Wall clock time and date at job start Tue Mar 31 2020 12:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47270 * 2 1 4 4 C 1.53001 * 109.46863 * 120.00140 * 2 1 3 5 5 N 1.46495 * 109.47303 * 294.99964 * 4 2 1 6 6 S 1.65591 * 120.00357 * 165.00281 * 5 4 2 7 7 O 1.42102 * 104.28316 * 181.07077 * 6 5 4 8 8 O 1.42099 * 104.27562 * 308.92978 * 6 5 4 9 9 C 1.81401 * 104.45097 * 64.99719 * 6 5 4 10 10 C 1.53000 * 109.47561 * 180.02562 * 9 6 5 11 11 C 1.52993 * 109.47333 * 180.02562 * 10 9 6 12 12 C 1.50705 * 109.47130 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99829 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99929 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00143 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46993 * 60.00431 * 16 14 12 18 18 H 1.48498 * 109.47048 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47403 * 300.00058 * 16 14 12 20 20 C 1.50701 * 109.47052 * 240.00227 * 2 1 3 21 21 N 1.29022 * 124.91373 * 299.69734 * 20 2 1 22 22 C 1.31789 * 117.12256 * 180.26689 * 21 20 2 23 23 C 1.33637 * 114.50004 * 359.97438 * 22 21 20 24 24 S 1.70978 * 124.91683 * 120.00098 * 20 2 1 25 25 H 1.09005 * 109.47298 * 299.99996 * 1 2 3 26 26 H 1.09001 * 109.47205 * 59.99632 * 1 2 3 27 27 H 1.08998 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47257 * 55.00261 * 4 2 1 29 29 H 1.09001 * 109.46952 * 174.99870 * 4 2 1 30 30 H 0.97002 * 119.99841 * 344.99941 * 5 4 2 31 31 H 1.09005 * 109.47150 * 300.00525 * 9 6 5 32 32 H 1.09001 * 109.47041 * 60.00053 * 9 6 5 33 33 H 1.09005 * 109.47055 * 300.00262 * 10 9 6 34 34 H 1.09001 * 109.47162 * 59.99806 * 10 9 6 35 35 H 1.09000 * 109.46881 * 299.99502 * 11 10 9 36 36 H 1.08994 * 109.47313 * 60.00049 * 11 10 9 37 37 H 0.97000 * 119.99802 * 180.02562 * 15 14 12 38 38 H 1.08002 * 122.74893 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.03336 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0352 2.4424 6 16 1.7355 -0.6746 3.9361 7 8 1.2684 0.3287 4.8275 8 8 1.0344 -1.9007 3.7809 9 6 3.5047 -0.9813 4.1938 10 6 3.7144 -1.6438 5.5569 11 6 5.2066 -1.9018 5.7744 12 6 5.4130 -2.5550 7.1168 13 1 4.5647 -2.7646 7.7515 14 6 6.6848 -2.8849 7.5347 15 7 7.7179 -2.6292 6.7620 16 14 6.9407 -3.6938 9.1989 17 1 6.2036 -4.9823 9.2416 18 1 8.3891 -3.9444 9.4100 19 1 6.4330 -2.7973 10.2684 20 6 2.0323 -0.7104 -1.2305 21 7 1.7843 -1.9417 -1.5253 22 6 2.3074 -2.4096 -2.6407 23 6 3.0369 -1.5234 -3.3251 24 16 3.0195 -0.0033 -2.4343 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -1.7199 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 1.3471 0.9520 2.3574 31 1 3.8774 -1.6397 3.4090 32 1 4.0458 -0.0356 4.1620 33 1 3.3416 -0.9857 6.3419 34 1 3.1733 -2.5895 5.5883 35 1 5.5797 -2.5598 4.9895 36 1 5.7473 -0.9560 5.7432 37 1 8.6126 -2.8616 7.0559 38 1 2.1581 -3.4258 -2.9748 39 1 3.5477 -1.7069 -4.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186674828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:30 Heat of formation + Delta-G solvation = -75.863474 kcal Electronic energy + Delta-G solvation = -21730.667530 eV Core-core repulsion = 18311.562845 eV Total energy + Delta-G solvation = -3419.104685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74998 -38.24846 -37.71959 -37.03319 -36.46403 -34.16384 -33.72837 -30.31577 -29.65136 -27.35879 -26.06659 -25.61981 -22.99376 -22.43410 -20.49839 -20.33731 -19.17178 -18.61699 -18.28276 -17.50118 -17.15861 -16.51757 -16.43622 -16.29565 -15.93323 -15.63961 -15.25120 -14.84086 -14.47753 -14.34689 -14.08043 -13.81997 -13.52094 -13.21245 -13.16053 -13.10214 -12.97168 -12.84265 -12.73146 -12.64204 -12.46909 -12.37296 -12.16496 -12.02179 -11.74197 -11.39151 -11.13368 -10.57196 -10.53909 -10.44312 -10.29660 -9.81429 -8.22769 -6.33863 -0.74715 -0.22520 0.44041 0.81571 1.40071 1.42704 1.50592 1.75812 1.91971 2.39801 2.75638 3.10709 3.13831 3.25611 3.70545 3.76610 3.87700 3.93928 4.02094 4.39577 4.41810 4.42834 4.44628 4.59278 4.66202 4.69755 4.80002 4.91291 4.96746 5.06259 5.09186 5.20858 5.38778 5.45124 5.62939 5.79271 6.12716 6.19631 6.81613 6.82386 7.35444 8.88542 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002780 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.482190 B =10069.535373 C =11238.314614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.015 4.015 3 H 0.126 0.874 4 C 0.120 3.880 5 N -1.104 6.104 6 S 2.633 3.367 7 O -0.988 6.988 8 O -0.991 6.991 9 C -0.611 4.611 10 C -0.107 4.107 11 C 0.031 3.969 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.034 3.966 21 N -0.498 5.498 22 C 0.018 3.982 23 C -0.255 4.255 24 S 0.152 5.848 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.429 0.571 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.001 0.999 36 H 0.004 0.996 37 H 0.265 0.735 38 H 0.190 0.810 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 8.471 -23.148 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 H 0.144 0.856 4 C -0.007 4.007 5 N -0.867 5.867 6 S 2.728 3.272 7 O -0.978 6.978 8 O -0.980 6.980 9 C -0.742 4.742 10 C -0.147 4.147 11 C -0.007 4.007 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.244 4.244 21 N -0.213 5.213 22 C -0.133 4.133 23 C -0.394 4.394 24 S 0.406 5.594 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.267 0.733 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.020 0.980 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.206 0.794 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.463 8.763 -22.416 26.658 hybrid contribution 0.913 -1.189 0.163 1.508 sum -10.550 7.574 -22.253 25.765 Atomic orbital electron populations 1.21816 0.92170 1.02740 1.03212 1.20054 0.97728 0.99209 0.86821 0.85606 1.21396 1.00474 0.95495 0.83383 1.55213 1.83303 1.26825 1.21316 1.04111 0.77276 0.73104 0.72685 1.93543 1.80048 1.59588 1.64598 1.93541 1.70761 1.48224 1.85516 1.30516 1.25062 1.11993 1.06605 1.21317 1.00467 0.99874 0.92996 1.18953 0.90591 0.95648 0.95494 1.21728 0.93210 1.40275 1.04017 0.92156 1.25932 0.95809 0.96336 1.01445 1.70063 0.99223 1.48696 1.38977 0.85538 0.77179 0.79197 0.79401 1.19276 1.20589 1.19173 1.27078 1.01419 0.93629 1.02235 1.66217 1.23950 1.12629 1.18490 1.22163 0.97746 1.02759 0.90590 1.27493 1.08538 0.95635 1.07703 1.83930 1.45796 1.14470 1.15187 0.90397 0.91150 0.93097 0.90741 0.90089 0.73302 0.84060 0.83230 0.91381 0.91677 0.98016 0.97767 0.92621 0.79356 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.06 71.98 0.65 -1.40 16 2 C -0.01 -0.21 2.85 -11.54 -0.03 -0.24 16 3 H 0.13 1.06 8.12 -2.39 -0.02 1.04 16 4 C 0.12 2.19 5.50 86.38 0.47 2.66 16 5 N -1.10 -20.33 5.41 -187.50 -1.02 -21.35 16 6 S 2.63 73.22 5.46 -56.49 -0.31 72.91 16 7 O -0.99 -32.74 18.08 -127.65 -2.31 -35.05 16 8 O -0.99 -34.55 17.50 -127.65 -2.23 -36.78 16 9 C -0.61 -18.10 6.07 71.98 0.44 -17.66 16 10 C -0.11 -4.38 5.16 30.59 0.16 -4.22 16 11 C 0.03 1.63 4.97 29.85 0.15 1.78 16 12 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 16 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C 0.03 0.58 5.91 88.52 0.52 1.10 16 21 N -0.50 -10.25 10.53 -191.44 -2.02 -12.27 16 22 C 0.02 0.28 11.35 83.65 0.95 1.23 16 23 C -0.25 -3.08 11.37 66.78 0.76 -2.32 16 24 S 0.15 1.88 23.17 -56.49 -1.31 0.57 16 25 H 0.08 1.00 7.54 -2.38 -0.02 0.98 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.69 7.69 -2.39 -0.02 1.68 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.43 5.53 8.33 -96.75 -0.81 4.72 16 31 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -78.07 358.21 -1.87 -79.94 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.24 Total: 11.23 kcal Atomic # 6 Polarization: -54.69 SS G_CDS: 4.76 Total: -49.93 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -2.75 Total: -89.26 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -4.54 Total: -71.83 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 75.10 SS G_CDS: -1.62 Total: 73.48 kcal Total: -78.07 -1.87 -79.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186674828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.075 kcal (2) G-P(sol) polarization free energy of solvation -78.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds