Wall clock time and date at job start Tue Mar 31 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46497 * 109.46926 * 65.00537 * 4 2 1 6 6 S 1.65602 * 120.00277 * 164.99709 * 5 4 2 7 7 O 1.42100 * 104.28014 * 181.06860 * 6 5 4 8 8 O 1.42097 * 104.27886 * 308.93116 * 6 5 4 9 9 C 1.81405 * 104.44759 * 64.99967 * 6 5 4 10 10 C 1.52994 * 109.47258 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47397 * 179.97438 * 10 9 6 12 12 C 1.50697 * 109.47050 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99786 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00186 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47125 * 90.00142 * 16 14 12 18 18 H 1.48498 * 109.46761 * 209.99942 * 16 14 12 19 19 H 1.48490 * 109.46961 * 329.99866 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 N 1.29021 * 124.91824 * 240.00316 * 20 2 1 22 22 C 1.31782 * 117.13006 * 179.97438 * 21 20 2 23 23 C 1.33645 * 114.49803 * 359.97438 * 22 21 20 24 24 S 1.70979 * 124.91513 * 59.69468 * 20 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97002 * 120.00211 * 344.99409 * 5 4 2 31 31 H 1.09002 * 109.46749 * 300.00109 * 9 6 5 32 32 H 1.09001 * 109.47350 * 59.99560 * 9 6 5 33 33 H 1.08997 * 109.47549 * 299.99965 * 10 9 6 34 34 H 1.09002 * 109.46940 * 59.99620 * 10 9 6 35 35 H 1.09002 * 109.46741 * 300.00019 * 11 10 9 36 36 H 1.08997 * 109.46746 * 59.99503 * 11 10 9 37 37 H 0.96996 * 120.00459 * 179.97438 * 15 14 12 38 38 H 1.07994 * 122.75497 * 180.02562 * 22 21 20 39 39 H 1.07997 * 126.03884 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 16 2.3701 -0.2907 -3.8988 7 8 1.7752 0.6353 -4.7976 8 8 3.7629 -0.2499 -3.6203 9 6 1.8489 -1.9833 -4.2913 10 6 2.4550 -2.4059 -5.6310 11 6 2.0159 -3.8337 -5.9618 12 6 2.6135 -4.2501 -7.2811 13 1 3.2431 -3.5648 -7.8290 14 6 2.3564 -5.5060 -7.7886 15 7 1.5901 -6.3408 -7.1211 16 14 3.0965 -6.0220 -9.4243 17 1 4.4178 -6.6585 -9.1910 18 1 2.1916 -6.9908 -10.0934 19 1 3.2685 -4.8269 -10.2887 20 6 2.0323 -0.7104 1.2305 21 7 2.7772 -0.1769 2.1389 22 6 3.1277 -0.9411 3.1537 23 6 2.6516 -2.1886 3.0985 24 16 1.6915 -2.3379 1.6286 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.9757 0.7272 -2.3793 31 1 2.1916 -2.6598 -3.5083 32 1 0.7614 -2.0230 -4.3554 33 1 2.1127 -1.7295 -6.4142 34 1 3.5424 -2.3663 -5.5664 35 1 2.3586 -4.5099 -5.1786 36 1 0.9285 -3.8737 -6.0262 37 1 1.4089 -7.2242 -7.4783 38 1 3.7482 -0.5880 3.9641 39 1 2.8220 -2.9666 3.8278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186674846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:33 Heat of formation + Delta-G solvation = -75.191775 kcal Electronic energy + Delta-G solvation = -21734.378301 eV Core-core repulsion = 18315.302744 eV Total energy + Delta-G solvation = -3419.075558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71106 -38.28449 -37.85417 -37.04618 -36.44628 -34.14753 -33.74522 -30.46255 -29.63625 -27.41137 -25.95658 -25.60782 -22.53751 -22.41825 -21.13679 -20.35819 -19.05343 -18.61667 -18.26619 -17.57590 -17.16644 -16.64443 -16.48982 -16.29537 -15.84738 -15.61029 -15.12078 -14.91900 -14.48155 -14.41657 -14.05448 -13.88826 -13.48997 -13.23137 -13.16514 -13.08770 -12.95397 -12.89007 -12.74905 -12.61395 -12.50457 -12.33930 -12.13557 -12.06679 -11.72388 -11.36385 -11.11873 -10.62812 -10.55991 -10.46568 -10.33330 -9.83398 -8.21608 -6.32106 -0.75554 -0.24928 0.42465 0.81904 1.41088 1.41369 1.52773 1.71855 1.89537 2.40631 2.75312 3.06072 3.12089 3.27496 3.58460 3.78203 3.88304 3.95543 4.07815 4.35633 4.38544 4.41060 4.43906 4.55821 4.65775 4.68439 4.74495 4.92484 4.98536 5.07067 5.09735 5.22120 5.28338 5.47488 5.65748 5.81359 6.08534 6.21584 6.77650 6.83621 7.37103 8.89741 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002834 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.905689 B = 9878.249340 C =10941.919582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 H 0.107 0.893 4 C 0.112 3.888 5 N -1.105 6.105 6 S 2.631 3.369 7 O -0.988 6.988 8 O -0.992 6.992 9 C -0.608 4.608 10 C -0.108 4.108 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.059 0.941 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.037 3.963 21 N -0.502 5.502 22 C 0.018 3.982 23 C -0.255 4.255 24 S 0.145 5.855 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.428 0.572 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.004 0.996 36 H 0.005 0.995 37 H 0.265 0.735 38 H 0.194 0.806 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 10.211 22.294 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.042 4.042 3 H 0.125 0.875 4 C -0.015 4.015 5 N -0.867 5.867 6 S 2.726 3.274 7 O -0.979 6.979 8 O -0.982 6.982 9 C -0.739 4.739 10 C -0.147 4.147 11 C -0.007 4.007 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.241 4.241 21 N -0.217 5.217 22 C -0.132 4.132 23 C -0.394 4.394 24 S 0.399 5.601 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.266 0.734 31 H 0.165 0.835 32 H 0.170 0.830 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.074 0.926 38 H 0.211 0.789 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.190 10.290 21.299 23.869 hybrid contribution 0.378 -0.523 0.213 0.680 sum -2.812 9.767 21.513 23.793 Atomic orbital electron populations 1.22004 0.90877 1.03868 1.04019 1.19962 0.97949 0.99905 0.86423 0.87491 1.21559 1.00946 0.95437 0.83569 1.55235 1.58158 1.50640 1.22680 1.04201 0.73596 0.76889 0.72727 1.93544 1.78711 1.61038 1.64575 1.93537 1.33360 1.87279 1.84040 1.30495 1.13334 1.22900 1.07215 1.21321 1.00165 0.99962 0.93260 1.18958 0.95680 0.90791 0.95254 1.21749 1.30736 0.99872 1.06691 0.92281 1.25900 0.95534 0.96686 1.01320 1.70059 1.38534 1.07871 1.40396 0.85513 0.78366 0.78286 0.79321 1.19783 1.20545 1.18991 1.27097 1.00283 0.96326 1.00392 1.66281 1.13682 1.38454 1.03281 1.22185 1.02673 0.90237 0.98154 1.27534 1.05703 1.02888 1.03281 1.84086 1.47084 1.11656 1.17291 0.91340 0.89384 0.91023 0.90652 0.89103 0.73361 0.83542 0.83023 0.91534 0.91656 0.97740 0.97691 0.92646 0.78880 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.96 71.98 0.64 -0.92 16 2 C -0.02 -0.28 2.92 -11.54 -0.03 -0.32 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.11 1.88 5.39 86.38 0.47 2.35 16 5 N -1.10 -19.76 5.76 -187.50 -1.08 -20.84 16 6 S 2.63 70.86 5.46 -56.49 -0.31 70.56 16 7 O -0.99 -32.41 18.08 -127.65 -2.31 -34.72 16 8 O -0.99 -33.69 17.50 -127.65 -2.23 -35.92 16 9 C -0.61 -16.99 6.07 71.98 0.44 -16.55 16 10 C -0.11 -4.25 5.16 30.59 0.16 -4.10 16 11 C 0.03 1.59 4.97 29.85 0.15 1.73 16 12 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.04 0.65 6.03 88.52 0.53 1.19 16 21 N -0.50 -10.35 10.54 -191.45 -2.02 -12.36 16 22 C 0.02 0.28 11.35 83.66 0.95 1.23 16 23 C -0.26 -3.28 11.37 66.78 0.76 -2.52 16 24 S 0.15 2.09 22.67 -56.49 -1.28 0.81 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.68 6.90 -2.39 -0.02 0.67 16 27 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 28 H 0.08 1.49 7.69 -2.39 -0.02 1.47 16 29 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 30 H 0.43 5.64 7.37 -96.74 -0.71 4.93 16 31 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.33 356.24 -1.82 -79.15 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.34 Total: 10.25 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 4.76 Total: -48.10 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.81 Total: -87.92 kcal Atomic # 8 Polarization: -66.10 SS G_CDS: -4.54 Total: -70.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 72.95 SS G_CDS: -1.59 Total: 71.37 kcal Total: -77.33 -1.82 -79.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186674846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.960 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds