Wall clock time and date at job start Tue Mar 31 2020 12:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47270 * 2 1 4 4 C 1.53001 * 109.46863 * 120.00140 * 2 1 3 5 5 N 1.46495 * 109.47303 * 294.99964 * 4 2 1 6 6 S 1.65591 * 120.00357 * 165.00281 * 5 4 2 7 7 O 1.42102 * 104.28316 * 181.07077 * 6 5 4 8 8 O 1.42099 * 104.27562 * 308.92978 * 6 5 4 9 9 C 1.81401 * 104.45097 * 64.99719 * 6 5 4 10 10 C 1.53000 * 109.47561 * 180.02562 * 9 6 5 11 11 C 1.52993 * 109.47333 * 180.02562 * 10 9 6 12 12 C 1.50705 * 109.47130 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99829 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99929 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00143 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46993 * 60.00431 * 16 14 12 18 18 H 1.48498 * 109.47048 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47403 * 300.00058 * 16 14 12 20 20 C 1.50701 * 109.47052 * 240.00227 * 2 1 3 21 21 N 1.29022 * 124.91373 * 299.69734 * 20 2 1 22 22 C 1.31789 * 117.12256 * 180.26689 * 21 20 2 23 23 C 1.33637 * 114.50004 * 359.97438 * 22 21 20 24 24 S 1.70978 * 124.91683 * 120.00098 * 20 2 1 25 25 H 1.09005 * 109.47298 * 299.99996 * 1 2 3 26 26 H 1.09001 * 109.47205 * 59.99632 * 1 2 3 27 27 H 1.08998 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47257 * 55.00261 * 4 2 1 29 29 H 1.09001 * 109.46952 * 174.99870 * 4 2 1 30 30 H 0.97002 * 119.99841 * 344.99941 * 5 4 2 31 31 H 1.09005 * 109.47150 * 300.00525 * 9 6 5 32 32 H 1.09001 * 109.47041 * 60.00053 * 9 6 5 33 33 H 1.09005 * 109.47055 * 300.00262 * 10 9 6 34 34 H 1.09001 * 109.47162 * 59.99806 * 10 9 6 35 35 H 1.09000 * 109.46881 * 299.99502 * 11 10 9 36 36 H 1.08994 * 109.47313 * 60.00049 * 11 10 9 37 37 H 0.97000 * 119.99802 * 180.02562 * 15 14 12 38 38 H 1.08002 * 122.74893 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.03336 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0352 2.4424 6 16 1.7355 -0.6746 3.9361 7 8 1.2684 0.3287 4.8275 8 8 1.0344 -1.9007 3.7809 9 6 3.5047 -0.9813 4.1938 10 6 3.7144 -1.6438 5.5569 11 6 5.2066 -1.9018 5.7744 12 6 5.4130 -2.5550 7.1168 13 1 4.5647 -2.7646 7.7515 14 6 6.6848 -2.8849 7.5347 15 7 7.7179 -2.6292 6.7620 16 14 6.9407 -3.6938 9.1989 17 1 6.2036 -4.9823 9.2416 18 1 8.3891 -3.9444 9.4100 19 1 6.4330 -2.7973 10.2684 20 6 2.0323 -0.7104 -1.2305 21 7 1.7843 -1.9417 -1.5253 22 6 2.3074 -2.4096 -2.6407 23 6 3.0369 -1.5234 -3.3251 24 16 3.0195 -0.0033 -2.4343 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -1.7199 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 1.3471 0.9520 2.3574 31 1 3.8774 -1.6397 3.4090 32 1 4.0458 -0.0356 4.1620 33 1 3.3416 -0.9857 6.3419 34 1 3.1733 -2.5895 5.5883 35 1 5.5797 -2.5598 4.9895 36 1 5.7473 -0.9560 5.7432 37 1 8.6126 -2.8616 7.0559 38 1 2.1581 -3.4258 -2.9748 39 1 3.5477 -1.7069 -4.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186674828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:31 Heat of formation + Delta-G solvation = -49.175546 kcal Electronic energy + Delta-G solvation = -21729.510255 eV Core-core repulsion = 18311.562845 eV Total energy + Delta-G solvation = -3417.947409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13388 -37.17400 -36.74751 -35.72999 -34.66215 -32.96115 -32.18054 -29.71064 -27.80385 -26.66893 -25.38274 -23.71800 -22.35519 -20.68982 -19.73179 -19.37984 -18.35584 -17.33098 -16.70389 -16.36554 -15.87858 -15.72407 -15.20900 -15.17521 -14.70157 -14.48126 -14.23801 -14.00568 -13.72439 -13.09821 -12.59077 -12.32575 -12.24544 -12.12005 -11.92450 -11.89777 -11.81436 -11.76719 -11.63874 -11.37956 -11.21456 -10.89071 -10.86613 -10.43973 -9.94160 -9.92261 -9.78952 -9.68551 -9.33119 -9.24214 -9.08217 -8.39879 -6.05051 -4.08152 0.32455 0.48738 1.00325 1.39187 2.51157 2.83203 3.32805 3.36525 3.39835 3.73561 3.94161 4.34608 4.42985 4.46494 4.47175 4.66132 4.86088 5.00938 5.07161 5.15231 5.20183 5.28134 5.31493 5.43175 5.49443 5.54397 5.77677 5.80263 5.90443 6.00519 6.27674 6.45714 6.84929 6.88783 7.40956 7.57352 7.67550 7.92897 8.33442 8.97895 9.56509 11.06158 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002780 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.482190 B =10069.535373 C =11238.314614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 H 0.098 0.902 4 C 0.127 3.873 5 N -1.124 6.124 6 S 2.602 3.398 7 O -0.962 6.962 8 O -0.959 6.959 9 C -0.609 4.609 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.055 3.945 21 N -0.465 5.465 22 C 0.042 3.958 23 C -0.261 4.261 24 S 0.122 5.878 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.414 0.586 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.177 0.823 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 7.594 -22.331 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 H 0.116 0.884 4 C -0.002 4.002 5 N -0.882 5.882 6 S 2.698 3.302 7 O -0.953 6.953 8 O -0.949 6.949 9 C -0.741 4.741 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.224 4.224 21 N -0.179 5.179 22 C -0.109 4.109 23 C -0.400 4.400 24 S 0.376 5.624 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.194 0.806 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.419 7.872 -21.606 25.675 hybrid contribution 0.885 -0.939 0.037 1.291 sum -10.534 6.933 -21.569 24.985 Atomic orbital electron populations 1.21824 0.92005 1.03878 1.02287 1.20004 0.97825 0.98166 0.88079 0.88401 1.21280 0.99694 0.96180 0.83005 1.55720 1.83661 1.26099 1.22754 1.05286 0.78434 0.74147 0.72379 1.93581 1.79779 1.59024 1.62899 1.93577 1.70160 1.46383 1.84750 1.30548 1.23376 1.11043 1.09148 1.21502 1.04087 0.99166 0.89794 1.19055 0.87333 0.97251 0.97102 1.21224 0.92778 1.39900 1.02622 0.92401 1.25016 0.96079 0.95800 0.97455 1.69947 0.98753 1.47722 1.37051 0.86613 0.76988 0.80012 0.84163 1.20103 1.21255 1.20113 1.26940 1.00566 0.93570 1.01328 1.66216 1.22868 1.11533 1.17294 1.21871 0.96884 1.01664 0.90508 1.27120 1.09604 0.96099 1.07197 1.84084 1.47069 1.14941 1.16261 0.91070 0.92343 0.90929 0.88755 0.91379 0.75168 0.85549 0.85256 0.91547 0.91528 0.96144 0.96128 0.92850 0.80563 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.06 37.16 0.34 -0.78 16 2 C -0.02 -0.14 2.85 -91.77 -0.26 -0.40 16 3 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 4 C 0.13 1.23 5.50 -4.04 -0.02 1.21 16 5 N -1.12 -11.31 5.41 -10.61 -0.06 -11.37 16 6 S 2.60 37.37 5.46 -107.50 -0.59 36.78 16 7 O -0.96 -16.47 18.08 -57.54 -1.04 -17.51 16 8 O -0.96 -16.83 17.50 -57.54 -1.01 -17.83 16 9 C -0.61 -9.29 6.07 37.16 0.23 -9.06 16 10 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 11 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 12 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.05 0.50 5.91 -13.46 -0.08 0.42 16 21 N -0.47 -4.90 10.53 -11.86 -0.12 -5.02 16 22 C 0.04 0.35 11.35 -19.18 -0.22 0.14 16 23 C -0.26 -1.83 11.37 29.12 0.33 -1.50 16 24 S 0.12 0.89 23.17 -107.50 -2.49 -1.61 16 25 H 0.07 0.51 7.54 -51.93 -0.39 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.41 3.17 8.33 -34.46 -0.29 2.88 16 31 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -36.12 358.21 -10.26 -46.38 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.69 Total: -0.65 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -0.38 Total: -25.28 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.55 Total: -42.32 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -2.05 Total: -35.35 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 38.26 SS G_CDS: -3.08 Total: 35.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.12 -10.26 -46.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186674828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.799 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds