Wall clock time and date at job start Tue Mar 31 2020 12:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48498 * 109.47536 * 89.99497 * 3 2 1 5 5 H 1.48502 * 109.47395 * 209.99733 * 3 2 1 6 6 H 1.48508 * 109.47002 * 329.99402 * 3 2 1 7 7 C 1.37884 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99765 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99773 * 180.02562 * 7 2 1 10 10 O 1.42893 * 112.94756 * 50.33333 * 9 7 2 11 11 C 1.53952 * 113.74087 * 278.74159 * 9 7 2 12 12 N 1.47818 * 86.03454 * 222.08756 * 11 9 7 13 13 C 1.34776 * 134.45201 * 204.64144 * 12 11 9 14 14 O 1.21700 * 119.99730 * 179.86468 * 13 12 11 15 15 C 1.46430 * 120.00245 * 359.87404 * 13 12 11 16 16 C 1.34813 * 120.00016 * 179.97438 * 15 13 12 17 17 C 1.47208 * 119.99737 * 179.97438 * 16 15 13 18 18 C 1.39855 * 120.16878 * 342.86504 * 17 16 15 19 19 C 1.37870 * 119.82114 * 180.02562 * 18 17 16 20 20 C 1.38422 * 120.17275 * 0.02562 * 19 18 17 21 21 C 1.38378 * 120.34760 * 359.97438 * 20 19 18 22 22 C 1.37914 * 120.16890 * 359.71826 * 21 20 19 23 23 N 1.48022 * 120.08962 * 180.27808 * 22 21 20 24 24 O 1.21798 * 119.99897 * 7.42607 * 23 22 21 25 25 O 1.21802 * 120.00014 * 187.42607 * 23 22 21 26 26 C 1.47575 * 91.05198 * 24.55051 * 12 11 9 27 27 H 0.96996 * 119.99646 * 0.02562 * 1 2 3 28 28 H 0.96695 * 114.00342 * 309.67081 * 10 9 7 29 29 H 1.08999 * 113.76569 * 336.35139 * 11 9 7 30 30 H 1.08996 * 113.76976 * 107.74760 * 11 9 7 31 31 H 1.07997 * 120.00020 * 359.97438 * 15 13 12 32 32 H 1.07997 * 119.99963 * 359.97438 * 16 15 13 33 33 H 1.07998 * 120.09123 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.91568 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.82958 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.91776 * 180.02562 * 21 20 19 37 37 H 1.09006 * 113.76671 * 221.15403 * 26 12 11 38 38 H 1.08998 * 113.87269 * 89.76655 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0683 -0.3539 1.0140 11 6 4.1319 -0.9802 -1.3916 12 7 5.0923 -2.0382 -1.0132 13 6 6.3443 -2.3576 -1.3968 14 8 6.9093 -3.3121 -0.8960 15 6 7.0247 -1.5561 -2.4160 16 6 8.2772 -1.8752 -2.7993 17 6 8.9610 -1.0697 -3.8242 18 6 8.2260 -0.2160 -4.6531 19 6 8.8737 0.5347 -5.6110 20 6 10.2476 0.4447 -5.7540 21 6 10.9817 -0.3977 -4.9377 22 6 10.3491 -1.1503 -3.9706 23 7 11.1369 -2.0462 -3.0943 24 8 12.3540 -2.0203 -3.1332 25 8 10.5680 -2.8094 -2.3343 26 6 4.1314 -2.6025 -0.0458 27 1 -0.4849 0.8400 -0.0004 28 1 3.7023 0.5410 1.0278 29 1 3.4726 -1.2589 -2.2136 30 1 4.5871 0.0012 -1.5237 31 1 6.5232 -0.7092 -2.8606 32 1 8.7788 -2.7219 -2.3543 33 1 7.1539 -0.1457 -4.5436 34 1 8.3076 1.1941 -6.2522 35 1 10.7492 1.0350 -6.5065 36 1 12.0534 -0.4621 -5.0549 37 1 4.5862 -2.9138 0.8946 38 1 3.4712 -3.3591 -0.4699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186844372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:04 Heat of formation + Delta-G solvation = 21.375797 kcal Electronic energy + Delta-G solvation = -25663.565418 eV Core-core repulsion = 21670.480522 eV Total energy + Delta-G solvation = -3993.084896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.40501 -40.00846 -39.66483 -37.81877 -36.82156 -34.56946 -34.34941 -32.61684 -32.44322 -30.56533 -28.94209 -26.86014 -25.96125 -25.43412 -24.27408 -22.84504 -21.57045 -19.96829 -19.27888 -18.73242 -18.50315 -17.69859 -17.62221 -17.23842 -16.48832 -16.32387 -15.91519 -15.26656 -14.98247 -14.88074 -14.33628 -13.86951 -13.71646 -13.53936 -13.19485 -13.05529 -12.85312 -12.51230 -12.39097 -12.21559 -12.03061 -11.58595 -11.33338 -11.29515 -11.03286 -10.91554 -10.68933 -10.57098 -10.20627 -10.07114 -9.88940 -9.40597 -9.08893 -8.95391 -8.77413 -8.09495 -6.48716 -4.55281 -0.60985 0.17905 1.05105 1.16646 1.57783 2.90171 2.92053 2.93856 3.07257 3.23144 3.56739 3.89774 3.93987 3.96003 4.18651 4.39198 4.46087 4.57241 4.67372 4.87496 4.96216 5.06438 5.19299 5.29974 5.39702 5.49906 5.58627 5.76887 5.87345 5.96909 5.98557 6.10335 6.17309 6.29176 6.38368 6.53185 6.54586 7.13144 7.48249 7.96564 8.17148 8.43745 8.51241 8.55891 9.08377 10.63475 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.003166 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.639915 B = 8841.395195 C = 9790.478632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.080 3.920 3 Si 0.858 3.142 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.195 3.805 10 O -0.553 6.553 11 C 0.060 3.940 12 N -0.626 5.626 13 C 0.555 3.445 14 O -0.547 6.547 15 C -0.145 4.145 16 C -0.095 4.095 17 C 0.015 3.985 18 C -0.113 4.113 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.053 4.053 22 C -0.039 4.039 23 N 0.030 4.970 24 O -0.161 6.161 25 O -0.149 6.149 26 C 0.128 3.872 27 H 0.271 0.729 28 H 0.352 0.648 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.181 0.819 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.078 0.922 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.142 4.779 -14.275 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.125 4.125 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.110 0.890 9 C 0.154 3.846 10 O -0.363 6.363 11 C -0.063 4.063 12 N -0.360 5.360 13 C 0.345 3.655 14 O -0.428 6.428 15 C -0.165 4.165 16 C -0.114 4.114 17 C 0.013 3.987 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.140 4.140 21 C -0.072 4.072 22 C -0.122 4.122 23 N 0.548 4.452 24 O -0.376 6.376 25 O -0.363 6.363 26 C 0.006 3.994 27 H 0.082 0.918 28 H 0.204 0.796 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.198 0.802 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.097 0.903 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.389 4.232 -14.345 22.187 hybrid contribution 0.126 1.445 -0.072 1.452 sum 16.515 5.677 -14.417 22.646 Atomic orbital electron populations 1.69857 1.06074 1.27659 1.47477 1.25011 0.94906 0.98987 0.93616 0.87356 0.80354 0.84387 0.79300 1.19252 1.18203 1.20932 1.21232 0.87591 0.95757 1.52872 0.88992 1.20551 0.92643 0.88011 0.83380 1.86480 1.67506 1.25586 1.56745 1.24752 0.88644 0.90151 1.02729 1.50088 1.12022 1.32438 1.41417 1.17774 0.80933 0.84304 0.82471 1.90813 1.65573 1.29562 1.56828 1.23235 0.95216 1.00172 0.97918 1.23317 0.94570 0.99831 0.93728 1.19008 0.89926 0.94535 0.95199 1.21613 1.01364 0.95234 0.94961 1.21592 0.94720 0.96139 0.95776 1.21312 0.94070 0.98804 0.99780 1.21019 1.02115 0.92518 0.91558 1.21239 0.91175 1.00910 0.98910 1.43605 1.01223 1.00212 1.00148 1.94518 0.95669 1.74029 1.73381 1.94470 1.71843 1.35132 1.34886 1.23316 0.87234 0.97039 0.91761 0.91844 0.79614 0.88459 0.91250 0.85681 0.80236 0.83104 0.83616 0.83453 0.82768 0.90340 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 13.96 55.43 0.77 -23.05 16 2 C 0.08 2.03 5.47 -17.81 -0.10 1.94 16 3 Si 0.86 18.02 24.31 -169.99 -4.13 13.89 16 4 H -0.27 -5.53 7.05 56.52 0.40 -5.13 16 5 H -0.26 -4.93 5.16 56.52 0.29 -4.64 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.38 9.19 -34.44 -0.32 -13.69 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.20 4.28 1.06 -90.84 -0.10 4.18 16 10 O -0.55 -12.65 13.35 -35.23 -0.47 -13.12 16 11 C 0.06 1.13 6.94 -2.83 -0.02 1.11 16 12 N -0.63 -12.19 3.61 -179.73 -0.65 -12.84 16 13 C 0.55 10.65 7.97 -12.96 -0.10 10.54 16 14 O -0.55 -12.20 16.96 5.19 0.09 -12.11 16 15 C -0.14 -2.14 9.14 -37.50 -0.34 -2.48 16 16 C -0.10 -1.34 8.65 -37.15 -0.32 -1.67 16 17 C 0.01 0.17 5.83 -105.06 -0.61 -0.45 16 18 C -0.11 -0.92 9.34 -39.11 -0.37 -1.28 16 19 C -0.06 -0.36 10.03 -39.65 -0.40 -0.75 16 20 C -0.12 -0.65 10.04 -39.46 -0.40 -1.04 16 21 C -0.05 -0.41 9.55 -39.65 -0.38 -0.79 16 22 C -0.04 -0.44 6.87 -79.47 -0.55 -0.99 16 23 N 0.03 0.42 4.45 34.19 0.15 0.58 16 24 O -0.16 -2.21 18.47 -29.46 -0.54 -2.75 16 25 O -0.15 -2.38 15.31 -29.46 -0.45 -2.83 16 26 C 0.13 2.60 8.23 -2.97 -0.02 2.58 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.35 7.62 3.57 45.56 0.16 7.79 16 29 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 30 H 0.07 1.21 6.83 -51.93 -0.35 0.86 16 31 H 0.13 1.48 6.23 -52.49 -0.33 1.16 16 32 H 0.18 2.94 4.49 -52.58 -0.24 2.70 16 33 H 0.15 1.01 6.51 -52.49 -0.34 0.67 16 34 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 35 H 0.15 0.33 8.06 -52.48 -0.42 -0.09 16 36 H 0.15 0.95 7.63 -52.49 -0.40 0.55 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -31.79 330.13 -7.55 -39.34 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.28 Total: 10.71 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -4.02 Total: -2.80 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.28 Total: -35.31 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.38 Total: -30.81 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -4.13 Total: 13.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.79 -7.55 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.717 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds