16 24 C 0.13 1.58 11.15 -17.44 -0.19 1.38 16 25 N -0.42 -7.20 8.43 -10.76 -0.09 -7.29 16 26 C 0.16 2.57 6.61 -84.58 -0.56 2.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.38 7.06 6.56 -40.82 -0.27 6.79 16 34 H 0.15 1.86 6.37 -52.48 -0.33 1.52 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -31.93 332.21 -9.49 -41.42 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.08 Total: 5.90 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.22 Total: -7.23 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.26 Total: -46.55 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -12.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.93 -9.49 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.436 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds