Wall clock time and date at job start Tue Mar 31 2020 12:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46497 * 109.46926 * 65.00537 * 4 2 1 6 6 S 1.65602 * 120.00277 * 164.99709 * 5 4 2 7 7 O 1.42100 * 104.28014 * 181.06860 * 6 5 4 8 8 O 1.42097 * 104.27886 * 308.93116 * 6 5 4 9 9 C 1.81405 * 104.44759 * 64.99967 * 6 5 4 10 10 C 1.52994 * 109.47258 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47397 * 179.97438 * 10 9 6 12 12 C 1.50697 * 109.47050 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99786 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00186 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47125 * 90.00142 * 16 14 12 18 18 H 1.48498 * 109.46761 * 209.99942 * 16 14 12 19 19 H 1.48490 * 109.46961 * 329.99866 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 N 1.29021 * 124.91824 * 240.00316 * 20 2 1 22 22 C 1.31782 * 117.13006 * 179.97438 * 21 20 2 23 23 C 1.33645 * 114.49803 * 359.97438 * 22 21 20 24 24 S 1.70979 * 124.91513 * 59.69468 * 20 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97002 * 120.00211 * 344.99409 * 5 4 2 31 31 H 1.09002 * 109.46749 * 300.00109 * 9 6 5 32 32 H 1.09001 * 109.47350 * 59.99560 * 9 6 5 33 33 H 1.08997 * 109.47549 * 299.99965 * 10 9 6 34 34 H 1.09002 * 109.46940 * 59.99620 * 10 9 6 35 35 H 1.09002 * 109.46741 * 300.00019 * 11 10 9 36 36 H 1.08997 * 109.46746 * 59.99503 * 11 10 9 37 37 H 0.96996 * 120.00459 * 179.97438 * 15 14 12 38 38 H 1.07994 * 122.75497 * 180.02562 * 22 21 20 39 39 H 1.07997 * 126.03884 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 16 2.3701 -0.2907 -3.8988 7 8 1.7752 0.6353 -4.7976 8 8 3.7629 -0.2499 -3.6203 9 6 1.8489 -1.9833 -4.2913 10 6 2.4550 -2.4059 -5.6310 11 6 2.0159 -3.8337 -5.9618 12 6 2.6135 -4.2501 -7.2811 13 1 3.2431 -3.5648 -7.8290 14 6 2.3564 -5.5060 -7.7886 15 7 1.5901 -6.3408 -7.1211 16 14 3.0965 -6.0220 -9.4243 17 1 4.4178 -6.6585 -9.1910 18 1 2.1916 -6.9908 -10.0934 19 1 3.2685 -4.8269 -10.2887 20 6 2.0323 -0.7104 1.2305 21 7 2.7772 -0.1769 2.1389 22 6 3.1277 -0.9411 3.1537 23 6 2.6516 -2.1886 3.0985 24 16 1.6915 -2.3379 1.6286 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.9757 0.7272 -2.3793 31 1 2.1916 -2.6598 -3.5083 32 1 0.7614 -2.0230 -4.3554 33 1 2.1127 -1.7295 -6.4142 34 1 3.5424 -2.3663 -5.5664 35 1 2.3586 -4.5099 -5.1786 36 1 0.9285 -3.8737 -6.0262 37 1 1.4089 -7.2242 -7.4783 38 1 3.7482 -0.5880 3.9641 39 1 2.8220 -2.9666 3.8278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186674846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:34 Heat of formation + Delta-G solvation = -48.635502 kcal Electronic energy + Delta-G solvation = -21733.226735 eV Core-core repulsion = 18315.302744 eV Total energy + Delta-G solvation = -3417.923991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07502 -37.32325 -36.82900 -35.77341 -34.68731 -32.99605 -32.20011 -29.86136 -27.82832 -26.78649 -25.28321 -23.74473 -21.89343 -20.77770 -20.42051 -19.29497 -18.21973 -17.38472 -16.73192 -16.53714 -15.98556 -15.72400 -15.24438 -15.16449 -14.52643 -14.43729 -14.32035 -14.10922 -13.72493 -13.34741 -12.61601 -12.39780 -12.29211 -12.12582 -11.97836 -11.91831 -11.83284 -11.79280 -11.67053 -11.44110 -11.24324 -10.93118 -10.86416 -10.44749 -9.97131 -9.96554 -9.81896 -9.71096 -9.34897 -9.23111 -9.10433 -8.41714 -6.06790 -4.09781 0.32211 0.45334 1.02259 1.42890 2.49007 2.77205 3.29902 3.36082 3.40208 3.67627 3.91901 4.24534 4.38707 4.41704 4.49994 4.66419 4.86719 4.97470 5.00085 5.13675 5.15858 5.17101 5.25131 5.29854 5.41530 5.49573 5.69569 5.76453 5.79624 5.87248 6.25141 6.43069 6.80252 6.86121 7.39671 7.55624 7.65479 7.91270 8.31746 8.96484 9.55052 11.04415 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002834 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.905689 B = 9878.249340 C =10941.919582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 H 0.112 0.888 4 C 0.120 3.880 5 N -1.123 6.123 6 S 2.600 3.400 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.608 4.608 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.053 3.947 21 N -0.472 5.472 22 C 0.037 3.963 23 C -0.262 4.262 24 S 0.136 5.864 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.415 0.585 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.261 0.739 38 H 0.176 0.824 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 10.243 21.678 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.046 4.046 3 H 0.130 0.870 4 C -0.008 4.008 5 N -0.881 5.881 6 S 2.696 3.304 7 O -0.951 6.951 8 O -0.950 6.950 9 C -0.740 4.740 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.226 4.226 21 N -0.186 5.186 22 C -0.114 4.114 23 C -0.401 4.401 24 S 0.390 5.610 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.250 0.750 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.193 0.807 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.889 10.306 20.687 23.292 hybrid contribution 0.298 -0.515 0.297 0.665 sum -2.591 9.792 20.984 23.301 Atomic orbital electron populations 1.21977 0.92417 1.03238 1.03254 1.19989 0.96760 1.00499 0.87371 0.86989 1.21381 1.01351 0.94407 0.83668 1.55718 1.58116 1.50315 1.23958 1.05342 0.74569 0.77902 0.72568 1.93585 1.78398 1.60240 1.62895 1.93575 1.31044 1.87045 1.83342 1.30544 1.12148 1.21822 1.09527 1.21508 0.99863 1.02970 0.90237 1.19061 0.96946 0.87971 0.96768 1.21254 1.30519 0.99421 1.05266 0.92365 1.25016 0.95140 0.96593 0.97605 1.69952 1.37389 1.07442 1.38657 0.86558 0.79016 0.78505 0.83752 1.20566 1.21174 1.19740 1.26926 1.00020 0.95496 1.00120 1.66274 1.12859 1.37124 1.02315 1.21824 1.01922 0.89764 0.97861 1.27180 1.06905 1.02666 1.03338 1.84172 1.47199 1.12727 1.16935 0.91568 0.90646 0.91594 0.89383 0.91052 0.74993 0.85499 0.85147 0.91520 0.91539 0.96117 0.96098 0.92898 0.80663 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.96 37.16 0.33 -0.60 16 2 C -0.02 -0.18 2.92 -91.77 -0.27 -0.45 16 3 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.10 5.39 -4.04 -0.02 1.07 16 5 N -1.12 -11.02 5.76 -10.62 -0.06 -11.08 16 6 S 2.60 36.50 5.46 -107.50 -0.59 35.91 16 7 O -0.96 -16.25 18.08 -57.54 -1.04 -17.29 16 8 O -0.96 -16.58 17.50 -57.54 -1.01 -17.59 16 9 C -0.61 -8.90 6.07 37.15 0.23 -8.68 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 12 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.05 0.49 6.03 -13.46 -0.08 0.41 16 21 N -0.47 -5.02 10.54 -11.86 -0.13 -5.14 16 22 C 0.04 0.32 11.35 -19.18 -0.22 0.10 16 23 C -0.26 -1.91 11.37 29.12 0.33 -1.58 16 24 S 0.14 1.08 22.67 -107.50 -2.44 -1.36 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.39 6.90 -51.93 -0.36 0.03 16 27 H 0.07 0.39 7.92 -51.93 -0.41 -0.03 16 28 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 29 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.42 3.18 7.37 -34.47 -0.25 2.92 16 31 H 0.13 1.63 8.14 -51.92 -0.42 1.20 16 32 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -36.05 356.24 -10.17 -46.23 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.61 Total: -1.07 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -0.39 Total: -24.82 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.55 Total: -41.83 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -2.05 Total: -34.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -3.02 Total: 34.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.05 -10.17 -46.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186674846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.408 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds