Wall clock time and date at job start Tue Mar 31 2020 11:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21602 * 119.99676 * 359.97438 * 14 13 3 16 16 C 1.47436 * 120.00062 * 179.97438 * 14 13 3 17 17 C 1.38726 * 120.32348 * 0.02562 * 16 14 13 18 18 C 1.38990 * 120.70750 * 180.02562 * 17 16 14 19 19 Cl 1.73605 * 119.48150 * 179.97438 * 18 17 16 20 20 C 1.36438 * 121.03167 * 0.02562 * 18 17 16 21 21 C 1.40426 * 120.08193 * 359.97438 * 20 18 17 22 22 C 1.40811 * 121.25561 * 180.02562 * 21 20 18 23 23 C 1.36642 * 118.14852 * 179.13469 * 22 21 20 24 24 C 1.39228 * 119.91124 * 0.83274 * 23 22 21 25 25 N 1.31239 * 121.69403 * 359.43700 * 24 23 22 26 26 C 1.33350 * 121.35437 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 29 29 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 30 30 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 31 31 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 32 32 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 34 34 H 1.08005 * 119.64654 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.96112 * 179.97438 * 20 18 17 36 36 H 1.07999 * 120.92394 * 359.97438 * 22 21 20 37 37 H 1.07998 * 120.04046 * 180.23001 * 23 22 21 38 38 H 1.07998 * 119.15764 * 179.41633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4315 16 6 0.0448 3.3232 2.6268 17 6 0.9255 3.3639 3.6980 18 6 0.5657 3.9823 4.8896 19 17 1.6924 4.0141 6.2099 20 6 -0.6596 4.5639 5.0382 21 6 -1.5809 4.5450 3.9785 22 6 -2.8518 5.1380 4.1047 23 6 -3.6914 5.0983 3.0274 24 6 -3.2861 4.4679 1.8541 25 7 -2.1026 3.9116 1.7436 26 6 -1.2322 3.9260 2.7538 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8295 -0.0613 -2.9496 33 1 2.2719 2.1231 1.9978 34 1 1.9009 2.9094 3.6052 35 1 -0.9213 5.0393 5.9719 36 1 -3.1494 5.6227 5.0228 37 1 -4.6719 5.5469 3.0893 38 1 -3.9631 4.4355 1.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183887825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:26 Heat of formation + Delta-G solvation = -5.016613 kcal Electronic energy + Delta-G solvation = -23805.333819 eV Core-core repulsion = 20251.813627 eV Total energy + Delta-G solvation = -3553.520192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05848 -40.36538 -38.54639 -37.10288 -36.84004 -34.56907 -34.24993 -32.91176 -31.46707 -31.06450 -28.88817 -25.90427 -25.17574 -24.53051 -24.11300 -21.93310 -21.16698 -19.54161 -19.19609 -18.20937 -17.93684 -17.07785 -16.97577 -16.33735 -16.14610 -15.94241 -15.42901 -15.34583 -15.08841 -14.60170 -14.36601 -13.94544 -13.92867 -13.75817 -13.48657 -13.42474 -13.17964 -12.87425 -12.71220 -12.69408 -12.16764 -12.07232 -12.06516 -11.96141 -11.62760 -11.51575 -11.04497 -10.88141 -10.54238 -10.08463 -9.82616 -9.64502 -9.31101 -8.15785 -6.33239 -0.96198 -0.35538 0.74016 0.95494 1.44071 1.44960 1.54345 1.57080 2.31174 2.34764 2.55684 3.08346 3.13932 3.26230 3.50184 3.64191 3.76613 3.92440 4.00788 4.13484 4.38897 4.48016 4.54936 4.55616 4.60841 4.75816 4.76022 4.88838 4.96177 5.05986 5.17369 5.24924 5.30337 5.43575 5.55247 5.62119 5.70925 5.78984 5.93398 6.16364 6.74185 6.95630 7.08549 7.33741 7.58761 8.90020 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004089 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.438654 B = 6845.954583 C = 8398.936214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.543 6.543 16 C -0.119 4.119 17 C -0.054 4.054 18 C -0.051 4.051 19 Cl -0.047 7.047 20 C -0.041 4.041 21 C -0.115 4.115 22 C -0.043 4.043 23 C -0.164 4.164 24 C 0.124 3.876 25 N -0.496 5.496 26 C 0.137 3.863 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.398 0.602 34 H 0.150 0.850 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.183 0.817 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 10.709 19.754 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.422 6.422 16 C -0.123 4.123 17 C -0.075 4.075 18 C -0.078 4.078 19 Cl -0.018 7.018 20 C -0.060 4.060 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.184 4.184 24 C -0.047 4.047 25 N -0.204 5.204 26 C 0.014 3.986 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.168 0.832 35 H 0.203 0.797 36 H 0.208 0.792 37 H 0.201 0.799 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.398 10.130 18.240 23.774 hybrid contribution 1.196 0.001 0.192 1.211 sum -10.202 10.131 18.432 23.376 Atomic orbital electron populations 1.21642 0.97134 0.98914 1.00049 1.21782 0.93547 0.99160 1.01321 1.18370 0.93744 0.89060 0.80988 0.98422 1.21593 0.91245 1.38977 1.06805 0.91090 1.25765 1.03355 0.94300 0.94936 1.70060 1.37010 1.38334 1.09861 0.85317 0.79053 0.77879 0.78208 1.18450 1.20320 1.21000 1.46243 1.15144 1.56411 1.17749 1.18319 0.82357 0.79371 0.87704 1.90790 1.51642 1.59226 1.40519 1.19983 0.94743 1.02961 0.94656 1.21421 0.99560 0.96012 0.90551 1.20421 0.93370 1.03799 0.90164 1.98393 1.60735 1.97375 1.45330 1.21404 0.89915 0.95284 0.99377 1.18938 0.97641 1.01674 0.93557 1.21979 0.89797 0.94204 1.00906 1.22377 1.03041 1.00092 0.92867 1.23767 0.91748 0.90304 0.98906 1.68310 1.04041 1.17605 1.30401 1.18904 0.92992 0.96025 0.90647 0.93654 0.94373 0.95554 0.90753 0.94099 0.92582 0.76657 0.83233 0.79743 0.79229 0.79938 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.15 5.45 30.59 0.17 -5.99 16 3 C 0.28 15.12 2.24 44.24 0.10 15.22 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -29.82 8.73 25.60 0.22 -29.60 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -53.30 11.29 21.45 0.24 -53.06 16 9 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.70 -31.57 4.97 -449.35 -2.23 -33.81 16 14 C 0.54 24.03 6.33 86.67 0.55 24.58 16 15 O -0.54 -28.50 12.32 -4.04 -0.05 -28.55 16 16 C -0.12 -4.23 5.90 -19.86 -0.12 -4.34 16 17 C -0.05 -1.50 9.28 22.57 0.21 -1.29 16 18 C -0.05 -1.08 6.27 22.03 0.14 -0.94 16 19 Cl -0.05 -0.86 28.91 -2.72 -0.08 -0.94 16 20 C -0.04 -0.70 9.49 22.38 0.21 -0.49 16 21 C -0.12 -2.52 5.74 -21.29 -0.12 -2.64 16 22 C -0.04 -0.59 9.90 22.53 0.22 -0.37 16 23 C -0.16 -2.34 10.03 22.13 0.22 -2.12 16 24 C 0.12 2.95 11.15 85.02 0.95 3.90 16 25 N -0.50 -17.51 8.43 -187.95 -1.59 -19.10 16 26 C 0.14 4.48 6.61 40.62 0.27 4.75 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.83 5.64 -2.39 -0.01 1.81 16 29 H 0.03 1.36 7.84 -2.38 -0.02 1.34 16 30 H 0.07 4.23 5.95 -2.38 -0.01 4.22 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.40 15.24 6.56 -92.71 -0.61 14.63 16 34 H 0.15 3.81 6.37 -2.91 -0.02 3.79 16 35 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.19 0.70 8.06 -2.91 -0.02 0.67 16 37 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.58 332.21 2.91 -73.67 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.50 Total: 20.09 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.08 Total: -3.16 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.58 Total: -105.96 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -76.58 2.91 -73.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.658 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds